These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6059#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1150 fasta sequence [GTCTGAGTGGTTTCGTTGGTTTGTATAGACCAAGAGGTAATGATTAACAGAAGTAGTCGGGGGCATTGGTATTACGGCGCGAGAGGTGAAATTCGTAGACCGTCGTAGGACCCACAGAAGCGAAAGCGTTTGCCAAGGATGCTTTCATTAATCAAGAACGAAAGTTAGAGGATCGAAGGCGATTAGACACCGCCCTAGTTCTAACCGTAAACGATGCCAATTAGCAATTGGGAGACGCTACCTCTCTTTAACGAAGCGCAGTCAAGATGAAAGCTAAAGGAGTGCTGAAAGAATACCAGGTGATCGGGCGCAACTGCCCTCGGAGAAGGAGAAGAACCCTCCGCTCTTCAAGATGCACATCTTCGCCCCGGACCACATCGTGCCAAGTCGCGCTTCTGGTACTTCCTGCGTCACTGCGTAAGTTCAAGAAGGCAACCGGCGAGATCGTCTCGGTGAAGCGCATCCTGGAGAAGACGCCGCTGAAGGTGAAGAACTTCGGCATCTGGTTGCGTTACGATTCGCGCTCCGGTACGCACAACATGTACCGCGAGTACCGTGACCTGACCGTTGGCGGTGCCGTCACGCAGTCTACAGTGACATGGCCTCCCGTCACCGTGCCCGTGCCCACTCGATCCAGATCATCAAGGTGGAATCGATCGCCGCGTCCAAGACGCGCCGTGCGCACATCAAGCAGTTCCACAACTCGAAGATCCGATTCCCGCTGGTGCAGCGATACCACCACAAGCGCTACCGGAAGCTGTTCTCTTACCGCCGCCCGGAGACCTTCTACCAGTAAGGCGGGAGAAGCAGCGGCGCACGGCACTGTTGGGAAGACTGTCATCATACGCATCGCCGCCGCAGCGCCACGGATTCGTCCGCATCAGCCGCGTTGTGTTCGCGTTTGGAGTTAGTTCTGCTGCTGCGTGTGCACGATCGGTTGTTGTTGTGGTGGTGCGTGTTTACGGTGCGGTGTGATGATGATGCTGTGTGTATTCCTCTGGTTGAAGTGTTAATTTGCACGGGAAATACAGTTGCGGCCCCCCTTCTCTTTCCATCCACCCCAGGGGGGGAAGTCTTTGAGCAAAGTAAAACCTCAGGACGGTGTGATACCAATGAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATG] [+] EMBL CNS09IIK [GTCTGAGTGGTTTCGTTGGTTTGTATAGACCAAGAGGTAATGATTAACAGAAGTAGTCGGGGGCATTGGTATTACGGCGCGAGAGGTGAAATTCGTAGACCGTCGTAGGACCCACAGAAGCGAAAGCGTTTGCCAAGGATGCTTTCATTAATCAAGAACGAAAGTTAGAGGATCGAAGGCGATTAGACACCGCCCTAGTTCTAACCGTAAACGATGCCAATTAGCAATTGGGAGACGCTACCTCTCTTTAACGAAGCGCAGTCAAGATGAAAGCTAAAGGAGTGCTGAAAGAATACCAGGTGATCGGGCGCAACTGCCCTCGGAGAAGGAGAAGAACCCTCCGCTCTTCAAGATGCACATCTTCGCCCCGGACCACATCGTGCCAAGTCGCGCTTCTGGTACTTCCTGCGTCACTGCGTAAGTTCAAGAAGGCAACCGGCGAGATCGTCTCGGTGAAGCGCATCCTGGAGAAGACGCCGCTGAAGGTGAAGAACTTCGGCATCTGGTTGCGTTACGATTCGCGCTCCGGTACGCACAACATGTACCGCGAGTACCGTGACCTGACCGTTGGCGGTGCCGTCACGCAGTCTACAGTGACATGGCCTCCCGTCACCGTGCCCGTGCCCACTCGATCCAGATCATCAAGGTGGAATCGATCGCCGCGTCCAAGACGCGCCGTGCGCACATCAAGCAGTTCCACAACTCGAAGATCCGATTCCCGCTGGTGCAGCGATACCACCACAAGCGCTACCGGAAGCTGTTCTCTTACCGCCGCCCGGAGACCTTCTACCAGTAAGGCGGGAGAAGCAGCGGCGCACGGCACTGTTGGGAAGACTGTCATCATACGCATCGCCGCCGCAGCGCCACGGATTCGTCCGCATCAGCCGCGTTGTGTTCGCGTTTGGAGTTAGTTCTGCTGCTGCGTGTGCACGATCGGTTGTTGTTGTGGTGGTGCGTGTTTACGGTGCGGTGTGATGATGATGCTGTGTGTATTCCTCTGGTTGAAGTGTTAATTTGCACGGGA ] [+] EMBL CNS08TY6 [ TTAACGAAGCGCAGTCAAGATGAAAGCTAAAGGAGTGCTGAAAGAATACCAGGTGATCGGGCGCAACTGCCCTCGGAGAAGGAGAAGAACCCTCCGCTCTTCAAGATGCACATCTTCGCCCCGGACCACATCGTGCCAAGTCGCGCTTCTGGTACTTCCTGCGTCACTGCGTAAGTTCAAGAAGGCAACCGGCGAGATCGTCTCGGTGAAGCGCATCCTGGAGAAGACGCCGCTGAAGGTGAAGAACTTCGGCATCTGGTTGCGTTACGATTCGCGCTCCGGTACGCACAACATGTACCGCGAGTACCGTGACCTGACCGTTGGCGGTGCCGTCACGCAGTCTACAGTGACATGGCCTCCCGTCACCGTGCCCGTGCCCACTCGATCCAGATCATCAAGGTGGAATCGATCGCCGCGTCCAAGACGCGCCGTGCGCACATCAGGCAGTTCCACAACTCGAAGCTCCGATTCCCGCTGGTGCAGCGATACCACCACAAGCGCTACCGGAAGCTGTTCTCTTACCGCCGCCCGGAGACCTTCTACCAGTAAGGCGGGAGAAGCAGCGGCGCACGGCACTGTTGGGAAGACTGTCATCATACGCATCGCCGCCGCAGCGCCACGGATTCGTCCGCATCAGCCGCGTTGTGTTCGCGTTTGGAGTGAGTTCTGCTGCTGCGTGTGCACGATCGGTTGTTGTTGTGGTGGTGCGTGTTTACGGTGCGGTGTGATGATGATGCTGTGTGTATTCCTCTGGTTGAAGTGTTAATTTGCACCGGAAATACAGTTGCGGCCCCCCTTCTCTTTCCATCCACCCCAGGGGGGGAAGTCTTTGAGCAAAGTAAAACCTCAGGACGGTGTGATACCAATGAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATG] consensusID : consensus_6059#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 690 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGCCGCTGAGGCTGCGTATCCCTTTTTTAAGGAATTAATCGGTTTATTTAACTGTGTTTTGCGTTGAATTTCGTTTAGCAAATTCTGTGCTCTGAAAGGGAAAGCGTCTGCCGTGTGGTTGCCAATGAAGTGAAGGAAATATATTGCCAAATTTATCTACGAAATCAAAACAATTCTGGTGCTCCAAGACTTTTCCCTGGAGCAGAATAACAACTCGCTCTGGTCGCTTCGTAGCATTTCCACACTGTGCTAGCATTTGGTTGCGCCCCTGCACACAAACAATTCGTTGTTCCGGCCGGGAGTGTAAAGACGCTTTTCGAAAGGGAAAGTAAAAACCTAATTTGTGAGGTCAAGCACACAAGGAGCAGCTCACAATGAGTAGGAAACCAAAATCGTCGGGTTATTCCAAAACAAATGACGACAGTAGCGATGAGCTACCGTACAAGGATCATAAAAACCGCAACCGCTCAAAGCACAAACACCGGTCGGATTCCGCGGAACGCACCTACGACGATTACGCTGAGTCCGGTCGTGAGAAATCATCCCGTGATCGGTCCAGATGGGAGGAGAAGAAAAGTTATCACAGGGATAACAACAGAGACCGGGAACAGACGACTTCGAAATATCAAGATGATAGAAGAGAGGACCAGAA] [+] EMBL BM586613 [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGCCGCTGAGGCTGCGTATCCCTTTTTTAAGGAATTAATCGGTTTATTTAACTGTGTTTTGCGTTGAATTTCGTTTAGCAAATTCTGTGCTCTGAAAGGGAAAGCGTCTGCCGTGTGGTTGCCAATGAAGTGAAGGAAATATATTGCCAAATTTATCTACGAAATCAAAACAATTCTGGTGCTCCAAGACTTTTCCCTGGAGCAGAATAACAACTCGCTCTGGTCGCTTCGTAGCATTTCCACACTGTGCTAGCATTTGGTTGCGCCCCTGCACACAAACAATTCGTTGTTCCGGCCGGGAGTGTAAAGACGCTTTTCGAAAGGGAAAGTAAAAACCTAATTTGTGAGGTCAAGCACACAAGGAGCAGCTCACAATGAGTAGGAAACCAAAATCGTCGGGTTATTCCAAAACAAATGACGACAGTAGCGATGAGCTACCGTACAAGGATCATAAAAACCGCAACCGCTCAAAGCACAAACACCGGTCGGATTCCGCGGAACGCACCTACGACGATTACGCTGAGTCCGGTCGTGAGAAATCATCCCGTGATCGGTCCAGATGGGAGGAGAAGAAAAGTTATCACAGGGATAACAACAGAGACCGGGAACAGACGACTTCGAAATATCAAGATGATAGAAGAGAGGACCAGAA] [+] EMBL BM615873 [ TGCGTATCCCTTTTTTAAGGAATTAATCGGTTTATTTAACTGTGTTTTGCGTTGAATTTCGTTTAGCAAATTCTGTGCTCTGAAAGGGAAAGCGTCTGCCGTGTGGTTGCCAATGAAGTGAAGGAAATATATTGCCAAATTTATCTACGAAATCAAAACAATTCTGGTGCTCCAAGACTTTTCCCTGGAGCAGAATAACAACTCGCTCTGGTCGCTTCGTAGCATTTCCACACTGTGCTAGCATTTGGTTGCGCCCCTGCACACAAACAATTCGTTGTTCCGGCCGGGAGTGTAAAGACGCTTTTCGAAAGGGAAAGTAAAAACCTAATTTGTGAGGTCAAGCACACAAGGAGCAGCTCACAATGAGTAGGAAACCAAAATCGTCGGGTTATTCCAAAACAAATGACGACAGGAGCGATGAGCTACCGTACAAGGATCATAAAAACCGCAACCGCTCAAAGCACAAACACCGGTCGGATTCCGCGGAACGCACCTACGACGATTACGCTGA ] consensusID : consensus_6059#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 179 fasta sequence [GAAGCTGACGACGACCGGCTCCTACGGGCAGGACAAGCGCTGCAATGCGCTCCAGCTGCGCACCGGCCTGACCGCGGCGAAGGCTCTCGAGCAGGAAGCTACGGCACGCTCGGCCGCCGCCGCTGCCGCTGCTGCCACCCCCGCCACTGCTGGGGAGCAGGAAGCCGAACCGGCGCAAG] [+] EMBL BX606813 [GAAGCTGACGACGACCGGCTCCTACGGGCAGGACAAGCGCTGCAATGCGCTCCAGCTGCGCACCGGCCTGACCGCGGCGAAGGCTCTCGAGCAGGAAGCTACGGCACGCTCGGCCGCCGCCGCTGCCGCTGCTGCCACCCCCGCCACTGCTGGGGAGCAGGAAGCCGAACCGGCGCAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6059#0 GTCTGAGTGGTTTCGTTGGTTTGTATAGACCAAGAGGTAATGATTAACAGAAGTAGTCGG 60 consensus_6059#2 ------------------------------------------------------------ consensus_6059#1 ------------------------------------------------------------ consensus_6059#0 GGGCATTGGTATTACGGCGCGAGAGGTGAAATTCGTAGACCGTCGTAGGACCCACAGAAG 120 consensus_6059#2 ------------------------------------------------------------ consensus_6059#1 ------------------------------------------------------------ consensus_6059#0 CGAAAGCGTTTGCCAAGGATGCTTTCATTAATCAAGAACGAAAGTTAGAGGATCGAAGGC 180 consensus_6059#2 ------------------------------------------------------------ consensus_6059#1 ------------------------------------------------------------ consensus_6059#0 GATTAGACACCGCCCTAGTTCTAACCGTAAACGATGCCAATTAGCAATTGGGAGACGCTA 240 consensus_6059#2 ------------------------------------------------------------ consensus_6059#1 ------------------------------------------------------------ consensus_6059#0 CCTCTCTTTAACGAAGCGCAGTCAAGATGAAAGCTAAAGGAGTGCTGAAAGAATACCAGG 300 consensus_6059#2 ------------------------------------------------------------ consensus_6059#1 ------------------------------------------------------------ consensus_6059#0 TGATCGGGCGCAACTGCCCTCGGAGAAGGAGAAGAACCCTCCGCTCTTCAAGATGCACAT 360 consensus_6059#2 ------------------------------------------------------------ consensus_6059#1 -------CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGCCGCTGAGGCTGC 53 consensus_6059#0 CTTCGCCCCGGACCACATCGTGCCAAGTCGCGCTTCTGGTACTTCCTGCGTCACTGCGTA 420 consensus_6059#2 ------------------------------------------------------------ consensus_6059#1 GTATCCCTTTTTTAAGGAATTAATCGGTTTATTTAACTGTGTTTTGCGTTGAATTTCGTT 113 consensus_6059#0 AGTTCAAGAAGGCAACCGGCGAGATCGTCTCGGTGAAGCGCATCCTGGAGAAGACGCCGC 480 consensus_6059#2 ------------------------------------------------------------ consensus_6059#1 TAGCAAATTCTGTGCTCTGAAAGGGAAAGCGTCTGCCGTGTGGTTGCCAATGAAGTGAAG 173 consensus_6059#0 TGAAGGTGAAGAACT-TCGGCATCTGGTTGCGTTACGATTC--GCGCTCCGGTACGCACA 537 consensus_6059#2 -GAAGCTGACGACGA-CCGGCTCCTACGGGCAGGACAA-----GCGCTGCAATGCGCTCC 53 consensus_6059#1 GAAATATATTGCCAAATTTATCTACGAAATCAAAACAATTCTGGTGCTCCAAGACTTTTC 233 ** * * * ** * * *** * * consensus_6059#0 ACATGTACCGCG-AGTACCGTGACCTGACCGTTGGCGGTGCCGTCACGCAGTCTACAGTG 596 consensus_6059#2 AGCTGCGC--------ACC--GGCCTGACCGCGGCGAAGGCTCTCGAGCAGGAAGCTACG 103 consensus_6059#1 CCTGGAGCAGAATAACAACTCGCTCTGGTCGCTTCGTAGCATTTCCA-CACTGTGCTAGC 292 * * * * * *** ** ** ** * consensus_6059#0 ACATGGCCTCCCGTCACCGTGCCCGTGCCCACTCGATCCAGATCATCAAGGTGGAATCGA 656 consensus_6059#2 GCACGCTCGGCCGCCGCCGCTGCCGCTGCTGCC--ACCCCCGCCACTGCTGGGGAGCAGG 161 consensus_6059#1 ATTTGGTTGCGCCCCTGCACACAAACAATTCGTT-GTTCCGGCCGGGAGTGTAAAGACGC 351 * * * * * * * * * consensus_6059#0 TCGCCGCGTCCAAGACGCGCCGTGCGCACATCAAGCAGTTCCACAACTCGAAGATCCGAT 716 consensus_6059#2 AAGCCGAA-CCGGCGCAAG----------------------------------------- 179 consensus_6059#1 TTTTCGAA---AGGGAAAGTAAAAACCTAATTTGTGAGGTCAAGCACACAAGGAGCAGCT 408 ** * consensus_6059#0 TCCCGCTGGTGCAGCGATACCACCACAAGCGCTACCGGAAGCTGTTCTCTTACCGCCGCC 776 consensus_6059#2 ------------------------------------------------------------ consensus_6059#1 CACAATGAGTAGGAAACCAAAATCGTCGG-GTTATTCCAAAACAAATGACGACAGTAGCG 467 consensus_6059#0 CGGAGACCTTCTACCAGTAAGGCGGGAGAAGCAGCGGCGCACGGCACTGTTGGGAAGACT 836 consensus_6059#2 ------------------------------------------------------------ consensus_6059#1 ATGAGCTACCGTACAAGGATCATAAAAACCGCAACCGCTCAAAGCACAAACACCGGTCGG 527 consensus_6059#0 GTCATCATACGCATCGCCGCCGCAGCGCCACGGATTCGTCCGCATCAGCCGCGTTGTGTT 896 consensus_6059#2 ------------------------------------------------------------ consensus_6059#1 ATTCCGCGGAACGCACCTACGACGATTACGCTGAGTCCGGTCGTGAGAAATCATCCCGTG 587 consensus_6059#0 CGCGTTTGGAGTTAGTTCTGCTGCTGCGTGTGCACGATCGGTTGTTGTTGTGGTGGTGCG 956 consensus_6059#2 ------------------------------------------------------------ consensus_6059#1 ATCGGTCCAGATGGGAGGAGAAGAAAAGTTATCACAGGGATAACAACAGAGACCGGGAAC 647 consensus_6059#0 TGTTTACGGTGCGGTGTGATGATGATGCTGTGTGTATTCCTCTGGTTGAAGTGTTAATTT 1016 consensus_6059#2 ------------------------------------------------------------ consensus_6059#1 AGACGACTTCGAAATATCAAGATGATAGAAGAGAGGACCAGAA----------------- 690 consensus_6059#0 GCACGGGAAATACAGTTGCGGCCCCCCTTCTCTTTCCATCCACCCCAGGGGGGGAAGTCT 1076 consensus_6059#2 ------------------------------------------------------------ consensus_6059#1 ------------------------------------------------------------ consensus_6059#0 TTGAGCAAAGTAAAACCTCAGGACGGTGTGATACCAATGAAAAAAAAAAAAAAAAAAAAA 1136 consensus_6059#2 ------------------------------------------------------------ consensus_6059#1 ------------------------------------------------------------ consensus_6059#0 AAAAAGGCCACATG 1150 consensus_6059#2 -------------- consensus_6059#1 -------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||