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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6065#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1193 fasta sequence
[CAGATNGCCCCCAGGGTATGGAGAAGCAATTCGTTCCCGGAGTCAGAGGTGAAAATTGTGTCTGCGTCAAACTTTTCCAAAACCTCTGTCGATCGCTTTCCGAAGCAGCTCGTTAACTCTTCAACGCTTTAACTCTCCTCGTAACACCCCAAATAAACCAGAATGCGGCAGCAGACCCCTGCAGAGAATGGGGGCAGCCGTCCCAAAAGAACCGAGCTGCAAGGGAAGCTTCCAAAATTGAAAACCAGCAAGCAAGGGGTTGGGTCCGATTGAAGGTTCCCCTTGAACAAGGTAACCCGGCCGGTTAATTGCTGGGCACCTTAATTGGTTGAAGGGGAGGAGGCACCTTGAGGTTGGGGAAATTTGCGGAAACCCAATTCCGGTTACAAATTGCCTGGGAATGGAAACCAAAGGGAAGGAAACCAAACCTTGGGAACCCGNAAATTCGCAAGGGGCAAGGGGCCATTGGAAACCCAAGAATTCAAAATTGGGCGCCGGGAACAATTGGCGGTTGCAAAGGGGCCTTCGGAAAAACANGGAACAATTCTTGAAGCCGGGCCATTGGTGACAANACAAAATTGGCCTTGGCGGGGTTAATTTCCTTTGGTTTGGTTCCTTTTAAACCCCCTGGTTTTGGCCCAGAGACCCAAAAGGAAAGATTTGGCCAANTTCCCCCTTTTTTCCAANAAATGGAAACGCTGGGAACCGGAAACACTGTGTGGTTAAACCCCCNTTAGGGGCACAAAGGAGCGGGGCCAGACACACCTGGCGAAGTTTGNAACCTGTGAGGCCANACATGCAGTGTGCGGGGTTAAAACAACCTCAAAATACGCCCAANGAGGACCCCCCCCAATGTGCCGGGAAACGCTGTGAAAATTGGGGTCGAACCCGGAAATTCCCGGCAAAAACGGGGGAACTTTTTGGGGGGGCCCCCCGGTCCAANGGGGGCCCTTTNGGGCCTTTAAACCCAATTTCCCAAAGGGAATTTCCCAAAAAGGAACCGCGGAAGATGAGATGAGGAGACTGGCCAGTGACACGATGATCGGTATCTGCGAACATGGGCTCGATATGGTCGATGGGACGACGACGTCGCGATCATCGCAGGTCATGAGCCGTAAGGGCATGAAGCCCTTCCANAAGNCGTTTTGGTTATANCCTCTCTCTTATTAAAAATGTCTCCGTCTCACTCTNNT]
[+] EMBL AL693545 [CAGATNGCCCCCAGGGTATGGAGAAGCAATTCGTTCCCGGAGTCAGAGGTGAAAATTGTGTCTGCGTCAAACTTTTCCAAAACCTCTGTCGATCGCTTTCCGAAGCAGCTCGTTAACTCTTCAACGCTTTAACTCTCCTCGTAACACCCCAAATAAACCAGAATGCGGCAGCAGACCCCTGCAGAGAATGGGGGCAGCCGTCCCAAAAGAACCGAGCTGCAAGGGAAGCTTCCAAAATTGAAAACCAGCAAGCAAGGGGTTGGGTCCGATTGAAGGTTCCCCTTGAACAAGGTAACCCGGCCGGTTAATTGCTGGGCACCTTAATTGGTTGAAGGGGAGGAGGCACCTTGAGGTTGGGGAAATTTGCGGAAACCCAATTCCGGTTACAAATTGCCTGGGAATGGAAACCAAAGGGAAGGAAACCAAACCTTGGGAACCCGNAAATTCGCAAGGGGCAAGGGGCCATTGGAAACCCAAGAATTCAAAATTGGGCGCCGGGAACAATTGGCGGTTGCAAAGGGGCCTTCGGAAAAACANGGAACAATTCTTGAAGCCGGGCCATTGGTGACAANACAAAATTGGCCTTGGCGGGGTTAATTTCCTTTGGTTTGGTTCCTTTTAAACCCCCTGGTTTTGGCCCAGAGACCCAAAAGGAAAGATTTGGCCAANTTCCCCCTTTTTTCCAANAAATGGAAACGCTGGGAACCGGAAACACTGTGTGGTTAAACCCCCNTTAGGGGCACAAAGGAGCGGGGCCAGACACACCTGGCGAAGTTTGNAACCTGTGAGGCCANACATGCAGTGTGCGGGGTTAAAACAACCTCAAAATACGCCCAANGAGGACCCCCCCCAATGTGCCGGGAAACGCTGTGAAAATTGGGGTCGAACCCGGAAATTCCCGGCAAAAACGGGGGAACTTTTTGGGGGGGCCCCCCGGTCCAANGGGGGCCCTTTNGGGCCTTTAAACCCAATTTCCCAAAGGGAATTTCCCAAAAAGGAACCGCGGAAGATGAGATGAGGAGACTGGCCAGTGACACGATGATCGGTATCTGCGAACATGGGCTCGATATGGTCGATGGGACGACGACGTCGCGATCATCGCAGGTCATGAGCCGTAAGGGCATGAAGCCCTTCCANAAGNCGTTTTGGTTATANCCTCTCTCTTATTAAAAATGTCTCCGTCTCACTCTNNT]
consensusID : consensus_6065#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 759 fasta sequence
[CCGCGGACGCGTGGGCGTTCCCGGAGTCAAGAGGTGAAAATTGTGTCTGCGTCAAACTTTTCCAAAACCTCTGTCGATCGCTTTCCGAAGCAGCTCGTTAACTCTTCAACGCTTTAACTCTCCTCGTAACCACCCCAAACTAAACCAGAATGCCGGCAGCAGCACCCCCCGCAGAGAATGGGGCAGCCGTCCCAAAGACCGAGCTGCAGGAGCTCCAAATGAAACAGCAGCAGGTGGTCGATGAGTCCCTGGACAGTACCCGCCGTATGCTGGCACTATGTGAGGAGAGCAAGGAAGCCGGGATTCGAACCCTGGTGGCCCTTGACGATCAGGGAGAACAACTGGACCGAATCGAGGAGGGCATGGACCAGATCAATGCCGACATGCGTGAGGCTGAAAAGAATCTGAGCGGCATGGAAAAATGCTGCGGTATCTGTGTCTTACCGTGCAACAAGAGTGCATCCTTCAAAGAGGACGACGGATACCTGGAAGGGCAACGATGACGGCAAGGTGGTGAACAACCAGCCCCAGCGAGTGATGGACGATCGCAACGGATTGGGCCCGCAGGCTGGCTACATCGGAAGGATCACGAACGACGCCCGGGAAGATGAGATGGAGGAGAACATGGGCCAGGTGAACACGATGATCGGTAATCTGCGAAACATGGCGCTCGATATGGGCTCCGAGCT-GGAGAACCAGAACAGACAGATCGACAGAATCAATCGCAAGGGAGATTCCAACGCCACCAGGATAGCGGCT]
[+] EMBL BM591032 [CCGCGGACGCGTGGGCGTTCCCGGAGTCAAGAGGTGAAAATTGTGTCTGCGTCAAACTTTTCCAAAACCTCTGTCGATCGCTTTCCGAAGCAGCTCGTTAACTCTTCAACGCTTTAACTCTCCTCGTAACCACCCCAAACTAAACCAGAATGCCGGCAGCAGCACCCCCCGCAGAGAATGGGGCAGCCGTCCCAAAGACCGAGCTGCAGGAGCTCCAAATGAAACAGCAGCAGGTGGTCGATGAGTCCCTGGACAGTACCCGCCGTATGCTGGCACTATGTGAGGAGAGCACTGAGGTGGGAATGCGAACCATCGTAATGCTGGATGAACAAGGAGAACAACTGGACCGAATCGAGGAGGGCATGGACCAGATCAATGCCGACATGCGTGAGGCTGAAAAGAATCTGAGCGGCATGGAAAAATGCTGCGGTATCTGTGTCTTACCGTGCAACAAGAGTGCATCCTTCAAAGAGGACGACGGATACCTGGAAGGGCAACGATGACGGCAAGGTGGTGAACAACCAGCCCCAGCGAGTGATGGACGATCGCAACGGATTGGGCCCGCAGGCTGGCTACATCGGAAGGATCACGAACGACGCCCGGGAAGATGAGATGGAGGAGAACATGGGCCAGGTGAACACGATGATCGGTAATCTGCGAAACATGGCGCTCGATATGGGCTCC ]
[+] EMBL BM653394 [ ccgCGGAGTCAAGAGGTGAAAATTGTGTCTGCGTCAAACTTTTCCAAAACCTCTGTCGATCGCTTTCCGAAGCAGCTCGTTAACTCTTCAACGCTTTAACTCTCCTCGTAACCACCCCAAACTAAACCAGAATGCCGGCAGCAGCACCCCCCGCAGAGAATGGGGCAGCCGTCCCAAAGACCGAGCTGCAGGAGCTCCAAATGAAACAGCAGCAGGTGGTCGATGAGTCCCTGGACAGTACCCGCCGTATGCTGGCACTATGTGAGGAGAGCAAGGAAGCCGGGATTCGAACCCTGGTGGCCCTTGACGATCAGGGAGAACAACTGGACCGAATCGAGGAGGGCATGGACCAGATCAATGCCGACATGCGTGAGGCTGAAAAGAATCTGAGCGGCATGGAAAAATGCTGCGGTATC ]
[+] EMBL BM627216 [ ccgGTCAAGAGGTGAAAATTGTGTCTGCGTCAAACTTTTCCAAAACCTCTGTCGATCGCTTTCCGAAGCAGCTCGTTAACTCTTCAACGCTTTAACTCTCCTCGTAACCACCCCAAACTAAACCAGAATGCCGGCAGCAGCACCCCCCGCAGAGAATGGGGCAGCCGTCCCAAAGACCGAGCTGCAGGAGCTCCAAATGAAACAGCAGCAGGTGGTCGATGAGTCCCTGGACAGTACCCGCCGTATGCTGGCACTATGTGAGGAGAGCAAGGAAGCCGGGATTCGAACCCTGGTGGCCCTTGACGATCAGGGAGAACAACTGGACCGAATCGAGGAGGGCATGGACCAGATCAATGCCGACATGCGTGAGGCTGAAAAGAATCTGAGCGGCATGGAAAAATGCTGCGGTATCTGTGTCTTACCGTGCAACAAGAGTGCATCCTTCAAAGAGGACGACGGTTACCTGGAAGGGCAACGATGACGGCAAGGTGGTGAACAACCAGCCCCAGCGAGTGATGGACGATCGCAACGGATTGGGCCCGCAGGCTGGCTACATCGGAAGGATCACGAACGACGCCCGGGAAGATGAGATGGAGGAGAACATGGGCCAGGTGAACACGATGATCGGTAATCTGCGAAACATGGCGCTCGATATGGGCTCCGAGCT GGAGA ]
[+] EMBL BM634849 [ ccgCGAAGCAGCTCGTTAACTCTTCAACGCTTTAACTCTCCTCGTAACCACCCCAAACTAAACCAGAATGCCGGCAGCAGCACCCCCCGCAGAGAATGGGGCAGCCGTCCCAAAGACCGAGCTGCAGGAGCTCCAAATGAAACAGCAGCAGGTGGTCGATGAGTCCCTGGACAGTACCCGCCGTATGCTGGCACTATGTGAGGAGAGCAAGGAAGCCGGGATTCGAACCCTGGTGGCCCTTGACGATCAGGGAGAACAACTGGACCGAATCGAGGAGGGCATGGACCAGATCAATGCCGACATGCGTGAGGCTGAAAAGAATCTGAGCGGCATGGAAAAATGCTGCGGTATCTGTGTCTTACCGTGCAACAAGAGTGCATCCTTCAAAGAGGACGACGG TACCTGGAAGGGCAACGATGACGGCAAGGTGGTAAACAACCAGCCCCAGCGAGTGATGGACGATCGCAACGGATTGGGCCCGCAGGCTGGCTACATCGGAAGGATCACGAACGACGCCCGGGAAGATGAGATGGAGGAGAACATGGGCCAGGTGAACACGATGATCGGTAATCTGCGAAACATGGCGCTCGATATGGGCTCCGAGCTGGGAGAACCAGAACAGACAGATCGACAGAATCAATCGCAAGGGAGATTCCAACGCCACCAGGATAGCGGCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6065#0 CAGATNGCCCCCAGGGTATGGAGAAGCAATTCGTTCCCGGAGTCA-GAGGTGAAAATTGT 59
consensus_6065#1 ---------------CCGCGGACGCGTGGG-CGTTCCCGGAGTCAAGAGGTGAAAATTGT 44
*** * ************** **************
consensus_6065#0 GTCTGCGTCAAACTTTTCCAAAACCTCTGTCGATCGCTTTCCGAAGCAGCTCGTTAACTC 119
consensus_6065#1 GTCTGCGTCAAACTTTTCCAAAACCTCTGTCGATCGCTTTCCGAAGCAGCTCGTTAACTC 104
************************************************************
consensus_6065#0 TTCAACGCTTTAACTCTCCTCGTAAC-ACCCCAAA-TAAACCAGAATGC-GGCAGCAGA- 175
consensus_6065#1 TTCAACGCTTTAACTCTCCTCGTAACCACCCCAAACTAAACCAGAATGCCGGCAGCAGCA 164
************************** ******** ************* ********
consensus_6065#0 -CCCCTGCAGAGAATGGGGGCAGCCGTCCCAAAAGAACCGAGCTGCAAGGGAAGCTTCCA 234
consensus_6065#1 CCCCCCGCAGAGAATGGGG-CAGCCGTCCCAAAG--ACCGAGCTGCAGG---AGCTCC-- 216
**** ************* ************* *********** * **** *
consensus_6065#0 AAATTGAAAACCAGCAAGCAAGGGGTTGGGTCCGATTGAAGGTTCCCCTTGAACAAGGTA 294
consensus_6065#1 AAATGAAACAGCAGCAGGTGGTCGATGAGTCCC--TGGACAGTACCCGCCGTAT--GCTG 272
**** ** * ***** * * * * ** * ** ** *** * * * *
consensus_6065#0 ACCCGGCCGGTTAATTGCTGGGCACCTTAATTGGTTGAAGGGGAGGAGGCACCTTGAGGT 354
consensus_6065#1 GCACTATGTGAGGAGAGCAAGGAAGCCGG---GATTCGAACCCTGGTGGCCCTTGACGAT 329
* * * * ** ** * * * ** * ** *** * * * *
consensus_6065#0 TGGGGAAATTTGCGGAAACCCAATTCCGGTTACAAATTGCCTGGG--AATGGAAACCAAA 412
consensus_6065#1 CAGGGAGAACAACTGGA--CCGAATCGAGGAGGGCATGGACCAGATCAATGCCGACATGC 387
**** * * * * ** * ** * ** * * * **** **
consensus_6065#0 GGGAAGG-AAACCAAACCTTGGGAACCCGNAAATTCGCAAGGGGCAAGGGGCCATTGGAA 471
consensus_6065#1 GTGAGGCTGAAAAGAATCTGAGCGGCATGGAAAAATGCTGCGGTATCTGTGTCTTACCGT 447
* ** * ** ** ** * * * *** ** ** * * * *
consensus_6065#0 ACC-CAAGAATTCAAAATTGGGCGCCGGGAACAATTGGCGGTTGCAAAGGGGCCTTCGGA 530
consensus_6065#1 GCAACAAGAGTGCATCCTTCAAAGAGGACGACGGATACCTGGAAGGGCAACGATGACGGC 507
* ***** * ** ** * * ** * * * * ***
consensus_6065#0 AAAACANGGAACAATTCTTGAAGCCGGGCCATTGGTGACAANACAAAATTGGCCTTGGCG 590
consensus_6065#1 AAGGTGGTGAACAACCAGCCCCAGCGAGTGATGGACGATCGCAACGGATTGGGCCCGC-- 565
** ****** ** * ** * ** * ***** * *
consensus_6065#0 GGGTTAATTTCCTTTGGTTTGGTTCCTTTTAAACCCCCTGGTTTTGGCCCAGAGACCCAA 650
consensus_6065#1 AGGCTGGCTACATCGGA--AGGATCACGAACGACGCCCGGGA--------AGATGAGATG 615
** * * * * * ** ** ** *** ** ***
consensus_6065#0 AAGGAAAGATTTGGCCAANTTCCCCCTTTTTTCCAANAAATGGAAACGCTGGGAACCGGA 710
consensus_6065#1 GAGGAGAACATGGGCCAGGTGAACACGATGATCGGTAATCTGCGAAACATGGCGCTCGAT 675
**** * * ***** * * * * ** * ** ** *** **
consensus_6065#0 AACACTGTGTGGTTAAACCCCCNTTAGGGGCACAAAGGAGCGGGGCCAGACACACCTGGC 770
consensus_6065#1 ATGGGCTCCGAGCTGGAGAACCAGAACAG--ACAGATCGACAGAATCAATCGCA---AGG 730
* * * * ** * * *** * * * ** * ** *
consensus_6065#0 GAAGTTTGNAACCTGTGAGGCCANACATGCAGTGTGCGGGGTTAAAACAACCTCAAAATA 830
consensus_6065#1 GAGATTCCAACGCCACCAGGATAGCGGCT------------------------------- 759
** ** * * *** *
consensus_6065#0 CGCCCAANGAGGACCCCCCCCAATGTGCCGGGAAACGCTGTGAAAATTGGGGTCGAACCC 890
consensus_6065#1 ------------------------------------------------------------
consensus_6065#0 GGAAATTCCCGGCAAAAACGGGGGAACTTTTTGGGGGGGCCCCCCGGTCCAANGGGGGCC 950
consensus_6065#1 ------------------------------------------------------------
consensus_6065#0 CTTTNGGGCCTTTAAACCCAATTTCCCAAAGGGAATTTCCCAAAAAGGAACCGCGGAAGA 1010
consensus_6065#1 ------------------------------------------------------------
consensus_6065#0 TGAGATGAGGAGACTGGCCAGTGACACGATGATCGGTATCTGCGAACATGGGCTCGATAT 1070
consensus_6065#1 ------------------------------------------------------------
consensus_6065#0 GGTCGATGGGACGACGACGTCGCGATCATCGCAGGTCATGAGCCGTAAGGGCATGAAGCC 1130
consensus_6065#1 ------------------------------------------------------------
consensus_6065#0 CTTCCANAAGNCGTTTTGGTTATANCCTCTCTCTTATTAAAAATGTCTCCGTCTCACTCT 1190
consensus_6065#1 ------------------------------------------------------------
consensus_6065#0 NNT 1193
consensus_6065#1 ---
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||