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Anopheles gambiae
cluster # 6066 cluster # 6066       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6066#0 length = 995 sequences # 4  
consensus_6066#1 length = 198 sequences # 1  

consensusID : consensus_6066#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 995
fasta sequence
                              [TTTTCTTACATTATTTCTTTTGCTTTGCTCAAGGCTTTGAAACTTGATATTTACTTTTTTTTCTCACTCCGAGCTTAGTTCTGTTAATTTCTTACTGCCTTTTGCATATCCGTGCGCTGACTTTGTTTTTGCTATTGCGTTGCGTAAAATAAGTTGAATTATATTTGAAATGAAATGAAAATCGTATGTGAATTCTGCTTTTTTTAAATCGAAATCAGTGATCCCAATTGGAGGAATAGGAGCGTGAGACCCTACTGGAAAATTGAAGAGATCCACCGAAAGGTTGTGTTTCTATGGATGAGTTTCTTATTGGAAAAAAATGGGTGAAGCAGTAGAAAGGGTTACTCTTCCTTCATTTCACTAGCTTGCGTTGTTTGCGGTTGAACTTTGGAAAATTGTTGCAAAAACATCAGAAAGAGCATGCGATAGCTGACAGCAGGTGTAAGACAAGATGAAAAATCAATTACATTTCATCCCAACCTA-AAATAG-AG-CGAATAT-TTGCGATATCGAA-CCAGCCG-CTTCAGCAGCAGCT-GACTTAAGCA-AACT-AAGCGAGAAACTATTTTCTCTGCTACATAAACCTGCTCTCGGAGGTTCTCCTACCGTGTATCGGTCGGTCGGGTGCAGTG-CATAG-AAGGAAGAGACGAGGCGA-CACGAACAAAAC-AAAGCAAAAAAGCAACTAATAT-CTACGAAACAAAACTACAATATTACACAGAAACACACACATATATACATATATTTGCGGCTAGTTAAGAGGCGATGTGGGAGCCTTAACGCGTGGAAGGGCCCGGAAGAAAAACCCACGATGATGAATTACTATTACGCATGGATGATAATGATGATGATGATGATGATTGGACTAAACGAACAAACTCT-CGATATATGACGATGCTGATGATGATGATAATGAAGATGAAAC-ATGAAAAATGAATGATGAAATAAACCCGTATTCACATGATCGTGT-GAACGGATGGAAAAATTAAAAAAAGGGCAGCATG]

[+] EMBL AGA285101            [TTTTCTTACATTATTTCTTTTGCTTTGCTCAAGGCTTTGAAACTTGATATTTACTTTTTTTTCTCACTCCGAGCTTAGTTCTGTTAATTTCTTACTGCCTTTTGCATATCCGTGCGCTGACTTTGTTTTTGCTATTGCGTTGCGTAAAATAAGTTGAATTATATTTGAAATGAAATGAAAATCGTATGTGAATTCTGCTTTTTTTAAATCGAAATCAGTGATCCCAATTGGAGGAATAGGAGCGTGAGACCCTACTGGAAAATTGAAGAGATCCACCGAAAGGTTGTGTTTCTATGGATGAGTTTCTTATTGGAAAAAAATGGGTGAAGCAGTAGAAAGGGTTACTCTTCCTTCATTTCACTAGCTTGCGTTGTTTGCGGTTGAACTTTGGAAAATTGTTGCAAAAACATCAGAAAGAGCATGCGATAGCTGACAGCAGGTGTAAGACAAGATGAAAAATCAATTACATTTCATCCCAACCTA AAATAG AA CGAATAT TT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BX627374             [                                                                                                                                                                                                                             TCCCAATTGGAGGAATAGGAGCGTGAGACCCTACTGGAAAATTGAAGAGATCCACCGAAAGGTTGTGTTTCTATGGATGAGTTTCTTATTGGAAAAAAATGGGTGAAGCAGTAGAAAGGGTTACTCTTCCTTCATTTCACTAGCTTGCGTTGTTTGCGGTTGAACTTTGGAAAATTGTTGCAAAAACATCAGAAAGAGCATGCGATAGCTGACAGCAGGTGTAAGACAAGATGAAAAATCAATTACATTTCATCCCAACCTA AAATAG AG CGAATAT TTGCGATATCGAA CCAGCCG CTTCAGCAGCAGCT GACTTAAGCA AACT AAGCGAGAAACTATTTTCTCTGCTACATAAACCTGCTCTCGGAGGTTCTCCTACCGTGTATCGGTCGGTCGGGTGCAGTG CATAG AAGGAAGAGACGAGGCGA CACGAACAAAAC AAAGCAAAAAAGCAACTAATAT CTACGAAACAAAACTACAATATTACACAGAAACACACACATATATACATATATTTGCGGCTAGTTAAGAGGCGATGTGGGAGCCTTAACGCGTGGAAGGGCCCGGAAGAAAAACCCACGATGATGAATTACTATTACGCATGGATGATAATGATGATGATGATGATGATTGGACTAAACGAACAAACTCT CGATATATGACGATGCTGATGATGATGATAATGAAGATGAAAC ATGAAAAATGAATGATGAAATAAACCCGTATTCACATGATCGTGT GAACG                             ]
[-] EMBL BX466810             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                         atcCAATTACATTTCATCCCAACCTATAAANAGCAGCCGAATATGTTGCGATATCGAATCCAGCCGTCTTCAGCAGCAGCTGGACTTAAGCATAACTCAAGCGAGNAACTATTTTCTCTGCTACATAAACCTGCTCTCGGAGGTTCTCCTACCGTGTATCGGTCGGTCGGGTGCAGTGTCATAGCAAGGAAGAGACGAGGCGAGCACGGACCAAACGATAGCAAAAAAGCAACTAATATCCTACGAAACATAACTACAATATTACACAGAAACACACACATATATACATATATTTGCGGCTAGTTAAGAGGCGATGTGGGAGCCTTAACGCGTGGAAGGGCCCGGAAG AAAACCCACGATGATGAATTACTATTACGCATGGATGATAATGATGATGATGATGATGATTGGACTAAACGGACNNACTCTGCGATATATGACGATGCTGATGATGATGATAATGAAGATGAAACTATGGAAAATGAATGATGGAATAAACCCGTATTCACATGATCGTGTGGAAC GATGGAAAAATTAAAAAAAGGGCAGCATG]
[-] EMBL AGA283810            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CTATTTTCTCTGCAACATAAACCTGCTCTCGGAGGTTCTCCTACCGTGTATCGGTCGGTCGGGTGCAGTG CATAG AAGGAAGAGACGAGGCGA CACGAACAAAAC AAAGCAAAAAAGCAACTAATAT CTACGAAACAAAACTACAATATTACACAGAAACACACACATATATACATATATTTGCGGCTAGTTAAGAGGCGATGTGGGAGCCTTAACGCGTGGAAGGGCCCGGAAGAAAAACCCACGATGATGAATTACTATTACGCATGGATGATAATGATGATGATGATGATGATTGGACTAAACGAACAAACTCT CGATATATGACGATGCTGATGATGATGATAATGAAGATGAAAC ATGAAAAATGAATGATGAAATAAACCCGTATTCACATGATCGTGT GAAACGATGAAATAAaa                 ]


>consensus_6066#0 TTTTCTTACATTATTTCTTTTGCTTTGCTCAAGGCTTTGAAACTTGATATTTACTTTTTT TTCTCACTCCGAGCTTAGTTCTGTTAATTTCTTACTGCCTTTTGCATATCCGTGCGCTGA CTTTGTTTTTGCTATTGCGTTGCGTAAAATAAGTTGAATTATATTTGAAATGAAATGAAA ATCGTATGTGAATTCTGCTTTTTTTAAATCGAAATCAGTGATCCCAATTGGAGGAATAGG AGCGTGAGACCCTACTGGAAAATTGAAGAGATCCACCGAAAGGTTGTGTTTCTATGGATG AGTTTCTTATTGGAAAAAAATGGGTGAAGCAGTAGAAAGGGTTACTCTTCCTTCATTTCA CTAGCTTGCGTTGTTTGCGGTTGAACTTTGGAAAATTGTTGCAAAAACATCAGAAAGAGC ATGCGATAGCTGACAGCAGGTGTAAGACAAGATGAAAAATCAATTACATTTCATCCCAAC CTAAAATAGAGCGAATATTTGCGATATCGAACCAGCCGCTTCAGCAGCAGCTGACTTAAG CAAACTAAGCGAGAAACTATTTTCTCTGCTACATAAACCTGCTCTCGGAGGTTCTCCTAC CGTGTATCGGTCGGTCGGGTGCAGTGCATAGAAGGAAGAGACGAGGCGACACGAACAAAA CAAAGCAAAAAAGCAACTAATATCTACGAAACAAAACTACAATATTACACAGAAACACAC ACATATATACATATATTTGCGGCTAGTTAAGAGGCGATGTGGGAGCCTTAACGCGTGGAA GGGCCCGGAAGAAAAACCCACGATGATGAATTACTATTACGCATGGATGATAATGATGAT GATGATGATGATTGGACTAAACGAACAAACTCTCGATATATGACGATGCTGATGATGATG ATAATGAAGATGAAACATGAAAAATGAATGATGAAATAAACCCGTATTCACATGATCGTG TGAACGGATGGAAAAATTAAAAAAAGGGCAGCATG



consensusID : consensus_6066#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 198
fasta sequence
                              [CAGCGTATTTCTAACACACACTCTTTAGTTTGTTGTTTTATCTAGCTTTTCTTACTTTATTTCTTTGCTTGCTCAAGGCTTTGAAACTTGATATTTACTTTTTTTTCTCACTCCGAGCTTAGTTCTGTTAATTTCTTACTGCCTTTTGCATATCCGTGCGCTCACGAGGGACTTGTTTTTGCTATTGCGTTGCGTAAA]

[+] EMBL AL930703             [CAGCGTATTTCTAACACACACTCTTTAGTTTGTTGTTTTATCTAGCTTTTCTTACTTTATTTCTTTGCTTGCTCAAGGCTTTGAAACTTGATATTTACTTTTTTTTCTCACTCCGAGCTTAGTTCTGTTAATTTCTTACTGCCTTTTGCATATCCGTGCGCTCACGAGGGACTTGTTTTTGCTATTGCGTTGCGTAAA]


>consensus_6066#1 CAGCGTATTTCTAACACACACTCTTTAGTTTGTTGTTTTATCTAGCTTTTCTTACTTTAT TTCTTTGCTTGCTCAAGGCTTTGAAACTTGATATTTACTTTTTTTTCTCACTCCGAGCTT AGTTCTGTTAATTTCTTACTGCCTTTTGCATATCCGTGCGCTCACGAGGGACTTGTTTTT GCTATTGCGTTGCGTAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6066#0      ----------------------------------------------TTTTCTTACATTAT 14
consensus_6066#1      CAGCGTATTTCTAACACACACTCTTTAGTTTGTTGTTTTATCTAGCTTTTCTTACTTTAT 60
                                                                    ********* ****

consensus_6066#0      TTCTTTTGCTTTGCTCAAGGCTTTGAAACTTGATATTTACTTTTTTTTCTCACTCCGAGC 74
consensus_6066#1      TTCTTTG--CTTGCTCAAGGCTTTGAAACTTGATATTTACTTTTTTTTCTCACTCCGAGC 118
                      ******    **************************************************

consensus_6066#0      TTAGTTCTGTTAATTTCTTACTGCCTTTTGCATATCCGTGCGCTGAC------TTTGTTT 128
consensus_6066#1      TTAGTTCTGTTAATTTCTTACTGCCTTTTGCATATCCGTGCGCTCACGAGGGACTTGTTT 178
                      ******************************************** **       ******

consensus_6066#0      TTGCTATTGCGTTGCGTAAAATAAGTTGAATTATATTTGAAATGAAATGAAAATCGTATG 188
consensus_6066#1      TTGCTATTGCGTTGCGTAAA---------------------------------------- 198
                      ********************                                        

consensus_6066#0      TGAATTCTGCTTTTTTTAAATCGAAATCAGTGATCCCAATTGGAGGAATAGGAGCGTGAG 248
consensus_6066#1      ------------------------------------------------------------
                                                                                  

consensus_6066#0      ACCCTACTGGAAAATTGAAGAGATCCACCGAAAGGTTGTGTTTCTATGGATGAGTTTCTT 308
consensus_6066#1      ------------------------------------------------------------
                                                                                  

consensus_6066#0      ATTGGAAAAAAATGGGTGAAGCAGTAGAAAGGGTTACTCTTCCTTCATTTCACTAGCTTG 368
consensus_6066#1      ------------------------------------------------------------
                                                                                  

consensus_6066#0      CGTTGTTTGCGGTTGAACTTTGGAAAATTGTTGCAAAAACATCAGAAAGAGCATGCGATA 428
consensus_6066#1      ------------------------------------------------------------
                                                                                  

consensus_6066#0      GCTGACAGCAGGTGTAAGACAAGATGAAAAATCAATTACATTTCATCCCAACCTAAAATA 488
consensus_6066#1      ------------------------------------------------------------
                                                                                  

consensus_6066#0      GAGCGAATATTTGCGATATCGAACCAGCCGCTTCAGCAGCAGCTGACTTAAGCAAACTAA 548
consensus_6066#1      ------------------------------------------------------------
                                                                                  

consensus_6066#0      GCGAGAAACTATTTTCTCTGCTACATAAACCTGCTCTCGGAGGTTCTCCTACCGTGTATC 608
consensus_6066#1      ------------------------------------------------------------
                                                                                  

consensus_6066#0      GGTCGGTCGGGTGCAGTGCATAGAAGGAAGAGACGAGGCGACACGAACAAAACAAAGCAA 668
consensus_6066#1      ------------------------------------------------------------
                                                                                  

consensus_6066#0      AAAAGCAACTAATATCTACGAAACAAAACTACAATATTACACAGAAACACACACATATAT 728
consensus_6066#1      ------------------------------------------------------------
                                                                                  

consensus_6066#0      ACATATATTTGCGGCTAGTTAAGAGGCGATGTGGGAGCCTTAACGCGTGGAAGGGCCCGG 788
consensus_6066#1      ------------------------------------------------------------
                                                                                  

consensus_6066#0      AAGAAAAACCCACGATGATGAATTACTATTACGCATGGATGATAATGATGATGATGATGA 848
consensus_6066#1      ------------------------------------------------------------
                                                                                  

consensus_6066#0      TGATTGGACTAAACGAACAAACTCTCGATATATGACGATGCTGATGATGATGATAATGAA 908
consensus_6066#1      ------------------------------------------------------------
                                                                                  

consensus_6066#0      GATGAAACATGAAAAATGAATGATGAAATAAACCCGTATTCACATGATCGTGTGAACGGA 968
consensus_6066#1      ------------------------------------------------------------
                                                                                  

consensus_6066#0      TGGAAAAATTAAAAAAAGGGCAGCATG 995
consensus_6066#1      ---------------------------
                                                 




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)