These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6067#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1261 fasta sequence [CCGCCCACGCGTCCGGCAACACACAGAGTCACGAGAAGTTTTCTCCCTCGCCTCGAATGTGATTTCGAGAAAAAGACGGACTTTTTGGTGCAGATATCAGCAATACACTCCTTCGTCTACGCACAATGGATAACGGCAACCGGCGGTGGCACCACAAATCGACGGAACAGGCGACTTTCTAGCCGCTAAAACCGTGTGCCGTGTTGGACCGATTGGTGGCTGGGCAGATAGCTTTCGATAGGACCGTTCCATGCCATGAAGGACACTGGAGAACGGGGAAGGCGTTGCAGTGCAAAACGAAGGATTATTGGCTCCGGTAGTAGTGGTCGACTAAAGCAACGGTGAACCACAAACGCACAACGAACCTAGGAAGGAAAGCTGCTAACACAACCAGTTGACCTGTGCTGACCCTAGGCACGGCCACACTGCCATACATCATCAAGGTCACAGCCACATCCGGCAGCAGGTTGCTTTTAGGTTCGTGATGAAGTACATGCAACATATTTCGCCATCTGTTCAGCAGCTTCTGGTCTGACGTCACTCTCGCCGAAAGGAATTTACTTCATATATATCAGTGCAAATATCAGCACGCACAAAAACACATACACAGTGACTGCCAAACCGGCGATTATCAGCAAGATAAGTCACCGAAGGCACCGTCGTGCCATCAGCTGTTGATAGCGTGCGCATTTGGTTATTTAACAACCAAAGGTAAAGAAGGCAGTTCCGCATAGGAAAAAA---AACACACACACCGTTACCCGCTAGTGAGAAAGATGGCAGACCCTGCAACGAACGGCAAGTTTCTGCGCACCATCGAGTGGGACATGATGGACAAGCGCAAATTTTTCCCACTCTCGATGCTGAGCTCGTTTTCGGTCCGCTGTGCCCTGTATCCGCTGACCGTGATCAAAACGCAGCTCCAGGTACAGTTCCGGAACGACATCTACAAGGGCATGATCGATGCCGGCGTTAAAATCTACCGCGCCGAGGGCGTGCCCGGCCTGTACCGGGGATTCTGGATCTCCTCGGTGCAAATCGTGAGCGGAGTGTTTTACATCAGCACGTACGAAGGGGTCCGGCACGTGCTCGGTCAGTACGGGGCAAACCAGCGGGTAAAATCGCTCGCTGCGGGCGGGTGCGCTTCACTCGTCGGCCAAACCATCATCGTACCGTTCGATGTGATTTCGCAGCACGCGATGGTGCTCGGGATGGGTGCGCACGGTGGCAATAATGGGGCAGTGAACCCGCTCGGTATCAACTT] [+] EMBL BM601996 [CCGCCCACGCGTCCGGCAACACACAGAGTCACGAGAAGTTTTCTCCCTCGCCTCGAATGTGATTTCGAGAAAAAGACGGACTTTTTGGTGCAGATATCAGCAATACACTCCTTCGTCTACGCACAATGGATAACGGCAACCGGCGGTGGCACCACAAATCGACGGAACAGGCGACTTTCTAGCCGCTAAAACCGTGTGCCGTGTTGGACCGATTGGTGGCTGGGCAGATAGCTTTCGATAGGACCGTTCCATGCCATGAAGGACACTGGAGAACGGGGAAGGCGTTGCAGTGCAAAACGAAGGATTATTGGCTCCGGTAGTAGTGGTCGACTAAAGCAACGGTGAACCACAAACGCACAACGAACCTAGGAAGGAAAGCTGCTAACACAACCAGTTGACCTGTGCTGACCCTAGGCACGGCCACACT ] [+] EMBL BM575397 [ ccgCACACAGAGTCACGATAAGTTTTCTCCCTCGCCTCGAATGTGATTTCGAGAAAAAGACGGACTTTTTGGTGCAAATATCAGCAATACACTCCTTCGTCTACGCACAATGGACAACGGCAACCGGCGGTGGCACCACAAATCGACGGAACAGGCGACTTTCTAGCCGCTAAAACCGTGTGCCGTGTTGGACCGATTGGTGGCTGGGCAGATAGCTTTCGATAGGACCGTTCCATGCCATGAAGGACACTGGAGAACGGGGAAGGCGTTGCAGTGCAAAACGAAGGATTATTGGCTCCGGTAGTAGTGGTCGACTAAAGCAACGGTGAACCACAAACGCACAACGAACCTAGGAAGGAAAGCAGCTAACACAACCAGTTGACCTGTGCTGACCCTAGGCACGGCCACACTGCCATACATCATCAAGGTCACAGCCACATCCGGCAGCAGGTTGCTTTTAGGTTCGTGATGAAGTACATGCAACATATTTCGCCATCTGTTCAGCAGCTTCTGGTCTGACGTCACTCTCGCCGAAAGGAATTTACTTCATATATATCAGTGCAAATATCAGCACGCACAAAAACACATACACAGTGACTGCCAAACCGGCGATTATCAGCAAGATAAGTCACCGAAGGCACCGTTGTGCCATCAGCTGTTGATAGCGTGCGCATTTGGTTATTTAACAACCAAAGGTAAA ] [+] EMBL BM589446 [ ccgCGTCACTCTCGCCGAAAGGAATTTACATCATATAAATCAGTGCAAACATCGGCACGCACAAAAACACATACACAGTGACTGCCAAACCGGCGATTATCAGCAAGATAAGTCACCGAAGGCACCGTCGTGCCATCAGCTGTTGATAGCGTGCGCATTTGGTTATTTAACAACCAAAGGTAAAGAAGGCAGTTCCGCATAGGAAAAAA AACACACACACCGTTACCCGCTAGTGAGAAAGATGGCAGACCCTGCAACGAACGGCAAGTTTCTGCGCACCATCGAGTGGGACATGATGGACAAGCGCAAATTTTTCCCACTCTCGATGCTGAGCTCGTTTTCGGTCCGCTGTGCCCTGTATCCGCTGACCGTGATCAAAACGCAGCTCCAGGTACAGTTCCGGAACGACATCTACAAGGGCATGATCGATGCCGGCGTTAAAATCTACCGCGCCGAGGGCGTGCCCGGCCTGTACCGGGGATTCTGGATCTCCTCGGTGCAAATCGTGAGCGGAGTGTTTTACATCAGCACGTACGAAGGGGTCCGGCACGTGCTCGGTCAGTACGGGGCAAACCAGCGGGTAAAATCGCTCGCTGCGGGCGGGTGCGCTTCACTCGTCGGCCAAACCATCATCGTACCGTTCGATGTGATTTCGCAGCACGCGATGGTGCTCGGGATG ] [+] EMBL BM579319 [ ccgGGCGATTATCAGCAAGATAAGTCACTGAAGGCACCGTCGTGCCATCAGCTGTTGATAGCGTGCGCATTTGGTTATTTAACAACCAAAGGTAAAGAAGGCAGTTCCGCATAGGAAAAAAAACAACACACACACCGTTACCCGCTAGTGAGAAAGATGGCAGACCCTGCAACGAACGGCAAGTTTCTGCGCACCATCGAGTGGGACATGATGGACAAGCGCAAATTTTTCCCACTCTCGATGCTGAGCTCGTTTTCGGTCCGCTGTGCGCTGTATCCGCTGACCGTGATCAAAACGCAGCTCCAGGTACAGTTCCGGAACGACATCTACAAGGGCATGATCGATGCCGGCGTTAAAATCTACCGCGCCGAGGGCGTGCCCGGCCTGTACCGGGGATTCTGGATCTCCTCGGTGCAAATCGTGAGCGGAGTGTTTTACATCAGCACGTACGAAGGGGTCCGGCACGTGCTCGGTCAGTACGGGGCAAACCAGCGGGTAAAATCGCTTGCCGCGGGCGGGTGCGCTTCACTCGTCGGCCAAACCATCATCGTACCGTTCGATGTGATTTCGCAGCACGCGATGGTGCTCGGGATGGGTGCGCACGGTGGCAATAATGGGGCAGTGAACCCGCTCGGTATCAACTT] consensusID : consensus_6067#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 238 fasta sequence [CCGCCCACGCGTGCGACGAAATAGGGAAAACGCTCCTGATTGCACTATCTGACGTTCGCTTTCTTTCCCTGCAGGATTATTGGCTCCGGTAGTAGTGGTCGACTAAAGCAACGGTGAACCACAAACGCACAACGAACCTAGGAAGGAAAGCTGCTAACACAACCAGGTGACCTGTGCTGACCCTACGGACGGCCACACTGCCACATACATCATCAAGGTCACAGCCACATCCGGCAGC] [+] EMBL BM608869 [CCGCCCACGCGTGCGACGAAATAGGGAAAACGCTCCTGATTGCACTATCTGACGTTCGCTTTCTTTCCCTGCAGGATTATTGGCTCCGGTAGTAGTGGTCGACTAAAGCAACGGTGAACCACAAACGCACAACGAACCTAGGAAGGAAAGCTGCTAACACAACCAGGTGACCTGTGCTGACCCTACGGACGGCCACACTGCCACATACATCATCAAGGTCACAGCCACATCCGGCAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6067#0 CCGCCCACGCGTCCGGCAACACACAGAGTCACGAGAAGTTTTCTCCCTCGCCTCGAATGT 60 consensus_6067#1 ------------------------------------------------------------ consensus_6067#0 GATTTCGAGAAAAAGACGGACTTTTTGGTGCAGATATCAGCAATACACTCCTTCGTCTAC 120 consensus_6067#1 ------------------------------------------------------------ consensus_6067#0 GCACAATGGATAACGGCAACCGGCGGTGGCACCACAAATCGACGGAACAGGCGACTTTCT 180 consensus_6067#1 ------------------------------------------------------------ consensus_6067#0 AGCCGCTAAAACCGTGTGCCGTGTTGGACCGATTGGTGGCTGGGCAGATAGCTTTCGATA 240 consensus_6067#1 ---------------------------------------CCGCCCAC---GCGTGCGACG 18 * * ** ** * *** consensus_6067#0 GGACCGTTCCA-TGCCATGAAGGACACTGGAGAACGGGGAAGGCGTTGCAGTGCAAAACG 299 consensus_6067#1 AAATAGGGAAAACGCTCCTGATTGCACTATCTGACGTTCGCTTTCTTTCCCTGCA----- 73 * * * ** * **** *** ** * **** consensus_6067#0 AAGGATTATTGGCTCCGGTAGTAGTGGTCGACTAAAGCAACGGTGAACCACAAACGCACA 359 consensus_6067#1 --GGATTATTGGCTCCGGTAGTAGTGGTCGACTAAAGCAACGGTGAACCACAAACGCACA 131 ********************************************************** consensus_6067#0 ACGAACCTAGGAAGGAAAGCTGCTAACACAACCAGTTGACCTGTGCTGACCCTAGGCACG 419 consensus_6067#1 ACGAACCTAGGAAGGAAAGCTGCTAACACAACCAGGTGACCTGTGCTGACCCTACGGACG 191 *********************************** ****************** * *** consensus_6067#0 GCCACACTGCCA--TACATCATCAAGGTCACAGCCACATCCGGCAGCAGGTTGCTTTTAG 477 consensus_6067#1 GCCACACTGCCACATACATCATCAAGGTCACAGCCACATCCGGCAGC------------- 238 ************ ********************************* consensus_6067#0 GTTCGTGATGAAGTACATGCAACATATTTCGCCATCTGTTCAGCAGCTTCTGGTCTGACG 537 consensus_6067#1 ------------------------------------------------------------ consensus_6067#0 TCACTCTCGCCGAAAGGAATTTACTTCATATATATCAGTGCAAATATCAGCACGCACAAA 597 consensus_6067#1 ------------------------------------------------------------ consensus_6067#0 AACACATACACAGTGACTGCCAAACCGGCGATTATCAGCAAGATAAGTCACCGAAGGCAC 657 consensus_6067#1 ------------------------------------------------------------ consensus_6067#0 CGTCGTGCCATCAGCTGTTGATAGCGTGCGCATTTGGTTATTTAACAACCAAAGGTAAAG 717 consensus_6067#1 ------------------------------------------------------------ consensus_6067#0 AAGGCAGTTCCGCATAGGAAAAAAAACACACACACCGTTACCCGCTAGTGAGAAAGATGG 777 consensus_6067#1 ------------------------------------------------------------ consensus_6067#0 CAGACCCTGCAACGAACGGCAAGTTTCTGCGCACCATCGAGTGGGACATGATGGACAAGC 837 consensus_6067#1 ------------------------------------------------------------ consensus_6067#0 GCAAATTTTTCCCACTCTCGATGCTGAGCTCGTTTTCGGTCCGCTGTGCCCTGTATCCGC 897 consensus_6067#1 ------------------------------------------------------------ consensus_6067#0 TGACCGTGATCAAAACGCAGCTCCAGGTACAGTTCCGGAACGACATCTACAAGGGCATGA 957 consensus_6067#1 ------------------------------------------------------------ consensus_6067#0 TCGATGCCGGCGTTAAAATCTACCGCGCCGAGGGCGTGCCCGGCCTGTACCGGGGATTCT 1017 consensus_6067#1 ------------------------------------------------------------ consensus_6067#0 GGATCTCCTCGGTGCAAATCGTGAGCGGAGTGTTTTACATCAGCACGTACGAAGGGGTCC 1077 consensus_6067#1 ------------------------------------------------------------ consensus_6067#0 GGCACGTGCTCGGTCAGTACGGGGCAAACCAGCGGGTAAAATCGCTCGCTGCGGGCGGGT 1137 consensus_6067#1 ------------------------------------------------------------ consensus_6067#0 GCGCTTCACTCGTCGGCCAAACCATCATCGTACCGTTCGATGTGATTTCGCAGCACGCGA 1197 consensus_6067#1 ------------------------------------------------------------ consensus_6067#0 TGGTGCTCGGGATGGGTGCGCACGGTGGCAATAATGGGGCAGTGAACCCGCTCGGTATCA 1257 consensus_6067#1 ------------------------------------------------------------ consensus_6067#0 ACTT 1261 consensus_6067#1 ---- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||