These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6069#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1234 fasta sequence [TAGCGCGTCTGATTAAAAATAAGGAGCAATCGTTTGGCCAATCTCCACGGGTGCTAAGCCTCGACGACTATTTTCTGGTCGATAAAGAGGAGGAGGAGAAAGATCCCGTGACGGGAAGGATCACAAAGCTTACTAGATCGGTGTACGAGTTTGATGCGGAAATGGAGGATGTGTATGTGCAGAATCTGCTGAAAGCATTCAAGCGTACGATTTCGGAGCGATTGTTCGATTTTGTGATTGTCGATTGTTGCAACCATCGGCTGGAAACTTACTGTGAATTTCACAATTACGCGCGAAGCAACGGTTTTAAGGTGTACACCTGCACGATGCAAACGGATGTCGAAGATTGTGCCCGGCAAAATATTCACAATCGAACGGAGGCGGAGATTCAAGCGTACGCCGACAATTGGGCCATGGCTCCGGACGATCACGTGCAAATAAATTTCAACTCTCTGCTGGAACCGGAGCTACAGGAAGAAACGGACACGATGGTGGCCGATATGGAACTAGTCGGGGCCGATGAGGAGGAGCCATACGGAGTGGACGACCAGGGCCTGTTGGAACAAATCAGTACATCACACGACGACAGTAACGACAGCTTTGCNGATGGTACTGCTGAGCGAGGCTGGATGGTACCAGCAAACCCTTGAAGCGACCACCCACACTGGAGGACTATCTGCAGCTGGACGACGGGAATGCCGACGAGCAGCAGGAGGACGAATGCCAGTACGGCTTCTCAAAGTCCGGCGGGAAGAANAAACGCGTACGATGGGCCGATGTCGAGGAGCGCAAAGCGCAGGAAAAGATGCGTCAGCTAGGATTCGTGGTCGGCGTCACGGACTGGAGGCGCATGATGGACCCGTCCGAAGGATCCAGTGCGCTCACGCAAACGAAGTACATCGAGAGGGTGAAGAAACAGTCCTAGGAGGACGGACGTTTCAGTTACGCTGAATGTAGTAAGTGAGATGTAGGGTCAGCTTCAATGGACTGATTTGGGATTTCCCCGTTGAATGTGAGTGGAAGGAAACTAGGAAACATTGTGCACACGCATACTAATCGATCATTATTGCAGGTGTGTCGAGCAAGGTGTGTCGCATAATATGTTTTGTATGTTTGTGTGTGTGTATTTTTCGGTTTTCATACACCGAACAAGGACGGTGTTGGAACTTCAGCAATTAGTAAGACAAATCGTGTTTTATTGGCAGTTATGTACGGTATGCTACACGCGAGAGCG] [+] EMBL BX627478 [TAGCGCGTCTGATTAAAAATAAGGAGCAATCGTTTGGCCAATCTCCACGGGTGCTAAGCCTCGACGACTATTTTCTGGTCGATAAAGAGGAGGAGGAGAAAGATCCCGTGACGGGAAGGATCACAAAGCTTACTAGATCGGTGTACGAGTTTGATGCGGAAATGGAGGATGTGTATGTGCAGAATCTGCTGAAAGCATTCAAGCGTACGATTTCGGAGCGATTGTTCGATTTTGTGATTGTCGATTGTTGCAACCATCGGCTGGAAACTTACTGTGAATTTCACAATTACGCGCGAAGCAACGGTTTTAAGGTGTACACCTGCACGATGCAAACGGATGTCGAAGATTGTGCCCGGCAAAATATTCACAATCGAACGGAGGCGGAGATTCAAGCGTACGCCGACAATTGGGCCATGGCTCCGGACGATCACGTGCAAATAAATTTCAACTCTCTGCTGGAACCGGAGCTACAGGAAGAAACGGACACGATGGTGGCCGATATGGAACTAGTCGGGGCCGATGAGGAGGAGCCATACGGAGTGGACGACCAGGGCCTGTTGGAACAAATCAGTACATCACACGACGACAGTAACGACAGCTTTGCNGATGGTACTGCTGAGCGAAGCTGGA ] [+] EMBL BX623843 [ CTCGACGACTATTTTCTGGTCGATAAAGAGGAGGAGGAGAAAGATCCCGTGACGGGAAGGATCACAAAGCTTACTAGATCGGTGTACGAGTTTGATGCGGAAATGGAGGATGTGTATGTGCAGAATCTGCTGAAAGCATTCAAGCGTACGATTTCGGAGCGATTGTTCGATTTTGTGATTGTCGATTGTTGCAACCATCGGCTGGAAACTTACTGTGAATTTCACAATTACGCGCGAAGCAACGGTTTTAAGGTGTACACCTGCACGATGCAAACGGATGTCGAAGATTGTGCCCGGCAAAATATTCACAATCGAACGGAGGCGGAGATTCAAGCGTACGCCGACAATTGGGCCATGGCTCCGGACGATCACGTGCAAATAAATTTCAACTCTCTGCTGGAACCGGAGCTACAGGAAGAAACGGACACGATGGTGGCCGATATGGAACTAGTCGGGGCCGATGAGGAGGAGCCATACGGAGTGGACGACCAGGGCCTGTTGGAACAAATCAGTACATCACACGACGACAGTAACGACAGCTTTGCGGATGGTACTGCTGAGCGAGGCTGGATGGTACCAGCAAACCCTTGAAGCGACCACCCACACTGGAGGACTATCTGCAGCTGGACGACGGGAATGCCGACGAGCAGCAGGAGGACGAATGCCAGTACGGCTTCTCAAAGTCCGGCGGGAAGAANAAACGCGTACGATGGGCCGATGTCGAGGAGC ] [+] EMBL BX615900 [ tAGCGAGGCTGGATGGTACCAGCAAACCCTTGAAGCGACCACCCACACTGGAGGACTATCTGCAGCTGGACGACGGGAATGCCGACGAGCAGCAGGAGGACGAATGCCAGGACGGCTTCTCAAAGTCCGGCGGGAAGAAGAAACGCTTACGATGGGCCGATGTC GGAGCGCAAAGCGCAGGAAAAGATGCGTCAGCTAGGATTCGTGGTCGGCGTCACGGACTGGAGGCGCATGATGGACCCGTCCGAAGGATCCAGTGCGCTCACGCAAACGAAGTACATCGAGAGGGTGAAGAAACAGTCCTAGGAGGACGGACGTTTCAGTTACGCTGAATGTAGTAAGTGAGATGTAGGGTCAGCTTCAATGGACTGATTTGGGATTTCCCCGTTGAATGTGAGTGGAAGGAAACTAGGAAACATTGTGCACACGCATACTAATCGATCATTATTGCAGGTGTGTCGAGCAAGGTGTGTCGCATAATATGTTTTGTATGTTTGTGTGTGTGTATTTTTCGGTTTTCATACACCGAACAAGGACGGTGTTGGAACTTCAGCAATTAGTAAGACAAATCGTGTTTTATTGGCAGTTATGTACGGTATGCTACACGCGAGAGCG] consensusID : consensus_6069#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 726 fasta sequence [CACGTGCACGATGCAAACGGATGTCGAAGATTGTGCCCGGCAAAATATTCACAATCGAACGGAGGCGGAGATTCAAGCGTACGCCGACAATTGGGCAATGGCTCCGGACGATCACGTGCAAATAAACTTCAACTCTCTGCTGGAACCGGAGCTACAGGAAGAAACGGACACGATGGTGGCCGATATGGAACTAGTCGAGGCCGATGAGGAGGAGCCGTACGGAGCAGACGACCAGGGCCTGTTGGAACAAATCAGTACATCACACGACGACAGTAACGACAGCTTTGCGGATGGTACTGCTGAGTGTGACTTGTTCGCGAGTAAATGGGACCACGACGCCAGTGAGCAGAATTTAGCGAGGCTGGATGGTACCAGCAAACCCTTGAAGCGACCACCCACACTGGAGGACTATCTGCAGCTGGACGACGGGAATGCCGACGAGCAGCAGGAGGACGAATGCCAGGACGGCTTCTCAAAGTCCGGCGGGAAGAAGAAACGCGTACGATGGGCCGATGTCGAGGAGCGCAAAGCGCAGGAAAAGATGCGTCAGCTAGGATTCGTGGTCGGCGTCACGGACTGGAGGCGCATGATGGACCCGTCCGAAGGATCCAGTGCGCTCACGCAAACGAAGTACATCGAGAGGGTGAAGAAACAGTCCTAGGAGGACGGACGTTTCAGTTACGCTGAATGTAGTAAGTGAGATGTAGGGTCAGCTTCAATGGACTG] [+] EMBL BX616992 [CACGTGCACGATGCAAACGGATGTCGAAGATTGTGCCCGGCAAAATATTCACAATCGAACGGAGGCGGAGATTCAAGCGTACGCCGACAATTGGGCAATGGCTCCGGACGATCACGTGCAAATAAACTTCAACTCTCTGCTGGAACCGGAGCTACAGGAAGAAACGGACACGATGGTGGCCGATATGGAACTAGTCGAGGCCGATGAGGAGGAGCCGTACGGAGCAGACGACCAGGGCCTGTTGGAACAAATCAGTACATCACACGACGACAGTAACGACAGCTTTGCGGATGGTACTGCTGAGTGTGACTTGTTCGCGAGTAAATGGGACCACGACGCCAGTGAGCAGAATTTAGCGAGGCTGGATGGTACCAGCAAACCCTTGAAGCGACCACCCACACTGGAGGACTATCTGCAGCTGGACGACGGGAATGCCGACGAGCAGCAGGAGGACGAATGCCAGGACGGCTTCTCAAAGTCCGGCGGGAAGAAGAAACGCGTACGATGGGCCGATGTCGAGGAGCGCAAAGCGCAGGAAAAGATGCGTCAGCTAGGATTCGTGGTCGGCGTCACGGACTGGAGGCGCATGATGGACCCGTCCGAAGGATCCAGTGCGCTCACGCAAACGAAGTACATCGAGAGGGTGAAGAAACAGTCCTAGGAGGACGGACGTTTCAGTTACGCTGAATGTAGTAAGTGAGATGTAGGGTCAGCTTCAATGGACTG] consensusID : consensus_6069#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 671 fasta sequence [CGCCCTGAGGTTTATGACCAGTGCCTGTTGGAACAAATCAGTACATCACACGACGACAGTAACGACAGCTTTGCGGATGGTACTGCTGAGCGAGGCTGGATGGTACCAGCAAACCCTTGAAGCTGACACCCACACTGGAGTGACTATACTGCAGCTGGACGACGTGGAATGNCGACGAGCAGCAGTGAGTGACGACATGCCAGGACTGNGCTTCTCAAANGCTCCTGGCGGGAAGAAGAAACTGCGTACTGATGTGTGCCTGATGTCTGAGGAGCGCAAAGCTGCAGTGNACAAGATGCGTCAGCTAGGATTCTGTGGTACGTGCNGTCACTGGACTGTGAGTGCTGCATGATGGACCCGTACCGAAGTGATACCAGCTGCGCTTACNNGCAAACGAAGTACATCGAGAGTGGTGAACGAAACAGTCCTTAGCGANTGACTGGACCTATTACAGNTATACGCTGCAACTGTAGTAAGTNTGCAGATGTAGAGTGNGTGAGCTTCAAATTGGACTCGCATTACTTGGGGGGATATAACCCCCCCGCTTGACATTGTNGCAAGCTTAGGCAAATGTGAAACTCAGAGGAACACATNTGTCGCACACGCATAACTAAATCCGCACTCACACTCACTCTGCANGTGATGTGTACGCAGCAANGTGTTGTACCGCA] [+] EMBL AL930261 [CGCCCTGAGGTTTATGACCAGTGCCTGTTGGAACAAATCAGTACATCACACGACGACAGTAACGACAGCTTTGCGGATGGTACTGCTGAGCGAGGCTGGATGGTACCAGCAAACCCTTGAAGCTGACACCCACACTGGAGTGACTATACTGCAGCTGGACGACGTGGAATGNCGACGAGCAGCAGTGAGTGACGACATGCCAGGACTGNGCTTCTCAAANGCTCCTGGCGGGAAGAAGAAACTGCGTACTGATGTGTGCCTGATGTCTGAGGAGCGCAAAGCTGCAGTGNACAAGATGCGTCAGCTAGGATTCTGTGGTACGTGCNGTCACTGGACTGTGAGTGCTGCATGATGGACCCGTACCGAAGTGATACCAGCTGCGCTTACNNGCAAACGAAGTACATCGAGAGTGGTGAACGAAACAGTCCTTAGCGANTGACTGGACCTATTACAGNTATACGCTGCAACTGTAGTAAGTNTGCAGATGTAGAGTGNGTGAGCTTCAAATTGGACTCGCATTACTTGGGGGGATATAACCCCCCCGCTTGACATTGTNGCAAGCTTAGGCAAATGTGAAACTCAGAGGAACACATNTGTCGCACACGCATAACTAAATCCGCACTCACACTCACTCTGCANGTGATGTGTACGCAGCAANGTGTTGTACCGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6069#0 TAGCGCGTCTGATTAAAAATAAGGAGCAATCGTTTGGCCAATCTCCACGGGTGCTAAGCC 60 consensus_6069#1 ------------------------------------------------------------ consensus_6069#2 ------------------------------------------------------------ consensus_6069#0 TCGACGACTATTTTCTGGTCGATAAAGAGGAGGAGGAGAAAGATCCCGTGACGGGAAGGA 120 consensus_6069#1 ------------------------------------------------------------ consensus_6069#2 ------------------------------------------------------------ consensus_6069#0 TCACAAAGCTTACTAGATCGGTGTACGAGTTTGATGCGGAAATGGAGGATGTGTATGTGC 180 consensus_6069#1 ------------------------------------------------------------ consensus_6069#2 ------------------------------------------------------------ consensus_6069#0 AGAATCTGCTGAAAGCATTCAAGCGTACGATTTCGGAGCGATTGTTCGATTTTGTGATTG 240 consensus_6069#1 ------------------------------------------------------------ consensus_6069#2 ------------------------------------------------------------ consensus_6069#0 TCGATTGTTGCAACCATCGGCTGGAAACTTACTGTGAATTTCACAATTACGCGCGAAGCA 300 consensus_6069#1 ------------------------------------------------------------ consensus_6069#2 ------------------------------------------------------------ consensus_6069#0 ACGGTTTTAAGGTGTACACCTGCACGATGCAAACGGATGTCGAAGATTGTGCCCGGCAAA 360 consensus_6069#1 ----------------CACGTGCACGATGCAAACGGATGTCGAAGATTGTGCCCGGCAAA 44 consensus_6069#2 ------------------------------------------------------------ consensus_6069#0 ATATTCACAATCGAACGGAGGCGGAGATTCAAGCGTACGCCGACAATTGGGCCATGGCTC 420 consensus_6069#1 ATATTCACAATCGAACGGAGGCGGAGATTCAAGCGTACGCCGACAATTGGGCAATGGCTC 104 consensus_6069#2 ------------------------------------------------------------ consensus_6069#0 CGGACGATCACGTGCAAATAAATTTCAACTCTCTGCTGGAACCGGAGCTACAGGAAGAAA 480 consensus_6069#1 CGGACGATCACGTGCAAATAAACTTCAACTCTCTGCTGGAACCGGAGCTACAGGAAGAAA 164 consensus_6069#2 ------------------------------------------------------------ consensus_6069#0 CGGACACGATGGTGGCCGATATGGAACTAGTCGGGGCCGATGAGGAGGAGCCATACGGAG 540 consensus_6069#1 CGGACACGATGGTGGCCGATATGGAACTAGTCGAGGCCGATGAGGAGGAGCCGTACGGAG 224 consensus_6069#2 --------------------------------------------------CGCCCTGAGG 10 * * * consensus_6069#0 TGGACGACCAGGGCCTGTTGGAACAAATCAGTACATCACACGACGACAGTAACGACAGCT 600 consensus_6069#1 CAGACGACCAGGGCCTGTTGGAACAAATCAGTACATCACACGACGACAGTAACGACAGCT 284 consensus_6069#2 TTTATGACCAGTGCCTGTTGGAACAAATCAGTACATCACACGACGACAGTAACGACAGCT 70 * ****** ************************************************ consensus_6069#0 TTGCNGATGGTACTGCTGAG---------------------------------------- 620 consensus_6069#1 TTGCGGATGGTACTGCTGAGTGTGACTTGTTCGCGAGTAAATGGGACCACGACGCCAGTG 344 consensus_6069#2 TTGCGGATGGTACTGCTGAG---------------------------------------- 90 **** *************** consensus_6069#0 ------------CGAGGCTGGATGGTACCAGCAAACCCTTGAAGCGACCACCCACACTGG 668 consensus_6069#1 AGCAGAATTTAGCGAGGCTGGATGGTACCAGCAAACCCTTGAAGCGACCACCCACACTGG 404 consensus_6069#2 ------------CGAGGCTGGATGGTACCAGCAAACCCTTGAAGCTGACACCCACACTGG 138 ********************************* ************ consensus_6069#0 AG-GACTAT-CTGCAGCTGGACGACG-GGAATGCCGACGAGCAGCAG-GAG-GACGA-AT 722 consensus_6069#1 AG-GACTAT-CTGCAGCTGGACGACG-GGAATGCCGACGAGCAGCAG-GAG-GACGA-AT 458 consensus_6069#2 AGTGACTATACTGCAGCTGGACGACGTGGAATGNCGACGAGCAGCAGTGAGTGACGACAT 198 ** ****** **************** ****** ************* *** ***** ** consensus_6069#0 GCCAGTAC--GGCTTCTCAAAG---TCCGGCGGGAAGAANAAAC-GCGTAC-GATGGG-- 773 consensus_6069#1 GCCAGGAC--GGCTTCTCAAAG---TCCGGCGGGAAGAAGAAAC-GCGTAC-GATGGG-- 509 consensus_6069#2 GCCAGGACTGNGCTTCTCAAANGCTCCTGGCGGGAAGAAGAAACTGCGTACTGATGTGTG 258 ***** ** ********** * *********** **** ****** **** * consensus_6069#0 -CCGATGTC-GAGGAGCGCAAAGC-GCAG--GAAAAGATGCGTCAGCTAGGATTC-GTGG 827 consensus_6069#1 -CCGATGTC-GAGGAGCGCAAAGC-GCAG--GAAAAGATGCGTCAGCTAGGATTC-GTGG 563 consensus_6069#2 CCTGATGTCTGAGGAGCGCAAAGCTGCAGTGNACAAGATGCGTCAGCTAGGATTCTGTGG 318 * ****** ************** **** * ********************* **** consensus_6069#0 T---CGGCGTCAC-GGACTGGAGGCGC---ATGATGGACCCGT-CCGAAG-GAT-CCAG- 876 consensus_6069#1 T---CGGCGTCAC-GGACTGGAGGCGC---ATGATGGACCCGT-CCGAAG-GAT-CCAG- 612 consensus_6069#2 TACGTGCNGTCACTGGACTGTGAGTGCTGCATGATGGACCCGTACCGAAGTGATACCAGC 378 * * ***** ****** * ** ************* ****** *** **** consensus_6069#0 TGCGCT--CACGCAAACGAAGTACATCGAGAG-GGTGAA-GAAACAGTCCTAGGAGGACG 932 consensus_6069#1 TGCGCT--CACGCAAACGAAGTACATCGAGAG-GGTGAA-GAAACAGTCCTAGGAGGACG 668 consensus_6069#2 TGCGCTTACNNGCAAACGAAGTACATCGAGAGTGGTGAACGAAACAGTCCTTAGCGANTG 438 ****** * ********************* ****** *********** * * * consensus_6069#0 GACGTTTCAGTTAC-GCTGAATGTAGTAAGTGAGATGTAGGGTCAGCTTCAATG-GACTG 990 consensus_6069#1 GACGTTTCAGTTAC-GCTGAATGTAGTAAGTGAGATGTAGGGTCAGCTTCAATG-GACTG 726 consensus_6069#2 ACTGGACCTATTACAGNTATACGCTGCAACTGTAGTAAGTNTGCAGATGTAGAGTGNGTG 498 * * **** * * * * * ** ** * *** * * * * ** consensus_6069#0 ATTTGGGATTTCCCCGTTGAATGTGAGTGGAAGGAAACTAGGAAACATTGTGCACACGCA 1050 consensus_6069#1 ------------------------------------------------------------ consensus_6069#2 AGCTTCAAATTGGACTC---GCATTACTTGGGGGGATATAACCCCCCCGCTTGACATTGT 555 consensus_6069#0 TACTAATCGATCATTATTGCAGGTGTGTCGAGCAAGGTGTGTCGCATAATATGTTTTGTA 1110 consensus_6069#1 ------------------------------------------------------------ consensus_6069#2 NGCAAGCTTAGGCAAATGTGAAACTCAGAGGAACACATNTGTCGCACACGCATAACTAAA 615 consensus_6069#0 TGTTTGTGTGTGTGTATTTTTCGGTTTTCATACACCGAACAAGG-ACGGTGTTGGAACTT 1169 consensus_6069#1 ------------------------------------------------------------ consensus_6069#2 TCCGCACTCACACTCACTCTGCANGTGATGTGTACGCAGCAANGTGTTGTACCGCA---- 671 consensus_6069#0 CAGCAATTAGTAAGACAAATCGTGTTTTATTGGCAGTTATGTACGGTATGCTACACGCGA 1229 consensus_6069#1 ------------------------------------------------------------ consensus_6069#2 ------------------------------------------------------------ consensus_6069#0 GAGCG 1234 consensus_6069#1 ----- consensus_6069#2 ----- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||