|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6073#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 995 fasta sequence
[AAGCTGAACCGCATCTTCAACTCCTCCACAACGAGTGGCCCTGTACCTGTACACTACTCCATCGAAATAGCCGCCAAAGATGATTTCGACATTGACCAGCTGAAGCGATTAACGCCTCAACCCGTCTTCTGTGCGCTGCCCTGGATTTCGGACGATAATCTTCGTTACGCGGACGATTTTCTCCGCTCACCGACGCTTCAGTTGACGGCACGGCTTCGCGAAAACCAGTACACCGTCTTGAACAACGTTTCCTGCTACAACATAACTGAACAGCAGGTGGACCAACTTCTCCGCGCTACCGGCATTCGGAACCTGTTCGTCATCCGGGGTGATACCGTCAGTCCGGGCCAGCAATTTCAAAACTCCGCCGGTTTGGTGCAGCATCTGAGGAAATGGCAGGAGCAGCAGCCGAACCACCGCCAGTTTACAATCGCTGTCGGAGGTTATCCTTACGGTCATTACCAGTCATCTTCACAGACCGTGGAATTACACTATCTGCGTGCAAAGATTAGCCAAGGTGCTGATTTCCTGCTCACGCAAACGCTTTACGATGCGCCATCCTTCCTGCGCTACCGGGACCGTTGCAGGGAGGCAGGAATCACCATTCCCATCATACCGGGCATCTACGTTCCGCACTCCTATCGGCATCTGCAAGCGTTGCTGAACCTTACGCGCATCGAGCTGGGACCGACGGTACGGGACGCGTTCGAGGCACACGCGAACGATGCGCCGGATCAGTTCCAAGCGTTTATGGTGGAGTATTTCGTGGGGGTTGTGCGAGAACTGCTGCAAATGAACGCTACCACCTCGAGTGATCCGATAAAGTTGGTGCATTTTTTCACCTTCAATAAGTTCCATCTGCTGCAGGAAGTGCTTGGGAAGCTGGATGAGTTTTTCAAATGAAGTTGCTCCAAACGACGGGAAGATGATCTGCAAGATGAACAAGANGCGGGGATTTAGCGTGTGCCAAAGATGCCTGAGCNATAAAACCTTCG]
[+] EMBL BX615840 [AAGCTGAACCGCATCTTCAACTCCTCCACAACGAGTGGCCCTGTACCTGTACACTACTCCATCGAAATAGCCGCCAAAGATGATTTCGACATTGACCAGCTGAAGCGATTAACGCCTCAACCCGTCTTCTGTGCGCTGCCCTGGATTTCGGACGATAATCTTCGTTACGCGGACGATTTTCTCCGCTCACCGACGCTTCAGTTGACGGCACGGCTTCGCGAAAACCAGTACACCGTCTTGAACAACGTTTCCTGCTACAACATAACTGAACAGCAGGTGGACCAACTTCTCCGCGCTACCGGCATTCGGAACCTGTTCGTCATCCGGGGTGATACCGTCAGTCCGGGCTAGCAATTTCAAAACTCCGCCGGTTTGGTGCAGCATCTGAGGAAATGGCAGGAGCAGCAGCCGAACCACCGCCAGTTTACAATCGCTGTCGGAGGTTATCCTTACGGTCATTACCAGTCATCTTCACAGACCGTGGAATTACACTATCTGCGTGCAAAGATTAGCCAAGGTGCTGATTTCCTGCTCACGCAAACGCTTTACGATGCGCCATCCTTCCTGCGCTACCGGGACCGTTGCAGGGAGGCAGGAATCACCATTCCCATCATACCGGGCATCTACGTTCCGCACTCCTATCGGC ]
[+] EMBL BX629268 [ CCTGCTACAACATAACTGAACAGCAGGTGGACCAACTTCTCCGCGCTACCGGCATTCGGAACCTGTTCGTCATCCGGGGTGATACCGTCAGTCCGGGCCAGCAATTTCAAAACTCCGCCGGTTTGGTGCAGCATCTGAGGAAATGGCAGGAGCAGCAGCCGAACCACCGCCAGTTTACAATCGCTGTCGGAGGTTATCCTTACGGTCATTACCAGTCATCTTCACAGACCGTGGAATTACACTATCTGCGTGCAAAGATTAGCCAAGGTGCTGATTTCCTGCTCACGCAAACGCTTTACGATGCGCCATCCTTCCTGCGCTACCGGGACCGTTGCAGGGAGGCAGGAATCACCATTCCCATCATACCGGGCATCTACGTTCCGCACTCCTATCGGCATCTGCAAGCGTTGCTGAACCTTACGCGCATCGAGCTGGGACCGACGGTACGGGACGCGTTCGAGGCACACGCGAACGATGCGCCGGATCAGTTCCAAGCGTTTATGGTGGAGTATTTCGTGGGGGTTGTGCGAGAACTGCTGCAAATGAACGCTACCACCTCGAGTGATCCGATAAAGTTGGTGCATTTTTTCACCTTCAATAAGTTCCATCTGCTGCAGGAAGTGCTTGGGAAGCTGGATGAGTTTTTCAAATGAAGTTGCTCCAAACGACGGGAAGATGATCTGCAAGATGAACAAGANGCGGGGATTTAGCGTGTGCCAAAGATGCCTGAGCNATAAAACCTTCG]
[+] EMBL BX629161 [ CAACATAACTGAACAGCAGGTGGACCAACTTCTCCGCGCTACCGGCATTCGGAACCTGTTCGTCATCCGGGGTGATACCGTCAGTCCGGGCCAGCAATTTCAAAACTCCGCCGGTTTGGTGCAGCATCTGAGGAAATGGCAGGAGCAGCAGCCGAACCACCGCCAGTTTACAATCGCTGTCGGAGGTTATCCTTACGGTCATTACCAGTCATCTTCACAGACCGTGGAATTACACTATCTGCGTGCAAAGATTAGCCAAGGTGCTGATTTCCTGCTCACGCAAACGCTTTACGATGCGCCATCCTTCCTGCGCTACCGGGACCGTTGCAGGGAGGCAGGAATCACCATTCCCATCATACCGGGCATCTACGTTCCGCACTCCTATCGGCATCTGCAAGCGTTGCTGAACCTTACGCGCATCGAGCTGGGACCGACGGTACGGGACGCGTTCGAGGCACACGCGAACGATGCGCCGGATCAGTTCCAAGCGTTTATGGTGGAGTATTTCGTGGGGGTTGTGCGAGAACTGCTGCAAATGAACGCTACCACCTCGAGTGATCCGATAAAGTTGGTGCATTTTTTCACCTTCAATAAGTTCCATCTGCTGCAGGAAGTGCTTGGGAAGCTGGATGAGTTTTTCAAATGAAGTTGCTCCAAACGACGGGAAGATGATCTGCAAGATGAACAAGANGCGGGGATTTAGCGTGTGCCAAAGATGCCTGAGCNATAAAACCTTCG]
consensusID : consensus_6073#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 707 fasta sequence
[ATCGGCCAGAGGTTTATTTCTGCTACAACATAACTGAACAGCAGGTGGACCAACTTCTCCGCGCTACCGGCATTCGGAACCTGTTCGTCATCCGGGGTGATACCGTCAGTCCGGGCCAGCAATTTCAAAACTCCGCCGGTTTGGTGCAGCATCTGAGGAAATGGCAGGAGCAGCAGCCGAACCACCGCAGTTTACAATCGCTGTCGGAGGTTATCCTTACGGTCATTACCAGTCATCTTCACAGACCGTGGAATTACACTATCTGCGTGCAAAGATTAGCAAGGTGCTGATTTCCTGTCACGCAAACGCTTTACGATGACGCCATACCTTCCTGCGCTACCGGGACCGTTTGCAGGGGAGGCAGGAATCACACATTCCCATCATACCGGGCATCTAACGTTCCGNAGCTCCTATCGGCGATCTGAAAGCCGTTGCTGAACCTTACGCGCATCGAGCTGGGACCGACGGTACGGGACAGCGCTTCGAAGGCACACGCGAANCGAATGCNAGCCGGGATCAGTTCCCAACGCCGTTCACTGGTGGGANGGTATATCCCGCGCAGAGGNTTGTGCGAGAACTGATGCGAACACTGAACGCTAACAACACCTCGAAGTGATACCGGAGTCAAAGTTGGTGCCTATCANTCACACCTTCACACTCAAGTTCCATCCTGCTTGCACGCAAGTGCTCTGGCAACGCTGGGNTCG]
[+] EMBL AL696195 [ATCGGCCAGAGGTTTATTTCTGCTACAACATAACTGAACAGCAGGTGGACCAACTTCTCCGCGCTACCGGCATTCGGAACCTGTTCGTCATCCGGGGTGATACCGTCAGTCCGGGCCAGCAATTTCAAAACTCCGCCGGTTTGGTGCAGCATCTGAGGAAATGGCAGGAGCAGCAGCCGAACCACCGCAGTTTACAATCGCTGTCGGAGGTTATCCTTACGGTCATTACCAGTCATCTTCACAGACCGTGGAATTACACTATCTGCGTGCAAAGATTAGCAAGGTGCTGATTTCCTGTCACGCAAACGCTTTACGATGACGCCATACCTTCCTGCGCTACCGGGACCGTTTGCAGGGGAGGCAGGAATCACACATTCCCATCATACCGGGCATCTAACGTTCCGNAGCTCCTATCGGCGATCTGAAAGCCGTTGCTGAACCTTACGCGCATCGAGCTGGGACCGACGGTACGGGACAGCGCTTCGAAGGCACACGCGAANCGAATGCNAGCCGGGATCAGTTCCCAACGCCGTTCACTGGTGGGANGGTATATCCCGCGCAGAGGNTTGTGCGAGAACTGATGCGAACACTGAACGCTAACAACACCTCGAAGTGATACCGGAGTCAAAGTTGGTGCCTATCANTCACACCTTCACACTCAAGTTCCATCCTGCTTGCACGCAAGTGCTCTGGCAACGCTGGGNTCG]
consensusID : consensus_6073#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 611 fasta sequence
[AGATCGCCCCGAGGTTGATTCGCGAAAACAGTACACCGTCTTGAACAACGTTTCCTGCTACAACATAACTGAACAGCAGGTGGACCAACTTCTCCGCGCTACCGGCATTCGGAACCTGTTCGTCATCCGGGGTGATACCGTCAGTCCGGGCCAGCAATTTCAAAACTCCGCCGGTTTGGTGCAGCATCTGAGGAAATGGCAGGAGCAGCAGCCGAACCACCGCCAGTTTACAATCGCTGTCGGAGGTTATCCTTACGGTCATTACCAGTCATCTTCACAGACCGTGGAATTACACTATCTGCGTGCAAAGATTAGCCAAGGTGCTGATTTCCTGCTCACGCAAACGCTTTACGATGCGCCATCCTTCCTGCGCTACCGGGACCGTTGCAGGGAGGCAGGAATCACCATTCCCATCATACCGGGCATCTACGTTCCGCACTCCTATCGGCATCTGCAAGCGTTGCTGAACCTTACGCGCATCGAGCTGGGACCGACGGTACGGGACGCGTTCGAGGCACACGCGAACGATGCGCCGGATCAGTTCCAAGCGTTTATGGTGGAGTATTTCGTGGGGGTTGTGCGAGAACTGCTGCAAATGAACGCTACACTCG]
[+] EMBL AL693519 [AGATCGCCCCGAGGTTGATTCGCGAAAACAGTACACCGTCTTGAACAACGTTTCCTGCTACAACATAACTGAACAGCAGGTGGACCAACTTCTCCGCGCTACCGGCATTCGGAACCTGTTCGTCATCCGGGGTGATACCGTCAGTCCGGGCCAGCAATTTCAAAACTCCGCCGGTTTGGTGCAGCATCTGAGGAAATGGCAGGAGCAGCAGCCGAACCACCGCCAGTTTACAATCGCTGTCGGAGGTTATCCTTACGGTCATTACCAGTCATCTTCACAGACCGTGGAATTACACTATCTGCGTGCAAAGATTAGCCAAGGTGCTGATTTCCTGCTCACGCAAACGCTTTACGATGCGCCATCCTTCCTGCGCTACCGGGACCGTTGCAGGGAGGCAGGAATCACCATTCCCATCATACCGGGCATCTACGTTCCGCACTCCTATCGGCATCTGCAAGCGTTGCTGAACCTTACGCGCATCGAGCTGGGACCGACGGTACGGGACGCGTTCGAGGCACACGCGAACGATGCGCCGGATCAGTTCCAAGCGTTTATGGTGGAGTATTTCGTGGGGGTTGTGCGAGAACTGCTGCAAATGAACGCTACACTCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6073#0 AAGCTGAACCGCATCTTCAACTCCTCCACAACGAGTGGCCCTGTACCTGTACACTACTCC 60
consensus_6073#2 ------------------------------------------------------------
consensus_6073#1 ------------------------------------------------------------
consensus_6073#0 ATCGAAATAGCCGCCAAAGATGATTTCGACATTGACCAGCTGAAGCGATTAACGCCTCAA 120
consensus_6073#2 ------------------------------------------------------------
consensus_6073#1 ------------------------------------------------------------
consensus_6073#0 CCCGTCTTCTGTGCGCTGCCCTGGATTTCGGACGATAATCTTCGTTACGCGGACGATTTT 180
consensus_6073#2 ------------------------------------------------------------
consensus_6073#1 ------------------------------------------------------------
consensus_6073#0 CTCCGCTCACCGACGCTTCAGTTGACGGCACGGCTTCGCGAAAACCAGTACACCGTCTTG 240
consensus_6073#2 --------------AGATCGCCC--CGAGGTTGATTCGCGAAAAC-AGTACACCGTCTTG 43
consensus_6073#1 ---------------------------------------------------ATCGGCCAG 9
* ** * *
consensus_6073#0 AACAACGTTTCCTGCTACAACATAACTGAACAGCAGGTGGACCAACTTCTCCGCGCTACC 300
consensus_6073#2 AACAACGTTTCCTGCTACAACATAACTGAACAGCAGGTGGACCAACTTCTCCGCGCTACC 103
consensus_6073#1 AGGTTTATTTC-TGCTACAACATAACTGAACAGCAGGTGGACCAACTTCTCCGCGCTACC 68
* **** ************************************************
consensus_6073#0 GGCATTCGGAACCTGTTCGTCATCCGGGGTGATACCGTCAGTCCGGGCCAGCAATTTCAA 360
consensus_6073#2 GGCATTCGGAACCTGTTCGTCATCCGGGGTGATACCGTCAGTCCGGGCCAGCAATTTCAA 163
consensus_6073#1 GGCATTCGGAACCTGTTCGTCATCCGGGGTGATACCGTCAGTCCGGGCCAGCAATTTCAA 128
************************************************************
consensus_6073#0 AACTCCGCCGGTTTGGTGCAGCATCTGAGGAAATGGCAGGAGCAGCAGCCGAACCACCGC 420
consensus_6073#2 AACTCCGCCGGTTTGGTGCAGCATCTGAGGAAATGGCAGGAGCAGCAGCCGAACCACCGC 223
consensus_6073#1 AACTCCGCCGGTTTGGTGCAGCATCTGAGGAAATGGCAGGAGCAGCAGCCGAACCACCGC 188
************************************************************
consensus_6073#0 CAGTTTACAATCGCTGTCGGAGGTTATCCTTACGGTCATTACCAGTCATCTTCACAGACC 480
consensus_6073#2 CAGTTTACAATCGCTGTCGGAGGTTATCCTTACGGTCATTACCAGTCATCTTCACAGACC 283
consensus_6073#1 -AGTTTACAATCGCTGTCGGAGGTTATCCTTACGGTCATTACCAGTCATCTTCACAGACC 247
***********************************************************
consensus_6073#0 GTGGAATTACACTATCTGCGTGCAAAGATTAGCCAAGGTGCTGATTTCCTGCTCACGCAA 540
consensus_6073#2 GTGGAATTACACTATCTGCGTGCAAAGATTAGCCAAGGTGCTGATTTCCTGCTCACGCAA 343
consensus_6073#1 GTGGAATTACACTATCTGCGTGCAAAGATTAGC-AAGGTGCTGATTTCCTG-TCACGCAA 305
********************************* ***************** ********
consensus_6073#0 ACGCTTTACGATG-CGCCAT-CCTTCCTGCGCTACCGGGACCGTT-GCAGGG-AGGCAGG 596
consensus_6073#2 ACGCTTTACGATG-CGCCAT-CCTTCCTGCGCTACCGGGACCGTT-GCAGGG-AGGCAGG 399
consensus_6073#1 ACGCTTTACGATGACGCCATACCTTCCTGCGCTACCGGGACCGTTTGCAGGGGAGGCAGG 365
************* ****** ************************ ****** *******
consensus_6073#0 AATCAC-CATTCCCATCATACCGGGCATCTA-CGTTCCGCA-CTCCTATCGGC-ATCTGC 652
consensus_6073#2 AATCAC-CATTCCCATCATACCGGGCATCTA-CGTTCCGCA-CTCCTATCGGC-ATCTGC 455
consensus_6073#1 AATCACACATTCCCATCATACCGGGCATCTAACGTTCCGNAGCTCCTATCGGCGATCTGA 425
****** ************************ ******* * *********** *****
consensus_6073#0 AAGC-GTTGCTGAACCTTACGCGCATCGAGCTGGGACCGACGGTACGGGAC---GCGTTC 708
consensus_6073#2 AAGC-GTTGCTGAACCTTACGCGCATCGAGCTGGGACCGACGGTACGGGAC---GCGTTC 511
consensus_6073#1 AAGCCGTTGCTGAACCTTACGCGCATCGAGCTGGGACCGACGGTACGGGACAGCGCTTCG 485
**** ********************************************** ** *
consensus_6073#0 GAGGCACACGCGAAC--GATGCG---CCGGATCAGTTCCAAGCGTT---------TATGG 754
consensus_6073#2 GAGGCACACGCGAAC--GATGCG---CCGGATCAGTTCCAAGCGTT---------TATGG 557
consensus_6073#1 AAGGCACACGCGAANCGAATGCNAGCCGGGATCAGTTCCCAACGCCGTTCACTGGTGGGA 545
************* **** * *********** * ** * *
consensus_6073#0 TGGAGTATTTCGTG---GGGGTTGTGCGAGAACTGCTGCAAA---TGAACGCTACCACCT 808
consensus_6073#2 TGGAGTATTTCGTG---GGGGTTGTGCGAGAACTGCTGCAAA---TGAACGCTACA--CT 609
consensus_6073#1 NGGTATATCCCGCGCAGAGGNTTGTGCGAGAACTGATGCGAACACTGAACGCTAACAACA 605
** *** ** * ** ************** *** ** ********* *
consensus_6073#0 CGAGTGATCCGATAAAGTTGGTGCATTTTTTCACCTTCAATAAGTTCCATCTGCTGCAGG 868
consensus_6073#2 CG---------------------------------------------------------- 611
consensus_6073#1 CCT-CGAAGTGATACCGGAGTCAAAGTTGGTGCCTATCANTCACACCTTCACACTCAAGT 664
*
consensus_6073#0 AAGTGCTTGGGAAGCTGGATGAGTTTTTCAAATGAAGTTGCTCCAAACGACGGGAAGATG 928
consensus_6073#2 ------------------------------------------------------------
consensus_6073#1 TCCATCCTGCTTGCACGCAAGTGCTCTGGCAACGCTGGGNTCG----------------- 707
consensus_6073#0 ATCTGCAAGATGAACAAGANGCGGGGATTTAGCGTGTGCCAAAGATGCCTGAGCNATAAA 988
consensus_6073#2 ------------------------------------------------------------
consensus_6073#1 ------------------------------------------------------------
consensus_6073#0 ACCTTCG 995
consensus_6073#2 -------
consensus_6073#1 -------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||