These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6076#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1091 fasta sequence [CCGATTAAATCACAATGGAAAGGTAACTCCATTTGTCGTTGCGATTAGTGCACCATCGAATGTATCGTGCCAAAAATCGACTCCCTACACAAAGGTTTCGTCCTATGTTCAGTGGATTGTTTCTACAATTCAAGCTAGTGGCGAGCCAGCATGGGAGTGGAAATTTAAAGAAGCCGAATGTGCTCTGCGTTACGTCCATCTAAGGCAGTACCAGAAACAAGTGTTGATCGATCAGACGGACACCTTTGACGTGGTAACACCGGCCAGAAGGCGTTTGGAGCCACGATATACCGATGCAATGGTTGAGATTGGTTACGGAGGCTATTCAGTGAGCCGGGAAGACTGTTATGGGTTGATCATAGATGAGGATACCGTGCTAACGCTGGCCCAGTGCACCACAAACCATGGGAAACGGGCCACGTTTGTAATGTACATGGGAAATGAGCGCAATACCGTGGTGAAACATTACAACCATCCTGGATACCGTGAGGGACAGTATTACAACAACATTGGACTGTTGAAAGTGAGAAGCCGCTTCCTTTTCTTTAGATCTTTCGTCCCGTTTTGTATATGGCATGAGAATGATCTGGCAGATAGCATTGTTGAGCTGACCGGGCACGGGAAGGCGTGATCTTAATTACTTCAGTCTACACAATGCATCGGTGGATGTGTTTGAACCACAAAACTTCCAGTTGGTAGCGCGCGCCAATGTGCTCCCCATAAATAAATGTTCTTATCCGGAAGAGTTTTCAAAGAATCTATCGAACGGTTTGACCGAAGAGCATCTGTGCTTTGACAATGAAGCCTATCTGGTGCCTGAAACATGTCAACAAGCAGCCGGTGGACCAATCGGAGGGAAGAAGTTCAAGTTCAACAAGCAGTTCCGCTATGCGTACGCACTGAACTCATTCGGGCGCGACTGTGGCTTTGGTCGCGCTGCAGTTGGTGTACGCTTGTCGAGCCACATTGACTGGTTGCAATCGGTCCTGCTTCCCGACTACAGGAAAGACAGTGGATCGGTTCACTTCCTACATTCGGAGTTGGANGAGAATGATATTTGCCGGCATGTGGACGGTGCGGAANGGCTGTGT] [+] EMBL BM625073 [CCGATTAAATCACAATGGAAAGGTAACTCCATTTGTCGTTGCGATTAGTGCACCATCGAATGTATCGTGCCAAAAATCGACTCCCTACACAAAGGTTTCGTCCTATGTTCAGTGGATTGTTTCTACAATTCAAGCTAGTGGCGAGCCAGCATGGGAGTGGAAATTTAAAGAAGCCGAATGTGCTCTGCGTTACGTCCATCTAAGGCAGTACCAGAAACAAGTGTTGATCGATCAGACGGACACCTTTGACGTGGTAACACCGGCCAGAAGGCGTTTGGAGCCACGATATACCGATGCAATGGTTGAGATTGGTTACGGAGGCTATTCAGTGAGCCGGGAAGACTGTTATGGGTTGATCATAGATGAGGATACCGTGCTAACGCTGGCCCAGTGCACCACAAACCATGGGAAACGGGCCACGTTTGTAATGTACATGGGAAATGAGCGCAATACCGTGGTGAAACATTACAACCATCCTGGATACCGTGAGGGACAGTATTACAACAACATTGGACTGTTGAAAGTGAGAAGCCGCTTCCTTTTCTTTAGATCTTTCGTCCCGTTTTGTATATGGCATGAGAATGATCTGGCAGATAGCATTGTTGAGCTGACCGGGCACGGGAAGGCGTGATCTTAATTACTTCAGTCTACACAATGCATCGGTGGATGTGTTTGAACCACAAAACTTCCAGTTGGTA ] [+] EMBL BX629043 [ GCCGGGAAGACTGTTATGGGTTGATCATAGACGAAGATACCGTGCTAACGCTGGCCCAGTGTACCACAAACCATGGGAAGCGGGCCACGTTTGTAATGTACATGGGAAATGAGCGCAATACCGTGGTGAAACATTACAACCATCCTGGATACCGTGAGGGACAGTATTACAACAACATTGGACTGTTGAAGGTGAGAAGCCGTTTCGTGTTCTTTAGATCTTTCGTCCCGTTTTGTATATGGCATGAGAATGATCTGGCAGATAGCATTGTTGAGCTGACCGGGCAC GGAAGGCGTGATCTTAATTACTTCACTCTACACAATGCATCGGTGGACGTGTTTGAACCACAAAATTTCCAGCTGATAGCGCGCGCCAATGTGCTCCCCATAAATAAATGTTCTTATCCGGAAGAGTTTTCAAAGAATCTATCGAACGGTTTGACCGAAGAGCATCTGTGCTTTGACAATGAAGCCTATCTGGTGCCTGAAACATGTCAACAAGCAGCCGGTGGACCAATCGGAGGGAAGAAGTTCAAGTTCAACAAGCAGTTCCGCTATGCGTACGCACTGAACTCATTCGGGCGCGACTGTGGCTTTGGTCGCGCTGCAGTTGGTGTACGCTTGTCGAGCCACATTGACTGGTTGCAATCGGTCCTGCTTCCCGACTACAGGAAAGACAGTGGATCGGTTCACTTCCTACATTCGGAGTTGGANGAGAATGATATTTGCCGGCATGTGGACGGTGCGGAANGGCTGTGT] consensusID : consensus_6076#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1023 fasta sequence [CCGGTGACAGCATCGAGAGTAAGATGCTGTGCATAAAGCAAAGTGTAGTGTTTGTTGTTGCATTGCTGTTGAATCGATTCAGCAATGGTGATCGTACGTTTATGGCGTACATGGAGATCGAATTGAACAGGAAGCAAACGATGATGCCCAATGTACGCGAATCGTTAGATGATTGTCATATGCGATACTACAAACACAGTCTGGTGGAAAGTTCTTATCCCGTCTTCCAAAGGCCTCATCAAAAGATGAGCGATTTTCCTCATCTCGGCCGTATTGGTTGGACCGGTACCGATGGAACGGTCCGTTGGAACTGTAGTGGAACGCTGGTGTGGGAAAACTTCATACTAACATCAGCCCGTTGTACAACGGATGGCAACTCTATGGCTCCAGATGTGGTAAGATTGGGTGATTCTGGTGAGATGCAGGAGATAAAGATCGCGGAAGCTGTACACCATCCTGAGTATAGAGAGGGCATTACGCAGCACGACATTGCACTGTTACGTTTGCAGTCAAAAGCGGAATTGGGCTCTGCAATTGTTCCGGCTTGCCTTTGGAACAATGAAGACGTGAAGTTTCACGCTATGACCTTGGCAGGATGGAGTGGCTCAGATGCATCAGACGTTGTTAAAGCTCAAGTCCAACCCACACTCGATGGTTGTGATCGTATGCTAAGTACGGATCTGTGTGTTGAAAGTACTGAATTGGGTTCATGTTTGGACGGTGGCTTTCTTCAGGTACCATTGAATCACAATGGAAGGGTAACTCCATTTGTCGTTGCGATTGGTGCACCATCGAATGTATCGTGCCAAAAATCGACTCCCTACACAAAGGTATCGTCCTATGTTCAGTGGATTGTTTCTACAATTCAAGCTAGTGGCGAGCCAGCATGGGGTTTGTGTACTGTATGATAATAGCTGTAAAGGATATTGAATGTTCTTAAACCTTTCAATTACAGAGTGGAAATTTAAAGAAGCCGAATGTGCTCTGCGTTACGTCCATCTAAGGCAGTACCAGAAACAAGTG] [+] EMBL BM657661 [CCGGTGACAGCATCGAGAGTAAGATGCTGTGCATAAAGCAAAGTGTAGTGTTTGTTGTTGCATTGCTGTTGAATCGATTCAGCAATGGTGATCGTACGTTTATGGCGTACATGGAGATCGAATTGAACAGGAAGCAAACGATGATGCCCAATGTACGCGAATCGTTAGATGATTGTCATATGCGATACTACAAACACAGTCTGGTGGAAAGTTCTTATCCCGTCTTCCAAAGGCCTCATCAAAAGATGAGCGATTTTCCTCATCTCGGCCGTATTGGTTGGACCGGTACCGATGGAACGGTCCGTTGGAACTGTAGTGGAACGCTGGTGTGGGAAAACTTCATACTAACATCAGCCCGTTGTACAACGGATGGCAACTCTATGGCTCCAGATGTGGTAAGATTGGGTGATTCTGGTGAGATGCAGGAGATAAAGATCGCGGAAGCTGTACACCATCCTGAGTATAGAGAGGGCATTACGCAGCACGACATTGCACTGTTACGTTTGCAGTCAAAAGCGGAATTGGGCTCTGCAATTGTTCCGGCTTGCCTTTGGAACAATGAAGACGTGAAGTTTCACGCTATGACCTTGGCAGGATGGAGTGGCTCAGATGCATCAGACGTTGTTAAAGCTCAAGTCCAACCCACACTCGATGGTTGTGATCGTATGCTAAGTACGGATCTGTGTGTTGAAAGTACTGAATTGGGTTCATGTTTGGAC ] [+] EMBL BM619250 [ ccgCTGGTGAGATGCAGGAGATAAAGATCGCGGAAGCTGTACACCATCCTGAGTATAGAGAGGGCATTACGCAGCACGACATTGCACTGTTACGTTTGCAGTCAAAAGCGGAATTGGGCTCTGCAATTGTTCCGGCTTGCCTTTGGAACAATGAAGACGTGAAGTTTCACGCTATGACCTTGGCAGGATGGAGTGGCTCAGATGCATCAGACGTTGTTAAAGCTCAAGTCCAACCCACACTCGATGGTTGTGATCGTATGCTAAGTACGGATCTGTGTGTTGAAAGTACTGAATTGGGTTCATGTTTGGACGGTGGCTTTCTTCAGGTACCATTGAATCACAATGGAAGGGTAACTCCATTTGTCGTTGCGATTGGTGCACCATCGAATGTATCGTGCCAAAAATCGACTCCCTACACAAAGGTATCGTCCTATGTTCAGTGGATTGTTTCTACAATTCAAGCTAGTGGCGAGCCAGCATGGGGTTTGTGTACTGTATGATAATAGCTGTAAAGGATATTGAATGTTCTTAAACCTTTCAATTACAGAGTGGAAATTTAAAGAAGCCGAATGTGCTCTGCGTTACGTCCATCTAAGGCAGTACCAGAAACAAGTG] consensusID : consensus_6076#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 344 fasta sequence [CCCGAGGCTGAGAGCATCTGTGCTTTGGCATGAAGCTATCTGGTGCCAGAAACATGTCAACAAGCAGCCGGTGGACCAATCGGAGGGAAGAAGTTCAAGTTCAACAAGCAGTTCCGCTATGCGTACGCACTGAACTCATTTGGGTGCGACTGTGGCTTTGGTCGCGCTGCAGTTGGTGTACGCTTGTCGAGCCACATTGGCTGGTTGCAATCGGTCCTGCTCCCCGACTACAGGAAAGACAGTGGATCGGTTCACTTCCTACATTCGGAGTTGGAGCAAACGATACCTGCCGGCATGTGAACGGTGCGCCAGGGCTGTGTGTGGAGGCAACCAGATGTCCTAAG] [+] EMBL AL693503 [CCCGAGGCTGAGAGCATCTGTGCTTTGGCATGAAGCTATCTGGTGCCAGAAACATGTCAACAAGCAGCCGGTGGACCAATCGGAGGGAAGAAGTTCAAGTTCAACAAGCAGTTCCGCTATGCGTACGCACTGAACTCATTTGGGTGCGACTGTGGCTTTGGTCGCGCTGCAGTTGGTGTACGCTTGTCGAGCCACATTGGCTGGTTGCAATCGGTCCTGCTCCCCGACTACAGGAAAGACAGTGGATCGGTTCACTTCCTACATTCGGAGTTGGAGCAAACGATACCTGCCGGCATGTGAACGGTGCGCCAGGGCTGTGTGTGGAGGCAACCAGATGTCCTAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6076#0 CCGATTAAATCACAATGGAAAGGTAACTCCATTTGTCGTTGCGATTAGTGCACCATCGAA 60 consensus_6076#2 ------------------------------------------------------------ consensus_6076#1 -------------------CCGGTGACAGCATCGAGAGTAAGATGCTGTGCATAAAGCAA 41 consensus_6076#0 TGTATCGTGCCAAAAATCGACTCCCTACACAAAGGTTTCGTCCTATGTTCAGTGGATTGT 120 consensus_6076#2 ------------------------------------------------------------ consensus_6076#1 AGTGTAGTGTTTGTTGTTGCATTGCTGTTGAATCGATTCAGCA-ATGGTGATCG---TAC 97 consensus_6076#0 TTCTACAATTCAAGCTAGTGGCGAGCCAGCATGGGAGTGGAAATTTAAAGAAGCCGAATG 180 consensus_6076#2 ------------------------------------------------------------ consensus_6076#1 GTTTATGGCGTACATGGAGATCGAATTGAACAGGAAGCAAACGATGATGCCCAATGTACG 157 consensus_6076#0 TGCTCTGCGTTACGTCCATCTAAGGCAGTACCAGAAACAAGTGTTGATCGATCAGACGGA 240 consensus_6076#2 ------------------------------------------------------------ consensus_6076#1 CGAATCGTTAGATGATTGTCATATGCGATACTACAAACACAGTCTGGTGGA--AAGTTCT 215 consensus_6076#0 CACCTTTGACGTGGTAACACCGGCCAGAAGGCGTTTGGAGCCACGATATACCGATGCAAT 300 consensus_6076#2 ------------------------------------------------------------ consensus_6076#1 TATCCCGTCTTCCAAAGGCCTCATCAAAAGATGAGCGATTTTCCTCATCTCGGCCGTATT 275 consensus_6076#0 GGTTGAGATTGGTTACGGAGGCTATTCAGTGAGCCGGGAAGACTGTTATGGGTTGATCAT 360 consensus_6076#2 ------------------------------------------------------------ consensus_6076#1 GGTTG-GACCGGTACCGATGG------AACGGTCCGTTGGAACTGTAGTGGAACGCTGGT 328 consensus_6076#0 AGATGAGGATACCGTGCTAACGCTGGCCCAGTGCACCACAAACCATGGGAAACGGGCCAC 420 consensus_6076#2 ------------------------------------------------------------ consensus_6076#1 GTGGGAAAACTTCATACTAACATCAGCCCGTTGTACAACGGATGGCAACTCTATGGCTCC 388 consensus_6076#0 GTTTGTAATGTACATGGGAAATG--AGCGCAATACCGTGGTGAAACATTACA-------- 470 consensus_6076#2 ------------------------------------------------------------ consensus_6076#1 AGATGTGGTAAGATTGGGTGATTCTGGTGAGATGCAGGAGATAAAGATCGCGGAAGCTGT 448 consensus_6076#0 --ACCATCCTGGATACCGTGAGGGACAGTATTACAACAACATTGGACTGTTGAA-----A 523 consensus_6076#2 ------------------------------------------------------------ consensus_6076#1 ACACCATCCTGAGTATAGAGAGGGCATTACGCAGCACGACATTGCACTGTTACGTTTGCA 508 consensus_6076#0 GTGAGAAGCCGCTTCCTTTTCTTTAGATCTTTCGTCCCGTTTTGTATATGGCATGAGAAT 583 consensus_6076#2 ------------------------------------------------------------ consensus_6076#1 GTCAAAAGCGGAATTGGGCTCTGCAATTGTTCCGGCTTGCCTTTGGAACAATGAAGACGT 568 consensus_6076#0 GATCTGGCAG---ATAGCATTGTTGAGCTGACCGGGCACGGGAAGGCGTGATCTTAATTA 640 consensus_6076#2 ------------------------------------------------------------ consensus_6076#1 GAAGTTTCACGCTATGACCTTGGCAGGATGGAGTGGCTCAGATGCATCAGACGTTGTTAA 628 consensus_6076#0 --CTTCAGTCTACACAATGCATCGGTGGATGTGTTTGAACCACAAAACTTCCAGTTGGTA 698 consensus_6076#2 ------------------------------------------------------------ consensus_6076#1 AGCTCAAGTCCAACCCACAC-TCGATGGTTGTGATCGTATGCTAAGTAC-------GGAT 680 consensus_6076#0 GCGCGCGCCAATGTGCTCCCCATAAATAAATGTTCTTATCCGGAAGAGTTTTCAAAGAAT 758 consensus_6076#2 ------------------------------------------------------------ consensus_6076#1 CTGTGTGTTGAAAGTACTGAATTGGGTTCATGTTTGGAC---GGTGGCTTTCTTCAGGTA 737 consensus_6076#0 CTATCGAACGGTTTGACCGAAGAGCATCTGTGCTTTGACAATGAAGCCTATCTGGTGCCT 818 consensus_6076#2 ----------CCCGAGGCTGAGAGCATCTGTGCTTTGGCA-TGAAGC-TATCTGGTGCCA 48 consensus_6076#1 CCATTGAATCAC--AATGGAAGGGTAACTCCA-TTTGTCGTTGCGATTGGTGCACCATCG 794 ** * * ** **** * ** * * consensus_6076#0 GAAACATGTCAACAAGCAGCCGGTGGACCAATCGGAGGGAAGAAGTTCAAGTTCAACAAG 878 consensus_6076#2 GAAACATGTCAACAAGCAGCCGGTGGACCAATCGGAGGGAAGAAGTTCAAGTTCAACAAG 108 consensus_6076#1 AATGTATCGTGCCAAAAATCGACT--CCCTACACAAAGGTATCGTCCTATGTTCAGTGGA 852 * ** *** * * * ** * * ** * * ***** consensus_6076#0 CAGTTCCGCTATGCGTACGCACTGAACTCATTCGGGCGCGACTGTGGCTTTGGTCGCGCT 938 consensus_6076#2 CAGTTCCGCTATGCGTACGCACTGAACTCATTTGGGTGCGACTGTGGCTTTGGTCGCGCT 168 consensus_6076#1 TTGTTTC--------TACA-ATTCAAGCTAGTGGCGAGCCAGCATGGGGTTTGT-GTACT 902 *** * *** * * ** * * * * ** * *** ** ** * ** consensus_6076#0 GCAGTTGGTGTACGCTTGTCGAGCCACATTGACTGGTTGCAATCGGTCCTGCTTCCCGAC 998 consensus_6076#2 GCAGTTGGTGTACGCTTGTCGAGCCACATTGGCTGGTTGCAATCGGTCCTGCTCCCCGAC 228 consensus_6076#1 GTA--TGATA-ATAGCTGTAAAGG-ATATTGAATGTTCTTAAACCTTTCAA-TTACAGAG 957 * * ** * * *** ** * **** ** * ** * * * * * ** consensus_6076#0 TACAGGAAAGACAGTGGATCGGTTCACTTCCTACATTCGGAGTTGGANGAGAATGATATT 1058 consensus_6076#2 TACAGGAAAGACAGTGGATCGGTTCACTTCCTACATTCGGAGTTGGAGCA-AACGATACC 287 consensus_6076#1 T---GGAAATTTAAAGAAGCCGAATGTGCTCTGCGTT--ACGTCCATCTAAGGCAGTACC 1012 * ***** * * * * * ** * ** ** * ** consensus_6076#0 TGCCGGCATGTGGACGGTGCGGAANGGCTGTGT------------------------ 1091 consensus_6076#2 TGCCGGCATGTGAACGGTGCGCCAGGGCTGTGTGTGGAGGCAACCAGATGTCCTAAG 344 consensus_6076#1 AGA-AACAAGTG--------------------------------------------- 1023 * ** *** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||