These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_609#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 744 fasta sequence [GCCGCCTGCTCCATCGAGAACCTGATGGACGACGAGTTTTGGTTGCATCTGAACGACCGACAATACTACGTTAAGCCACCGAAGCGTGAAAAAATTACCTCAGAAGAAATCACTAGACTAGGCGACGTACAGGCACTGGTGGCACAGCTGTACGAGGCACTGCACGTGGGCGAACATCAGGTGCAGAAGGAGCGCGAACTGAACGGCAAGCTGGAGCAGTTGAACGAGAAGCTCGGCCCATTGGAAGCGAAAAAGAATGAACTCGACCAGAAAGCGGCCCGCAAGACGAATGCCCTGACCTGGGTCGGGCTGGGCCTGATGTCGGTACAGTTCGGTGTGCTCGCCCGGCTAACCTGGTGGGAATACTCCTGGGACATTATGGAGCCGGTGACGTACTTCGTCACGTACGGTACGGCGATGGCCGCGTACGCTTACTTCGTGCTAACGAAGCAGGTGAGTGGTTTTGAGTGGTTTAATCCCACACACACACAAACCCATTTGACGTCTCACATCTGCGTTTACCTTGTAGGAATATCTGCTGCCGGACGTGAAAGACCGCCAGCATCTGATCACGCTGCACAAGGCGGCCAAGAAGGCGGGCGTCAATCTGGCCGAGTACAACGACATCAAGCGGCAGATCGCGGAGATCGAGCACGATCTGCGCCGGCTGCGCGACCCACTGTACATGCATCTACCGGCGCCGCCGCCAAAGACGAAAACGTTCAGCGCAAGCGAGATTGCGTT] [+] EMBL BX621397 [GCCGCCTGCTCCATCGAGAACCTGATGGACGACGAGTTTTGGTTGCATCTGAACGACCGACAATACTACGTTAAGCCACCGAAGCGTGAAAAAATTACCTCAGAAGAAATCACTAGACTAGGCGACGTACAGGCACTGGTGGCACAGCTGTACGAGGCACTGCACGTGGGCGAACATCAGGTGCAGAAGGAGCGCGAACTGAACGGCAAGCTGGAGCAGTTGAACGAGAAGCTCGGCCCATTGGAAGCGAAAAAGAATGAACTCGACCAGAAAGCGGCCCGCAAGACGAATGCCCTGACCTGGGTCGGGCTGGGCCTGATGTCGGTACAGTTCGGTGTGCTCGCCCGGCTAACCTGGTGGGAATACTCCTGGGACATTATGGAGCCGGTGACGTACTTCGTCACGTACGGTACGGCGATGGCCGCGTACGCTTACTTCGTGCTAACGAAGCAGGTGAGTGGTTTTGAGTGGTTTAATCCCACACACACACAAACCCATTTGACGTCTCACATCTGCGTTTACCTTGTAGGAATATCTGCTGCCGGACGTGAAAGACCGCCAGCATCTGATCACGCTGCACAAGGCGGCCAAGAAGGCGGGCGTCAATCTGGCCGAGTACAACGACATCAAGCGGCAGATCGCGGAGATCGAGCACGATCTGCGCCGGCTGCGCGACCCACTGTACATGCATCTACCGGCGCCGCCGCCAAAGACGAAAACGTTCAGCGCAAGCGAGATTGCGTT] consensusID : consensus_609#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 534 fasta sequence [CGAGAACCTGATGGACGACGAGTTTTGGTTGCATCTGAACGACCGACAATACTACGTTAAGCCACCGAAGCGTGAAAAAATTACCTCAGAAGAAATCACTAGACTAGGCGACGTACAGGCACTGGTGGCACAGCTGTACGAGGCACTGCACGTGGGCGAACATCAGGTGCAGAAGGAGCGCGAACTGAACGGCAAGCTGGAGCAGTTGAACGAGAAGCTCGGCCCATTGGAAGCGAAAAAGAATGAACTCGACCAGAAAGCGGCCCGCAAGACGAATGCCCTGACCTGGGTCGGGCTGGGCCTGATGTCGGTACAGTTCGGTGTGCTCGCCCGGCTAACCTGGTGGGAATACTCCTGGGACATTATGGAGCCGGTGACGTACTTCGTCACGTACGGTACGGCGATGGCCGCGTACGCTTACTTCGTGCTAACGAAGCATGAATATCTGCTGCCGGACGTGAAAGACCGCCAGCATCTGATCACGCTGCACAAGGCGGCCAAGAAGGCGGGCGTCAATCTGGCCGAGTACAACGA] [+] EMBL AGA280418 [CGAGAACCTGATGGACGACGAGTTTTGGTTGCATCTGAACGACCGACAATACTACGTTAAGCCACCGAAGCGTGAAAAAATTACCTCAGAAGAAATCACTAGACTAGGCGACGTACAGGCACTGGTGGCACAGCTGTACGAGGCACTGCACGTGGGCGAACATCAGGTGCAGAAGGAGCGCGAACTGAACGGCAAGCTGGAGCAGTTGAACGAGAAGCTCGGCCCATTGGAAGCGAAAAAGAATGAACTCGACCAGAAAGCGGCCCGCAAGACGAATGCCCTGACCTGGGTCGGGCTGGGCCTGATGTCGGTACAGTTCGGTGTGCTCGCCCGGCTAACCTGGTGGGAATACTCCTGGGACATTATGGAGCCGGTGACGTACTTCGTCACGTACGGTACGGCGATGGCCGCGTACGCTTACTTCGTGCTAACGAAGCATGAATATCTGCTGCCGGACGTGAAAGACCGCCAGCATCTGATCACGCTGCACAAGGCGGCCAAGAAGGCGGGCGTCAATCTGGCCGAGTACAACGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_609#0 GCCGCCTGCTCCATCGAGAACCTGATGGACGACGAGTTTTGGTTGCATCTGAACGACCGA 60 consensus_609#1 --------------CGAGAACCTGATGGACGACGAGTTTTGGTTGCATCTGAACGACCGA 46 ********************************************** consensus_609#0 CAATACTACGTTAAGCCACCGAAGCGTGAAAAAATTACCTCAGAAGAAATCACTAGACTA 120 consensus_609#1 CAATACTACGTTAAGCCACCGAAGCGTGAAAAAATTACCTCAGAAGAAATCACTAGACTA 106 ************************************************************ consensus_609#0 GGCGACGTACAGGCACTGGTGGCACAGCTGTACGAGGCACTGCACGTGGGCGAACATCAG 180 consensus_609#1 GGCGACGTACAGGCACTGGTGGCACAGCTGTACGAGGCACTGCACGTGGGCGAACATCAG 166 ************************************************************ consensus_609#0 GTGCAGAAGGAGCGCGAACTGAACGGCAAGCTGGAGCAGTTGAACGAGAAGCTCGGCCCA 240 consensus_609#1 GTGCAGAAGGAGCGCGAACTGAACGGCAAGCTGGAGCAGTTGAACGAGAAGCTCGGCCCA 226 ************************************************************ consensus_609#0 TTGGAAGCGAAAAAGAATGAACTCGACCAGAAAGCGGCCCGCAAGACGAATGCCCTGACC 300 consensus_609#1 TTGGAAGCGAAAAAGAATGAACTCGACCAGAAAGCGGCCCGCAAGACGAATGCCCTGACC 286 ************************************************************ consensus_609#0 TGGGTCGGGCTGGGCCTGATGTCGGTACAGTTCGGTGTGCTCGCCCGGCTAACCTGGTGG 360 consensus_609#1 TGGGTCGGGCTGGGCCTGATGTCGGTACAGTTCGGTGTGCTCGCCCGGCTAACCTGGTGG 346 ************************************************************ consensus_609#0 GAATACTCCTGGGACATTATGGAGCCGGTGACGTACTTCGTCACGTACGGTACGGCGATG 420 consensus_609#1 GAATACTCCTGGGACATTATGGAGCCGGTGACGTACTTCGTCACGTACGGTACGGCGATG 406 ************************************************************ consensus_609#0 GCCGCGTACGCTTACTTCGTGCTAACGAAGCAGGTGAGTGGTTTTGAGTGGTTTAATCCC 480 consensus_609#1 GCCGCGTACGCTTACTTCGTGCTAACGAAGCATG-------------------------- 440 ******************************** * consensus_609#0 ACACACACACAAACCCATTTGACGTCTCACATCTGCGTTTACCTTGTAGGAATATCTGCT 540 consensus_609#1 --------------------------------------------------AATATCTGCT 450 ********** consensus_609#0 GCCGGACGTGAAAGACCGCCAGCATCTGATCACGCTGCACAAGGCGGCCAAGAAGGCGGG 600 consensus_609#1 GCCGGACGTGAAAGACCGCCAGCATCTGATCACGCTGCACAAGGCGGCCAAGAAGGCGGG 510 ************************************************************ consensus_609#0 CGTCAATCTGGCCGAGTACAACGACATCAAGCGGCAGATCGCGGAGATCGAGCACGATCT 660 consensus_609#1 CGTCAATCTGGCCGAGTACAACGA------------------------------------ 534 ************************ consensus_609#0 GCGCCGGCTGCGCGACCCACTGTACATGCATCTACCGGCGCCGCCGCCAAAGACGAAAAC 720 consensus_609#1 ------------------------------------------------------------ consensus_609#0 GTTCAGCGCAAGCGAGATTGCGTT 744 consensus_609#1 ------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||