These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6095#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1199 fasta sequence [CCGCCCACGCGTCCGGTCGACGTCGGTTCGGAAGTACGCCATCGCGTCGCCCCATTGAAAAAGTGTCAGGGATTTCGCGAACAGTGCACGGTTTGCGTGAAAGGATCGTGCGTGATTCTGCTGCACCCGAGTTGCAACGTGCAGTTAAAGGTGATAACGGGGGCCATATAAATATTATGAAAAGTAAAACTATGATTTAATCAGCGTGTTGCGAGCTGCAAGATTTGACCGACGAGTGTCCCTAGTGTATTAGTAGGTATGATTTTGTGTTAACGCGTTGTCGCATAAAAGCGCCGACAAAGCGACGGAGATCGTAACAGCACGCGGGCTGAAAAGGAAATCATACAACAAGTGGCAAGTGTGTGAAAACCATTGATATATGTAGGTGTTTCCTGTGGAAAAAATACGACACGAAAAAAAAGTGTGTAACT-CGCCCAGCCCGACGCAGCATTCATTTCCTCGTCACATTCTCCTAATCGCAAGCGAGGAGATCGATACGCCGTGTCGCTCGCCCTGCGCCCTGTTGGAGTGTGTATGTGTGTATCGAAGTCAATCGAAGAAGCCTTGGGCAGCCTTAGCATCATTGTTGCATCCGTCAGCTAATGTGCGAGTCGC---TCGGTGTTGTAGTGAGGCAACCGTGCATAATCACAGCGGTGATGATAAGTCTGTTCTAACCTGATCGATCTGCATCTGCCGTTTCTTTCGATGACAGCTGTTCGCTGAAAGGTTTCGCCATCAAAGCCCGGAAAGTGTTAGACCGCGTGTACAGTGAAGACGAAACGGGAAGCGCATATCTCACTAGCGCGTATGTCGTGAACCCAACCGAAGAAAGGCCCAGTGTGAAATACTCGGTGTCAAGGCGAATCATCGACACAATAAAGATCCATCCCTCCACACGCAGCAGAGACTAGTCTTTCTGTGGCAGATTTTGTTGTGCCCAGAAAGCGAGACAAAAGCGCGAATAAGGCAGGAGAAGCAACTAGAGCGAGGGCGAGCCTCTCTAGTACTATACTACACCAGATTGATACAGAAAGGGCACAAAACTGCATCCTGCCGATCAAACCATGTCGTCTGGAACGTTCGTAGATCGAATCGATCCGTTCGCCAAACGTTCGCTCAAGAAGAAAAGCAAAAAATCTCAGGGCTCATCGCGGTACAGGAATTCACAGGATGTGGAGCTGCNACAGTTACCCCCACTC] [+] EMBL BM579601 [CCGCCCACGCGTCCGGTCGACGTCGGTTCGGAAGTACGCCATCGCGTCGCCCCATTGAAAAAGTGTCAGGGATTTCGCGAACAGTGCACGGTTTGCGTGAAAGGATCGTGCGTGATTCTGCTGCACCCGAGTTGCAACGTGCAGTTAAAGGTGATAACGGGGGCCATATAAATATTATGAAAAGTAAAACTATGATTTAATCAGCGTGTTGCGAGCTGCAAGATTTGACCGACGAGTGTCCCTAGTGTATTAGTAGGTATGATTTTGTGTTAACGCGTTGTCGCATAAAAGCGCCGACAAAGCGACGGAGATCGTAACAGCACGCGGGCTGAAAAGGAAATCATACAACAAGTGGCAAGTGTGTGAAAACCATTGATATATGTAGGTGTTTCCTGTGGAAAAAATACGACACGAAAAAAAAGTGTGTAACT CGCCCAGCCCGACGCAGCATTCATTTCCTCGTCACATTCTCCTAATCGCAAGCGAGGAGATCGATACGCCGTGTCGCTCGCCCTGCGCCCTGTTGGAGTGTGTATGTGTGTATCGAAGTCAATCGAAGAAGCCTTGGGCAGCCTTAGCATCATTGTTGCATCCGTCAGCTAATGTGCGAGTCGC TCGGTGTTGTAGTGAGGCAACCGTGC ] [+] EMBL CNS08KCP [ CCGACGAGTGT CCTAGTGTATTAGTAGGTATGATTTTGTGTTAACGCGTTGTCGCATAAAAGCGCCGACAAAGCGACGGAGATCGTAACAGCACGCGGGCTGAAAGGGAAATCATACAACAAGTGGCAAGTGTGTTAAAACCATTGATATATGTAGGTGTTTCCTGTGGAAAAAATACGACACGAAAAAAAAGTGTGTGACTGCGCCCAGCCCGACGCAGCATgtgc ] [+] EMBL BX620060 [ TGGGCAGCCTTAGCATCATTGTTGCATCCGTCAGCTAATGTGCGAGTCGCGAGTCGGTGTTGTAGTGAGGCAACCGTGCATAATCACAGCGGTGATGATAAGTCTGTTCTAACCTGATCGATCTGCATCTGCCGTTTCTTTCGATGACAGCTGTTCGCTGAAAGGTTTCGCCATCAAAGCCCGGAAAGTGTTAGACCGCGTGTACAGTGAAGACGAAACGGGAAGCGCATATCTCACTAGCGCGTATGTCGTGAACCCAACCGAAGAAAGGCCCAGTGTGAAATACTCGGTGTCAAGGCGAATCATCGACACAATAAAGATCCATCCCTCCACACGCAGCAGAGACTAGTCTTTCTGTGGCAGATTTTGTTGTGCCCAGAAAGCGAGACAAAAGCGCGAATAAGGCAGGAGAAGCAACTAGAGCGAGGGCGAGCCTCTCTAGTACTATACTACACCAGATTGATACAGAAAGGGCACAAAACTGCATCCTGCCGATCAAACCATGTCGTCTGGAACGTTCGTAGATCGAATCGATCCGTTCGCCAAACGTTCGCTCAAGAAGAAAAGCAAAAAATCTCAGGGCTCATCGCGGTACAGGAATTCACAGGATGTGGAGCTGCNACAGTTACCCCCACTC] [-] EMBL CNS08KCQ [ TGCAGACGAAACGGGAAGCGCATTTTTTAATAGCGCCTTTGTCGTGAACCCAACCGAAGAAAGGCCCAGTGTGAAATACTCGGTGTCAAGGCGAATCATCGACACAATAAAGATCCATCCCTCCACACGCAGGAGAGACTAGTCTTTTTGTGGCAGATTTTGTTGTGCCCAGAAAGCGAGACAAAAGCGCGAATAAGGCAGGAGAAGCAACTAGAGCGAGGG ] consensusID : consensus_6095#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 652 fasta sequence [GATTCTGCTGCACCCGAGTTGCAACGTGCAGTTAAAGTTGTTCGCTGAAAGGTTTCGCCATCAAAGCCCGGAAAGTGTTAGACAGCGTGTACAGTGAAGTCGAAACGGGAAGCGCATATCTCACTAGCGCGTATGTCGTGAAAGTGAACCCAACCGAAGAAAGGCCCAGTGTGTAATACTCGGTGTAGTGGCGAATCTGCTCGGGAGCTACCACATACAGAAAAGGCACTGTCTTCATCGACACAATAAAGATCCATCCCTCCACACGCAGCAGAGACCAGTCTTTCTGTGGCAGATTTTGTTGTGCCCAGAAAGCGAGACAAAAGCGCGAATAAGGCAGGAGAAGCAACTAGAGCGAGGGCGAGCCTCTCTAGTACTATACATACACCAGATTGAAACAGAAAGGGCACAAAACTGCATCCTGCCGATCAAACAATGTCGTCTGGAACGTTCGTAGATCGAATCGATCCGTTCGCCAAACGTTCGCTCAAGAAGAAAAGCAAAAAATCTCAGGGCTCATCGCGGTACAGGAATTCACAGGATGTGGAGCTGCAACAGTTACCCCCACTCAAAGTTGATTGTTCCAGCTTAGAACAGGAGGAGCTGNTCATTCGCAAGCTACGACAATGCTGCGTGTCGTTCGATTTTATGG] [+] EMBL BX626428 [GATTCTGCTGCACCCGAGTTGCAACGTGCAGTTAAAGTTGTTCGCTGAAAGGTTTCGCCATCAAAGCCCGGAAAGTGTTAGACAGCGTGTACAGTGAAGTCGAAACGGGAAGCGCATATCTCACTAGCGCGTATGTCGTGAAAGTGAACCCAACCGAAGAAAGGCCCAGTGTGTAATACTCGGTGTAGTGGCGAATCTGCTCGGGAGCTACCACATACAGAAAAGGCACTGTCTTCATCGACACAATAAAGATCCATCCCTCCACACGCAGCAGAGACCAGTCTTTCTGTGGCAGATTTTGTTGTGCCCAGAAAGCGAGACAAAAGCGCGAATAAGGCAGGAGAAGCAACTAGAGCGAGGGCGAGCCTCTCTAGTACTATACATACACCAGATTGAAACAGAAAGGGCACAAAACTGCATCCTGCCGATCAAACAATGTCGTCTGGAACGTTCGTAGATCGAATCGATCCGTTCGCCAAACGTTCGCTCAAGAAGAAAAGCAAAAAATCTCAGGGCTCATCGCGGTACAGGAATTCACAGGATGTGGAGCTGCAACAGTTACCCCCACTCAAAGTTGATTGTTCCAGCTTAGAACAGGAGGAGCTGNTCATTCGCAAGCTACGACAATGCTGCGTGTCGTTCGATTTTATGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6095#0 CCGCCCACGCGTCCGGTCGACGTCGGTTCGGAAGTACGCCATCGCGTCGCCCCATTGAAA 60 consensus_6095#1 ------------------------------------------------------------ consensus_6095#0 AAGTGTCAGGGATTTCGCGAACAGTGCACGGTTTGCGTGAAAGGATCGTGCGTGATTCTG 120 consensus_6095#1 ------------------------------------------------------------ consensus_6095#0 CTGCACCCGAGTTGCAACGTGCAGTTAAAGGTGATAACGGGGGCCATATAAATATTATGA 180 consensus_6095#1 ------------------------------------------------------------ consensus_6095#0 AAAGTAAAACTATGATTTAATCAGCGTGTTGCGAGCTGCAAGATTTGACCGACGAGTGTC 240 consensus_6095#1 ------------------------------------------------------------ consensus_6095#0 CCTAGTGTATTAGTAGGTATGATTTTGTGTTAACGCGTTGTCGCATAAAAGCGCCGACAA 300 consensus_6095#1 ------------------------------------------------------------ consensus_6095#0 AGCGACGGAGATCGTAACAGCACGCGGGCTGAAAAGGAAATCATACAACAAGTGGCAAGT 360 consensus_6095#1 ------------------------------------------------------------ consensus_6095#0 GTGTGAAAACCATTGATATATGTAGGTGTTTCCTGTGGAAAAAATACGACACGAAAAAAA 420 consensus_6095#1 ------------------------------------------------------------ consensus_6095#0 AGTGTGTAACTCGCCCAGCCCGACGCAGCATTCATTTCCTCGTCACATTCTCCTAATCGC 480 consensus_6095#1 ------------------------------------------------------------ consensus_6095#0 AAGCGAGGAGATCGATACGCCGTGTCGCTCGCCCTGCGCCCTGTTGGAGTGTGTATGTGT 540 consensus_6095#1 ------------------------------------------------------------ consensus_6095#0 GTATCGAAGTCAATCGAAGAAGCCTTGGGCAGCCTTAGCATCATTGTTGCATCCGTCAGC 600 consensus_6095#1 ------------------------------------------------------------ consensus_6095#0 TAATGTGCGAGTCGCTCGGTGTTGTAGTGAGGCAACCGTGCATAATCACAGCGGTGATGA 660 consensus_6095#1 ------------------------------------------------------------ consensus_6095#0 TAAGTCTGTTCTAACCTGATCGATCTGCATCTG--CCGTTTCTTTCGATGACAGCTGTTC 718 consensus_6095#1 -----------------GATTCTGCTGCACCCGAGTTGCAACGTGCAGTTAAAGTTGTTC 43 *** ***** * * * * * * * * ** ***** consensus_6095#0 GCTGAAAGGTTTCGCCATCAAAGCCCGGAAAGTGTTAGACCGCGTGTACAGTGAAGACGA 778 consensus_6095#1 GCTGAAAGGTTTCGCCATCAAAGCCCGGAAAGTGTTAGACAGCGTGTACAGTGAAGTCGA 103 **************************************** *************** *** consensus_6095#0 AACGGGAAGCGCATATCTCACTAGCGCGTATGTCGTGAA------CCCAACCGAAGAAAG 832 consensus_6095#1 AACGGGAAGCGCATATCTCACTAGCGCGTATGTCGTGAAAGTGAACCCAACCGAAGAAAG 163 *************************************** *************** consensus_6095#0 GCCCAGTGTGAAATACTCGGTGTCAAGGCGAATC-------------------------- 866 consensus_6095#1 GCCCAGTGTGTAATACTCGGTGTAGTGGCGAATCTGCTCGGGAGCTACCACATACAGAAA 223 ********** ************ ******** consensus_6095#0 -------------ATCGACACAATAAAGATCCATCCCTCCACACGCAGCAGAGACTAGTC 913 consensus_6095#1 AGGCACTGTCTTCATCGACACAATAAAGATCCATCCCTCCACACGCAGCAGAGACCAGTC 283 ****************************************** **** consensus_6095#0 TTTCTGTGGCAGATTTTGTTGTGCCCAGAAAGCGAGACAAAAGCGCGAATAAGGCAGGAG 973 consensus_6095#1 TTTCTGTGGCAGATTTTGTTGTGCCCAGAAAGCGAGACAAAAGCGCGAATAAGGCAGGAG 343 ************************************************************ consensus_6095#0 AAGCAACTAGAGCGAGGGCGAGCCTCTCTAGTACTATAC-TACACCAGATTGATACAGAA 1032 consensus_6095#1 AAGCAACTAGAGCGAGGGCGAGCCTCTCTAGTACTATACATACACCAGATTGAAACAGAA 403 *************************************** ************* ****** consensus_6095#0 AGGGCACAAAACTGCATCCTGCCGATCAAACCATGTCGTCTGGAACGTTCGTAGATCGAA 1092 consensus_6095#1 AGGGCACAAAACTGCATCCTGCCGATCAAACAATGTCGTCTGGAACGTTCGTAGATCGAA 463 ******************************* **************************** consensus_6095#0 TCGATCCGTTCGCCAAACGTTCGCTCAAGAAGAAAAGCAAAAAATCTCAGGGCTCATCGC 1152 consensus_6095#1 TCGATCCGTTCGCCAAACGTTCGCTCAAGAAGAAAAGCAAAAAATCTCAGGGCTCATCGC 523 ************************************************************ consensus_6095#0 GGTACAGGAATTCACAGGATGTGGAGCTGCNACAGTTACCCCCACTC------------- 1199 consensus_6095#1 GGTACAGGAATTCACAGGATGTGGAGCTGCAACAGTTACCCCCACTCAAAGTTGATTGTT 583 ****************************** **************** consensus_6095#0 ------------------------------------------------------------ consensus_6095#1 CCAGCTTAGAACAGGAGGAGCTGNTCATTCGCAAGCTACGACAATGCTGCGTGTCGTTCG 643 consensus_6095#0 --------- consensus_6095#1 ATTTTATGG 652 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||