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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6097#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 807 fasta sequence
[CCGCGCCGGATAAAGTCGTTCGCTAGCCCCTTTGTTTGAATTCGAATTTAAACACTCTACATCAAAATGGGTAAGGAGAAGACTCATATTAACATCGTCGTCATCGGACACGTCGACTCTGGCAAGTCGACCACCACCGGCCATTTGATCTACAAATGCGGCGGTATCGACAAGCGTACGATTGAGAAGTTCGAGAAGGAAGCTCAGGAGATGGGCAAGGGCTCGTTCAAGTACGCCTGGGTGCTGGACAAGCTGAAGGCCGAGCGCGAGCGTGGTATCACCATCGATATTGCGCTGTGGAAGTTCGAAACCTCCAAGTACTACGTCACCATCATCGACGCCCCCGGACATCGTGATTTCATCAAGAACATGATCACGGGAACGTCGCAGGCCGATTGTGCCGTGCTGATCGTCGCCGCCGGTACCGGCGAGTTCGAGGCCGGTATCTCGAAGAACGGACAGACCCGCGAGCACGCCCCTGCTTGCCTTCACCCTCGGCGTGAAGCAGCTGATTGTCGGCGTCAACAAGATGGGACTCGACCGAGCCGCCGTACAACGAGGCCCGCTTTCGAGGAAATCCAAGAAGGAGGGGGTCGTCGTACATCAAAGAAGAATCGGGTTTACAACCCCGGGCCGGCCGTCGCCGTTTCGTCCCCGATTCTCCGGGGCCTGGGCACGGGCGAACAACATTGGCTTGGGAACCCGGCCCCCCCAAAGAATGGCCGGGGGGTTTCCAAGGGGATGGGGGCCCATCCGAAGCGCCCAAGGGAGGGGTAAGGGCCCACCGGGTAAATGGGCCTGGATCCG]
[+] EMBL BM657652 [CCGCGCCGGATAAAGTCGTTCGCTAGCCCCTTTGTTTGAATTCGAATTTAAACACTCTACATCAAAATGGGTAAGGAGAAGACTCATATTAACATCGTCGTCATCGGACACGTCGACTCTGGCAAGTCGACCACCACCGGCCATTTGATCTACAAATGCGGCGGTATCGACAAGCGTACGATTGAGAAGTTCGAGAAGGAAGCTCAGGAGATGGGCAAGGGCTCGTTCAAGTACGCCTGGGTGCTGGACAAGCTGAAGGCCGAGCGCGAGCGTGGTATCACCATCGATATTGCGCTGTGGAAGTTCGAAACCTCCAAGTACTACGTCACCATCATCGACGCCCCCGGACATCGTGATTTCATCAAGAACATGATCACGGGAACGTCGCAGGCCGATTGTGCCGTGCTGATCGTCGCCGCCGGTACCGGCGAGTTCGAGGCCGGTATCTCGAAGAACGGACAGACCCGCGAGCACGCCCCTGCTTGCCTTCACCCTCGGCGTGAAGCAGCTGATTGTCGGCGTCAACAAGATGGGACTCGACCGAGCCGCCGTACAACGAGGCCCGCTTTCGAGGAAATCCAAGAAGGAGGGGGTCGTCGTACATCAAAGAAGAATCGGGTTTACAACCCCGGGCCGGCCGTCGCCGTTTCGTCCCCGATTCTCCGGGGCCTGGGCACGGGCGAACAACATTGGCTTGGGAACCCGGCCCCCCCAAAGAATGGCCGGGGGGTTTCCAAGGGGATGGGGGCCCATCCGAAGCGCCCAAGGGAGGGGTAAGGGCCCACCGGGTAAATGGGCCTGGATCCG]
consensusID : consensus_6097#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 704 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGTGCTACACCGGCATGCTGGTGCTCAGCTCGACCGGCTGGAACCGGTACATCGCGATCTACCAGGATATGCTCGAGCGGGAGAATGTGACGCCGGCCCAGTACCTGCACCAGGAGTCGGTGTTCCGGTCGACCGGGTTCTTCGTGATCGCCTGGCTGTGGCGCATCTTTAACGTGCACGCGCTGCTCCACTTTCTGCTGCTGAGCGTGTTCTGTGATAAGCTGTGGGAGTACCTGCGCATGATCCAGTACGCCGGGTACGTGGCGCTGCTCGTGATCATCAGCTTCGCCGAGATGCATCTGCTCGGCGTGCAGACGTTCATCTACAAGTCGCTCACGGTCAACAATACCTCGTTGTGATTGCGCTAAACATTGCGCAAAAAAGCGCCTTGCGGGCTTGTCAACGATTGTTGTTTTATTGACTCTTTTTATTTCAGTTTCATCATTTATTGTATTTTGTGTTTGTGTTCCCCATACACGTGTGTGCCCACGTGTATATGTGTGTTTATGATTATATTATACAGGCGTGCGGTGTGTAAGTGTTAGACATTTTCACCGCAAACCCCCTCCACCCTTTTCCGTCACTGAAACATTACGAAAACCACGAAATTATTATCAACAAATGCTAAAACAATAAGCAGCCCTCCCTTCCTTATTAAGCCTAAGA]
[+] EMBL BM648312 [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGTGCTACACCGGCATGCTGGTGCTCAGCTCGACCGGCTGGAACCGGTACATCGCGATCTACCAGGATATGCTCGAGCGGGAGAATGTGACGCCGGCCCAGTACCTGCACCAGGAGTCGGTGTTCCGGTCGACCGGGTTCTTCGTGATCGCCTGGCTGTGGCGCATCTTTAACGTGCACGCGCTGCTCCACTTTCTGCTGCTGAGCGTGTTCTGTGATAAGCTGTGGGAGTACCTGCGCATGATCCAGTACGCCGGGTACGTGGCGCTGCTCGTGATCATCAGCTTCGCCGAGATGCATCTGCTCGGCGTGCAGACGTTCATCTACAAGTCGCTCACGGTCAACAATACCTCGTTGTGATTGCGCTAAACATTGCGCAAAAAAGCGCCTTGCGGGCTTGTCAACGATTGTTGTTTTATTGACTCTTTTTATTTCAGTTTCATCATTTATTGTATTTTGTGTTTGTGTTCCCCATACACGTGTGTGCCCACGTGTATATGTGTGTTTATGATTATATTATACAGGCGTGCGGTGTGTAAGTGTTAGACATTTTCACCGCAAACCCCCTCCACCCTTTTCCGTCACTGAAACATTACGAAAACCACGAAATTATTATCAACAAATGCTAAAACAATAAGCAGCCCTCCCTTCCTTATTAAGCCTAAGA]
consensusID : consensus_6097#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 646 fasta sequence
[CCGCGGACGCGTGGGGCAGCAGCAGCAACACACAACCCATCGTCATCGTCATCGTCCGTCATCACGCTCTCTTGCTCTGTCGATCTATCTTCTCGTGGGGGAGATCTTGATACGCTTATCACCTGTGAAGCCGGTCTGCCACTAGCCGGTCCTAATCACGAGAGTCAGTCCGTGTTTCTTGTCGTTACCGTACCGTGTGTGTCTCGTAAACTTGTAACTGTTGCGAACAAAATGGCCATGTCGGTGCTGCGTACCTTTACCCGCAATATGGCCACCGCTGCCAAGATTAACAATGTGGTCGTCGTGGGCGGTGGGCTGATGGGTTCCGGCATCGCACAGGTTGCCGCGGCCACGGGCCACAATGTGACGCTGGTCGAGATGAACGATGCGCTCGTGGAGAAGGCGATCGGTGGCATCCGCAAAAGTCTGGAGCGGGTGGCCAAAAAGCAGTACAAGGACGATGCCGCCAAGGGCCAGCAGTTTGTCGACGGCACGTTGGCAAAGATCGGTGGCGCCACCAAGCCGGAGGTGGCCGTGGAGGGTGCGGACCTGGTCGTGGAAGCGATCGTCGAGCGGATGGACGTGAAGCACGCGCTGTTCGGCAAGCTGGACGAGGCGGCCCCCGCCCACACCATCTTTGCCAGCA]
[+] EMBL BM611716 [CCGCGGACGCGTGGGGCAGCAGCAGCAACACACAACCCATCGTCATCGTCATCGTCCGTCATCACGCTCTCTTGCTCTGTCGATCTATCTTCTCGTGGGGGAGATCTTGATACGCTTATCACCTGTGAAGCCGGTCTGCCACTAGCCGGTCCTAATCACGAGAGTCAGTCCGTGTTTCTTGTCGTTACCGTACCGTGTGTGTCTCGTAAACTTGTAACTGTTGCGAACAAAATGGCCATGTCGGTGCTGCGTACCTTTACCCGCAATATGGCCACCGCTGCCAAGATTAACAATGTGGTCGTCGTGGGCGGTGGGCTGATGGGTTCCGGCATCGCACAGGTTGCCGCGGCCACGGGCCACAATGTGACGCTGGTCGAGATGAACGATGCGCTCGTGGAGAAGGCGATCGGTGGCATCCGCAAAAGTCTGGAGCGGGTGGCCAAAAAGCAGTACAAGGACGATGCCGCCAAGGGCCAGCAGTTTGTCGACGGCACGTTGGCAAAGATCGGTGGCGCCACCAAGCCGGAGGTGGCCGTGGAGGGTGCGGACCTGGTCGTGGAAGCGATCGTCGAGCGGATGGACGTGAAGCACGCGCTGTTCGGCAAGCTGGACGAGGCGGCCCCCGCCCACACCATCTTTGCCAGCA]
consensusID : consensus_6097#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 353 fasta sequence
[GCAGATTCGGCACGATTGGGGCGTTCACCTTCCTGAAGGTGCTGAACAACATGGAGATCGGCGGCTCGCTGTTCGATGCCGAGGGTGCCAAGATCGTGCAGAACCTGGTGGACAAGGCGAAGAAGAACAATGTGCAGCTGCACCTCCCGGTTGACTTTGTGACGGGCGACAAGTTCGCGGAGGATGCGGCGACCGGCGAGGCCACGGTTGCCAGCGGCATCCCGGCCGGCCACATGGGCCTGGACATTGGGCCGAAGTCGCGCGAAGCGTTCGCGGCCCGATCGCCCGCTCCAAGATCATCGTCTGGAACGGACCGCCCGGTGTGTTCGAGTTCCCCAACTTTGCCAACGGCA]
[+] EMBL BX468434 [GCAGATTCGGCACGATTGGGGCGTTCACCTTCCTGAAGGTGCTGAACAACATGGAGATCGGCGGCTCGCTGTTCGATGCCGAGGGTGCCAAGATCGTGCAGAACCTGGTGGACAAGGCGAAGAAGAACAATGTGCAGCTGCACCTCCCGGTTGACTTTGTGACGGGCGACAAGTTCGCGGAGGATGCGGCGACCGGCGAGGCCACGGTTGCCAGCGGCATCCCGGCCGGCCACATGGGCCTGGACATTGGGCCGAAGTCGCGCGAAGCGTTCGCGGCCCGATCGCCCGCTCCAAGATCATCGTCTGGAACGGACCGCCCGGTGTGTTCGAGTTCCCCAACTTTGCCAACGGCA]
consensusID : consensus_6097#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 172 fasta sequence
[GGGGACGAGGCCGGCAGGAGAACAACCCGAAAACGGGGCCAGCCACAGAGAAAACTGACAGAGACAGACACCAGGGCCGACGAACCAGAGCGGAGCGCGACCAGCACCGAAACGGAAGGAAGCATCCGACCAGCGGACGGAAGCCGGGGAAGGGGGGCGCGAGACCACCCCA]
[+] EMBL BX616389 [GGGGACGAGGCCGGCAGGAGAACAACCCGAAAACGGGGCCAGCCACAGAGAAAACTGACAGAGACAGACACCAGGGCCGACGAACCAGAGCGGAGCGCGACCAGCACCGAAACGGAAGGAAGCATCCGACCAGCGGACGGAAGCCGGGGAAGGGGGGCGCGAGACCACCCCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6097#1 ------------------------------------------------------------
consensus_6097#4 ------------------------------------------------------------
consensus_6097#3 ------------------------------------------------------------
consensus_6097#0 CCGCGCCGGATAAAGTCGTTCGCTAGCCCCTTTGTTTGAATTCGAATTTAAACACTCTAC 60
consensus_6097#2 ------------------------------------------------------------
consensus_6097#1 -----------------------------CCGCCCACGCGTCCGCCCACGCGTCCGCCCA 31
consensus_6097#4 ------------------------------------------------------------
consensus_6097#3 -------------------------------GCAGATTCGGCACGATTGGGGCGTTCACC 29
consensus_6097#0 ATCAAAATGGGTAAGGAGAAGACTCATATTAACATCGTCGTCATCGGACACGTCGACTCT 120
consensus_6097#2 -------------CCGCGGACGCGTGGGGCAGCAGCAGCAACACACAACCCATCGTCATC 47
consensus_6097#1 CGCGTCCGGTGCTACACCGGCATGCTGGTGCTCAGCTCGACCGGCTGGAACCGGTACATC 91
consensus_6097#4 ------GGGGACGAGGCCGGCA----GGAGAACAACCCGAA-AACGGGGCCAGCCACAGA 49
consensus_6097#3 TTCCTGAAGGTGCTGAACAACATGGAGATCGGCGGCTCGCTGTTCGATGCCGAGGGTGCC 89
consensus_6097#0 GGCAAGTCGACCACCACCGGCCATTTGATCTACAAATGCGGCGGTATCGACAAGCGTACG 180
consensus_6097#2 GTCATCGTCCGTCATCACGCTCTCTTGCTCTGTCGATCTATCTTCTCGTGGGGGAGATCT 107
* *
consensus_6097#1 GCGATCTACCAG-GATATGCTCGAGCGGGAGAATGTGACGCCGGCCCAGTACCTGCACCA 150
consensus_6097#4 GAAAACTGACAGAGACAGACACCAGGGCCGACGAACCAGAGCGGAGCGCGACCAGCACCG 109
consensus_6097#3 AAGATCGTGCAGAACCTGGTGGACAAGGCGAAGAAGAACAATGTGCAGCTGCACCTCCCG 149
consensus_6097#0 ATTGAGAAGTTCGAGAAGGAAGCTCAGGAGATGGGCAAGGGCTCGTTCAAGTACGCCTGG 240
consensus_6097#2 TGATACGCTTATCACCTGTGAAGCCGGTCTGCCACTAGCCGGTCCTAATCACGAGAGTCA 167
*
consensus_6097#1 GGAGTCGGTGTTCCGGTCGACCGGGTTCTTCGTGAT-CGCCTGGCTGTGGC-GCATCTTT 208
consensus_6097#4 AAACGGAAGGAAGCATCCGACCAG-CGGACGGAAGC-CGGGGAAGGGGGGC-GCGAGACC 166
consensus_6097#3 GTTGACTTTGTGACGGGCGACAAGTTCGCGGAGGATGCGGCGACCGGCGAG-GCCACGGT 208
consensus_6097#0 GTGCTGGACAAGCTGAAGGCCGAGCGCGAGCGTGGTATCACCATCGATATT-GCGCTGTG 299
consensus_6097#2 GTCCGTGTTTCTTGTCGTTACCGTACCGTGTGTGTCTCGTAAACTTGTAACTGTTGCGAA 227
* *
consensus_6097#1 AACGTGCACGCGCTGCTCCACTTTCTGCTGCTGAGCGTGTTCTGTGATAAGCTGTGGGAG 268
consensus_6097#4 ACCCCA------------------------------------------------------ 172
consensus_6097#3 TGCCAGCGGCATCCCGGCCGGCCACATGGGCCTGGACATTGGGCCGAAGTCGCGCGAAGC 268
consensus_6097#0 GAAGTTCGAAACCTCCAAGTACTACGTCACCATCATCGACGCCCCCGGACATCGTGATTT 359
consensus_6097#2 CAAAATGGCCATGTCGGTGCTGCGTACCTTTACCCGCAATATGGCCACCGCTGCCAAGAT 287
consensus_6097#1 TACCTGCG-CATGATCCAGTACGCCGGGTACGTGGCGCTGCTCGTGATCATCAGCTTCGC 327
consensus_6097#4 ------------------------------------------------------------
consensus_6097#3 GTTCGCGG-CCCGATCGCCCGCTCCAAGATCATCGTCTGGAACGGACCGCCCGGTGTGTT 327
consensus_6097#0 CATCAAGAACATGATCACGGGAACGTCGCAGGCCGATTGTGCCGTGCTGATCGTCGCCGC 419
consensus_6097#2 TAACAATGTGGTCGTCGTGGGCGGTGGGCTGATGGGTTCCGGCATCGCACAGGTTGCCGC 347
consensus_6097#1 CGAGATGCATCTGCTCGGCGTGCAGACGTTCATCTACAAGTCGCTCACGGTCAACAATAC 387
consensus_6097#4 ------------------------------------------------------------
consensus_6097#3 CGAGTTCCCCAACTTTGCCAACGGCA---------------------------------- 353
consensus_6097#0 CGGTACCGGCGAGTTCGAGGCCGGTATCTCGAAGAACGGACAGACCCGCGAGCACGCCCC 479
consensus_6097#2 GGCCACGGGCCACAATGTGACGCTGGTCGAGATGAACGATGCGCTCGTGGAGAAGGCGAT 407
consensus_6097#1 CTCGTTGTGATTGCGCTAAACATTGCGCAAAAAAGCGCCTTGCGGGCTTGTCAACGATTG 447
consensus_6097#4 ------------------------------------------------------------
consensus_6097#3 ------------------------------------------------------------
consensus_6097#0 TGCTTGCCTTCACCCTCGGCGTGAAGCAGCTGATTGTCGGCGTCAACAAGATGGGACTCG 539
consensus_6097#2 CGGTGGCATCCGCAAAAGTCTGGAGCGGGTGGCCAAAAAGCAGTACAAGGACGATGCCGC 467
consensus_6097#1 TTGTTTTATTGACTCTTTTTATTTCAGTTTCATCATTTATTGTATTTTGTGTTTGTGTTC 507
consensus_6097#4 ------------------------------------------------------------
consensus_6097#3 ------------------------------------------------------------
consensus_6097#0 ACCGAGCCGCCGTACAACGAGGCCCGCTTTCGAGGAAATCCAAGAAGGAGGGGGTCGTCG 599
consensus_6097#2 CAAGGGCCAGCAGTTTGTCGACGGCACGTTGGCAAAGATCGGTGGCGCCACCAAGCCGGA 527
consensus_6097#1 CCCATACACGTGTGTGCCCACGTGTATATGTGTGTTTATGATTATATTATACAGGCGTGC 567
consensus_6097#4 ------------------------------------------------------------
consensus_6097#3 ------------------------------------------------------------
consensus_6097#0 TACATCAAAGAAGAATCGGGTTTACAACCCCGGGCCGGCCGTCGCCGTTTCGTCCCCGAT 659
consensus_6097#2 GGTGGCCGTGGAGGGTGCGGACCTGGTCGTGGAAGCGATCGTCGAGCGGATGGACGTGAA 587
consensus_6097#1 GGTGTGTAAGTGTTAGACATTTTCACCGCAAACCCCCTCCACCCTTTTCCGTCACTGAAA 627
consensus_6097#4 ------------------------------------------------------------
consensus_6097#3 ------------------------------------------------------------
consensus_6097#0 TCTCCGGGGCCTGGGCACGGGCGAACAACATTGGCTTGGGAACCCGGCCCCCCCAAAGAA 719
consensus_6097#2 GCACGCGCTGTTCGGCAAGCTGGACGAGGCGGCCCCCGCCCACACCATCTTTGCCAGCA- 646
consensus_6097#1 CATTACGAAAACCACGAAATTATTATCAACAAATGCTAAAACAATAAGCAGCCCTCCCTT 687
consensus_6097#4 ------------------------------------------------------------
consensus_6097#3 ------------------------------------------------------------
consensus_6097#0 TGGCCGGGGGGTTTCCAAGGGGATGGGGGCCCATCCGAAGCGCCCAAGGGAGGGGTAAGG 779
consensus_6097#2 ------------------------------------------------------------
consensus_6097#1 CCTTATTAAGCCTAAGA----------- 704
consensus_6097#4 ----------------------------
consensus_6097#3 ----------------------------
consensus_6097#0 GCCCACCGGGTAAATGGGCCTGGATCCG 807
consensus_6097#2 ----------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||