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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6098#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 986 fasta sequence
[CCGAACAAAGATTAACGACCGCATTTCACTTGCTGCCCGCGATTTCGACGATGTTTTGGGTCTGGGCGGAATGGGGGTTTAGGGAAAAACCCCGGCGACGACGACGACGACGACGGCGAAG--AATTC--CTCGATATTTGACGCCTCTTTGTGAAGGGCTCCGATTCAGTCGAACAATGGAGCACCACGCTGTTTGATGTTCCGTTGGTTTGGTTTTGCAGTGCAGTGGTGCTGACAGTGGCCCAGCCTTTCGTCGACTTTTCACAATTATGTCTAGCTGCACACTGACTCTGTGACACGGCTCGCCGTGCAAGACGGGGTAAAGAGGGCCCTCATGTTGAAGAATGATTACCCCGAAAGCGATCGACATGTGGGTTGGGGTTTTGGTTTGGCGTTGCTATGCCTATCAAACGCGGTAGCTCATTAGGGGCTGCCTTGGTGTACCATATCTACCGTGGAAGTGGCAGGAAAAACTGCTTACAATAATTACCTACCACTAGCCAGCGCTCCGCCAGACACGTGCATGCCCGCAACATCGGTCTACTATTTTCCGTGGTGTGGAATGCAATCCATAATGGCGAGTGTTGCATGTCCATGTGGCGCTCTCTTGCTGCTACTTCCACCTAGCAGGCATATTACAAAACAAGGATGTGTGCAGCTCCGACACAAATGCCTGCCTTTCCGGCTGAGGAAGTGAGCGAGCGATCCTCGCTATCATACCCCAAAGAATCGGGCGAAGACNGGGGACCTTCGGCATGTGTACGGGTGTGTTCATCAACGGCCACAGCGCTCCAAGNATCACGGCAGCAAAAGGCAACCGGGGACCCGAAGTGGACCANCCGGGGCAAACTCTTGGGGGCCAAACCGGGGGGCANTTCCCCATTGAACCGCGGAATACCCCAGAACANGCGGCAAAAGGGGGTCACAACAACGGGGGTTCCCAGGCAGAGAAACAGATCTGCNAGCCTGNGNACACGANACGCCAACAC]
[+] EMBL BM631050 [CCGAACAAAGATTAACGACCGCATTTCACTTGCTGCCCGCGATTTCGACGATGTTTTGGGTCTGGGCGGAATGGGGGTTTAGGGAAAAACCCCGGCGACGACGACGACGACGACGGCGAAGAAAATTC CTCGATATTTGACGCCTCTTTGTGAAGGGCTCCGATTCAGTCGAACAATGGAGCACCACGCTGTTTGATGTTCCGTTGGTTTGGTTTTGCAGTGCAGTGGTGCTGACAGTGGCCCAGCCTTTCGTCGACTTTTCACAATTATGTCTAGCTGCACACTGACTCTGTGACACGGCTCGCCGTGCAAGACGGGGTAAAGAGGGCCCTCATGTTGAAGAATGATTACCCCGAAAGCGATCGACATGTGGGTTGGGGTTTTGGTTTGGCGTTGCTATGCCTATCAAACGCGGTAGCTCATTAGGGGCTGCCTTGGTGTACCATATCTACCGTGGAAGTGGCAGGAAAAACTGCTTACAATAATTACCTACCACTAGCCAGCGCTCCGCCAGACACGTGCATGCCCGCAACATCGGTCTACTATTTTCCGTGGTGTGGAATGCAATCCATAATGGCGAGT ]
[+] EMBL BX467168 [ GGCCAAG AATTCGGCACGA TG GGCCTCTTTGTGAAGGGCTCCGATTCAGTCGAACAATGGAGCACCACGCTGTTTGATGTTCCGTTGGTTTGGTTTTGCAGTGCAGTGGTGCTGACAGTGGCCCAGCCTTTCGTCGACTTTTCACAATTATGTCTAGCTGCACACTGACTCTGTGACACGGCTCGCCGTGCAAGACGGGGTAAAGAGGGCCCTCATGTTGAAGAATGATTACCCCGAAAGCGATCGACATGTGGGTTGGGGTTTTGGTTTGGCGTTGCTATGCCTATCAAACGCGGTAGCTCATTAGGGGCTGCCTTGGTGTACCATATCTACCGTGGAAGTGGCAGGAAAAACTGCTTACAATAATTACCTACCACTAGCCAGCGCTCCGCCAGACACGTGCATGCCCGCAACATCGGTCTACTATTTTCCGTGGTGTGGAATGCAATCCATAATGGCGAGTGTTGCATGTCCATGTGGCGCTCTCTTGCTGCTACTTCCACCTAGCAGGCATATTACAAAACAAGGATGTGTGCAGCTCCGACACAAATGCCTGCCTTTCCGGCTGAGGAAGTGAGCGAGCGATCCTCGCTATCATACCCCAAAGAATCGGGCGAAGACNGGGGACCTTCGGCATGTGTACGGGTGTGTTCATCAACGGCCACAGCGCTCCAAGNATCACGGCAGCAAAAGGCAACCGGGGACCCGAAGTGGACCANCCGGGGCAAACTCTTGGGGGCCAAACCGGGGGGCANTTCCCCATTGAACCGCGGAATACCCCAGAACANGCGGCAAAAGGGGGTCACAACAACGGGGGTTCCCAGGCAGAGAAACAGATCTGCNAGCCTGNGNACACGANACGCCAACAC]
[+] EMBL BM638944 [ ccGCGAAA AATTC CTCGATATTTGACGCCTCTTTGTGAAGGGCTCCGATTCAGTCGAACAATGGAGCACCACGCTGTTTGATGTTCCGTTGGTTTGGTTTTGCAGTGCAGTGGTGCTGACAGTGGCCCAGCCTTTCGTCGACTTTTCACAATTATGTCTAGCTGCACACTGACTCTGTGACACGGCTCGCCGTGCAAGACGGGGTAAAGAGGGCCCTCATGTTGAAGAATGATTACCCCGAAAGCGATCGACATGTGGGTTGGGGTTTTGGTTTGGCGTTGCTATGCCTATCAAACGCGGTAGCTCATTAGGGGCTGCCTTGGTGTACCATATCTACCGTGGAAGTGGCAGGAAAAACTGCTTACAATAATTACCTACCACTAGCCAGCGCTCCGCCAGACACGTGCATGCCCGCAACATCGGTCTACTATTTTCCGTGGTGTGGAATGCAATCCATAATGGCGAGTGTTGCATGTCCATGTGGCGCTCTCTTGCT ]
consensusID : consensus_6098#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 860 fasta sequence
[CAAGAATCGGCACGAGGGCTCTTTGTGAAGGGCTCCGATTCAGTCGAACAATGGAGCACCACGCTGTTTGATGTTCCGTTGGTTTGGTTTTGCAGTGCAGTGGTGCTGACAGTGGCCCAGCCTTTCGTCGACTTTTCACAATTATGTCTAGCTGCACACTGACTCTGTGACACGGCTCGCCGTGCAAGACGGGGTAAAGAGGGCCCTCATGTTGAAGAATGATTACCCCGAAAGCGATCGACATGTGGGTTGGGGTTTTGGTTTGGCGTTGCTATGCCTATCAAACGCGGTAGCTCATTAGGGGCTGCCTTGGTGTACCATATCTACCGTGGAAGTGGCAGGAAAAACTGCTTACAATAATTACCTACCACTAGCCAGCGCTCCGCCAGACACGTGCATGCCCGCAACATCGGTCTACTATTTTCCGTTGGTGTGGAATGCAATCCATAATGGCGAGTGTTGCATGTCCATGTGGCGCTCTCTTGCTGCTACTTCCACCTAGCAGGCATATTACAAAACAAGGATGTGTGCAGCTCCGACACAAATGCCTGCCTTCCGGCTGAGGGAAGTGAGCGAGCGATCCTCGCTATCATACCCCAGGAATCGGGCCGAGCGGGACTTCGCATGTGTCGGGTGTGTATCACGCCAAGCGCTCAAGGATCAACCGGCAAGACAAAAAAGGCANACGGGGTCCCGGAAGTTTGAACAACGGGGGAAAACCTTTTAGGGTCCAACGGGGACAGTTCCCCTTTCCAGGAAATCCGGGGAACGNGNAACAGGGTCCCAAACACGGGGTATCTCGGCAAAAAAGTTAACACTTGACACAANAACCANACGCAGTGGGGGNAACAAGGGAATCC]
[+] EMBL BX467192 [CAAGAATCGGCACGAGGGCTCTTTGTGAAGGGCTCCGATTCAGTCGAACAATGGAGCACCACGCTGTTTGATGTTCCGTTGGTTTGGTTTTGCAGTGCAGTGGTGCTGACAGTGGCCCAGCCTTTCGTCGACTTTTCACAATTATGTCTAGCTGCACACTGACTCTGTGACACGGCTCGCCGTGCAAGACGGGGTAAAGAGGGCCCTCATGTTGAAGAATGATTACCCCGAAAGCGATCGACATGTGGGTTGGGGTTTTGGTTTGGCGTTGCTATGCCTATCAAACGCGGTAGCTCATTAGGGGCTGCCTTGGTGTACCATATCTACCGTGGAAGTGGCAGGAAAAACTGCTTACAATAATTACCTACCACTAGCCAGCGCTCCGCCAGACACGTGCATGCCCGCAACATCGGTCTACTATTTTCCGTTGGTGTGGAATGCAATCCATAATGGCGAGTGTTGCATGTCCATGTGGCGCTCTCTTGCTGCTACTTCCACCTAGCAGGCATATTACAAAACAAGGATGTGTGCAGCTCCGACACAAATGCCTGCCTTCCGGCTGAGGGAAGTGAGCGAGCGATCCTCGCTATCATACCCCAGGAATCGGGCCGAGCGGGACTTCGCATGTGTCGGGTGTGTATCACGCCAAGCGCTCAAGGATCAACCGGCAAGACAAAAAAGGCANACGGGGTCCCGGAAGTTTGAACAACGGGGGAAAACCTTTTAGGGTCCAACGGGGACAGTTCCCCTTTCCAGGAAATCCGGGGAACGNGNAACAGGGTCCCAAACACGGGGTATCTCGGCAAAAAAGTTAACACTTGACACAANAACCANACGCAGTGGGGGNAACAAGGGAATCC]
consensusID : consensus_6098#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 531 fasta sequence
[ACGAGGTGGGTNGGGGTTTTGGTTTGGCGTTGCTATGCCTATCAAACGCGGTAGCTCATTAGGGGCTGCCTTGGTGTACCATATCTACCGTGGAAGTGGCAGGAAAAACTGCTTACAATAATTACCTACCACTAGCCAGCGCTCCGCCAGACACGTGCATGCCCGCAACATCGGTCTACTATTTTCCGTGGTGTGGAATGCAATCCATAATGGCGAGTGTTGCATGTCCATGTGGCGCTCTCTTGCTGCTACTTCCACCTAGCAGGCATATNACAAAAACAAAGGATGTGTGCAGCTCCGACACAAATTGCCTGGCCNTTCCGGCTGANGGAAGTGAGCGAGCGATCCTCGCTATCATACCCCACGAATCGGCGAGCGGGACTTCGCATGTGTTCGGTGTGTTATCACGCCACGCGCTCAANGATCACGGCAGCAAAGCACGGTCCGAGTGACACGGAACTTTGTCACGGCATCCTTTCGTATCCGTTCGGTAAGGTCAATGGTTCGCAAAANTAAATGAAAAAACAAACA]
[+] EMBL BX619526 [ACGAGGTGGGTNGGGGTTTTGGTTTGGCGTTGCTATGCCTATCAAACGCGGTAGCTCATTAGGGGCTGCCTTGGTGTACCATATCTACCGTGGAAGTGGCAGGAAAAACTGCTTACAATAATTACCTACCACTAGCCAGCGCTCCGCCAGACACGTGCATGCCCGCAACATCGGTCTACTATTTTCCGTGGTGTGGAATGCAATCCATAATGGCGAGTGTTGCATGTCCATGTGGCGCTCTCTTGCTGCTACTTCCACCTAGCAGGCATATNACAAAAACAAAGGATGTGTGCAGCTCCGACACAAATTGCCTGGCCNTTCCGGCTGANGGAAGTGAGCGAGCGATCCTCGCTATCATACCCCACGAATCGGCGAGCGGGACTTCGCATGTGTTCGGTGTGTTATCACGCCACGCGCTCAANGATCACGGCAGCAAAGCACGGTCCGAGTGACACGGAACTTTGTCACGGCATCCTTTCGTATCCGTTCGGTAAGGTCAATGGTTCGCAAAANTAAATGAAAAAACAAACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6098#0 CCGAACAAAGATTAACGACCGCATTTCACTTGCTGCCCGCGATTTCGACGATGTTTTGGG 60
consensus_6098#1 ------------------------------------------------------------
consensus_6098#2 ------------------------------------------------------------
consensus_6098#0 TCTGGGCGGAATGGGGGTTTAGGGAAAAACCCCGGCGACGACGACGACGACGACGGCGAA 120
consensus_6098#1 ---------------------------------------------------------CAA 3
consensus_6098#2 ------------------------------------------------------------
consensus_6098#0 GAATTCCTCGATATTTGACGCCTCTTTGTGAAGGGCTCCGATTCAGTCGAACAATGGAGC 180
consensus_6098#1 GAAT----CGGCAC--GAGGGCTCTTTGTGAAGGGCTCCGATTCAGTCGAACAATGGAGC 57
consensus_6098#2 ------------------------------------------------------------
consensus_6098#0 ACCACGCTGTTTGATGTTCCGTTGGTTTGGTTTTGCAGTGCAGTGGTGCTGACAGTGGCC 240
consensus_6098#1 ACCACGCTGTTTGATGTTCCGTTGGTTTGGTTTTGCAGTGCAGTGGTGCTGACAGTGGCC 117
consensus_6098#2 ------------------------------------------------------------
consensus_6098#0 CAGCCTTTCGTCGACTTTTCACAATTATGTCTAGCTGCACACTGACTCTGTGACACGGCT 300
consensus_6098#1 CAGCCTTTCGTCGACTTTTCACAATTATGTCTAGCTGCACACTGACTCTGTGACACGGCT 177
consensus_6098#2 ------------------------------------------------------------
consensus_6098#0 CGCCGTGCAAGACGGGGTAAAGAGGGCCCTCATGTTGAAGAATGATTACCCCGAAAGCGA 360
consensus_6098#1 CGCCGTGCAAGACGGGGTAAAGAGGGCCCTCATGTTGAAGAATGATTACCCCGAAAGCGA 237
consensus_6098#2 ------------------------------------------------------------
consensus_6098#0 TCGACATGTGGGTTGGGGTTTTGGTTTGGCGTTGCTATGCCTATCAAACGCGGTAGCTCA 420
consensus_6098#1 TCGACATGTGGGTTGGGGTTTTGGTTTGGCGTTGCTATGCCTATCAAACGCGGTAGCTCA 297
consensus_6098#2 --ACGAGGTGGGTNGGGGTTTTGGTTTGGCGTTGCTATGCCTATCAAACGCGGTAGCTCA 58
* ****** **********************************************
consensus_6098#0 TTAGGGGCTGCCTTGGTGTACCATATCTACCGTGGAAGTGGCAGGAAAAACTGCTTACAA 480
consensus_6098#1 TTAGGGGCTGCCTTGGTGTACCATATCTACCGTGGAAGTGGCAGGAAAAACTGCTTACAA 357
consensus_6098#2 TTAGGGGCTGCCTTGGTGTACCATATCTACCGTGGAAGTGGCAGGAAAAACTGCTTACAA 118
************************************************************
consensus_6098#0 TAATTACCTACCACTAGCCAGCGCTCCGCCAGACACGTGCATGCCCGCAACATCGGTCTA 540
consensus_6098#1 TAATTACCTACCACTAGCCAGCGCTCCGCCAGACACGTGCATGCCCGCAACATCGGTCTA 417
consensus_6098#2 TAATTACCTACCACTAGCCAGCGCTCCGCCAGACACGTGCATGCCCGCAACATCGGTCTA 178
************************************************************
consensus_6098#0 CTATTTTCCGT-GGTGTGGAATGCAATCCATAATGGCGAGTGTTGCATGTCCATGTGGCG 599
consensus_6098#1 CTATTTTCCGTTGGTGTGGAATGCAATCCATAATGGCGAGTGTTGCATGTCCATGTGGCG 477
consensus_6098#2 CTATTTTCCGT-GGTGTGGAATGCAATCCATAATGGCGAGTGTTGCATGTCCATGTGGCG 237
*********** ************************************************
consensus_6098#0 CTCTCTTGCTGCTACTTCCACCTAGCAGGCATATTACAAAAC--AAGGATGTGTGCAGCT 657
consensus_6098#1 CTCTCTTGCTGCTACTTCCACCTAGCAGGCATATTACAAAAC--AAGGATGTGTGCAGCT 535
consensus_6098#2 CTCTCTTGCTGCTACTTCCACCTAGCAGGCATATNACAAAAACAAAGGATGTGTGCAGCT 297
********************************** ****** ****************
consensus_6098#0 CCGACACAAAT-GCCTG-CCTTTCCGGCTGAGG-AAGTGAGCGAGCGATCCTCGCTATCA 714
consensus_6098#1 CCGACACAAAT-GCCTG-CCTT-CCGGCTGAGGGAAGTGAGCGAGCGATCCTCGCTATCA 592
consensus_6098#2 CCGACACAAATTGCCTGGCCNTTCCGGCTGANGGAAGTGAGCGAGCGATCCTCGCTATCA 357
*********** ***** ** * ******** * **************************
consensus_6098#0 TACCCCAAAGAATCGGGCGAAGACNGGGGACCTTCGGCATGTGTACGGGTGTGTT-CATC 773
consensus_6098#1 TACCCCAG-GAATCGGGCCGAG---CGGGACTTC--GCATGTGT-CGGGTGTGTA-TCAC 644
consensus_6098#2 TACCCCAC-GAATCGG--CGAG---CGGGACTTC--GCATGTGT-TCGGTGTGTTATCAC 408
******* ******* ** ***** * ******** ******* *
consensus_6098#0 AACGGCCACA-GCGCTCCAAGNATCACGGCAGCAAAAGGCAACCGGGGACCCGAAG--TG 830
consensus_6098#1 GCCAAGCGCTCAAGGATCAACCGGCAAGACAA-AAAAGGCANACGGGGTCCCGGAAGTTT 703
consensus_6098#2 GCCACGCGCT-------CAANGATCACGGCAGCAAAGCACGGTCCGAGTGACA-----CG 456
* * * *** ** * ** *** * * * * *
consensus_6098#0 GACCANCCGGGGCAAACTCTTGGGGGCCAAACCGGGGGGCANTTCCCCATTGAACCGCGG 890
consensus_6098#1 GAACAACGGGGGAAAACCTTTTAGGGTCCAAC--GGGGACAGTTCCCCTTT---CCAGGA 758
consensus_6098#2 GAACTTTGTCACGGCATCCTTTCGTATCCGTTC--GGTAAGGTCAATGGTT----CGCAA 510
** * * ** * * ** * ** *
consensus_6098#0 AATACCCCAGAACANGCGGCAAAAGGGGGTCACAACAACGGGGGTTCCCAGGCAGAGAAA 950
consensus_6098#1 AAT---CCGGGGAACGNGN---AACAGGGTCCCAAACACGGGGTATCTCGGCAAAAAAGT 812
consensus_6098#2 AANTAAATGAAAAAACAAACA--------------------------------------- 531
** *
consensus_6098#0 CAG-ATCTGCNAGCCTGNGNACACGANACGCCAACAC----------- 986
consensus_6098#1 TAACACTTGACACAANAACCANACGCAGTGGGGGNAACAAGGGAATCC 860
consensus_6098#2 ------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||