These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6099#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 821 fasta sequence [TGGCTCACGCAGAATCGGGCACGNTNGGATCTGTAGGCATAGGCCGCCACGCACAAAATTTGCCCGCGCACTGCACCGCATCGTAAAGTGAACGAAGTACGCGACGACGATGGATTC-GAACAGC-AATTTTAACACCGTCGCCCTAAAATCGACAGCGTGCGCTCTGAACGCCAACAGC-ATCGTAA-CCAAAAGTGCACACGATCCAGTAAATTGTACAGACGAAATGGTGGAAACGGGCACCAAGCGCAAAGCAGACATGAGCCTAGCGAAGCAGGAAATCGGTGCCAAACGGTTCGCGCTGGGCAATCTGACCAATGCCGAAACCACGGGCACCGC-GTCGACCATCGGAGCGGTCCTGAAGAGCAAGA-TGACCAAC-TTTC-TGAGCAAGCCGA-TGA-T-GTC-GTCGAACAAA-TTGA-TCGGGGACGTCGCCAAACCAACATGGAAGCCAAACGAGCAACATTTCAAGAAAAACAAACCACCGAAGATCCATGGCGTCCCCAGGATCATGACGCGCGCCGCTATGCGTAAACAGCAAGCCGTCGATGTGAATCAAAAGACACAACAAGACAGACCCATCTCGGTCATGAAGGGCAAAGAGAATGTACCGTCGTCGTCAGACACCGTCTCCGGAAACGTTGCGGGTGTGTCAGCTCTCGCTCAAAGCCGCAAAGCGGAAGAGTTGGTTGCTAAACCGAAACCCCTTGCGACTGTTGTCACAAATCGTGCATCATGGTTGTTCAAAAGCACATGAAGGTAACGTTGATTCCTGCACTGCATTATACAAAGTAAGACCCCTTTTCATGATGAACTGACCAAGAAATAGC] [+] EMBL BX467600 [TGGCTCACGCAGAATCGGGCACGNTNGGATCTGTAGGCATAGGCCGCCACGCACAAAATTTGCCCGCGCACTGCACCGCATCGTAAAGTGAACGAAGTACGCGACGACGATGGATTCGGAACAGCGAATTTTAACACCGTCGCCCTAAAATCGACAGCGTGCGCTCTGAACGCCAACAGCGATCGTAANCCAAAAGTGCACACGATCCAGTAAATTGTACAGACGAAATGGTGGAAACGGGCACCAAGCGCAAAGCAGACATGAGCCTAGCGAAGCAGGAAATCGGTGCCAAACGGTTCGCGCTGGGCAATCTGACCAATGCCGAAACCACGGGCACCGCGGTCGACCATCGGAGCGGTCCTGAAGAGCAAGAGTGACCAACGTTTCGTGAGCAAGCCGAGTGAGTGGTCNGTCGAACAAAGTTGAGTCG ] [+] EMBL BX625293 [ AATTTGCCCGCGCAC GCACCGCATCGTAAAGTGAACGAAGTACGCGACGACGATGGCTTC GAACAGC AATTTTAACACCGTCGCCCTAAAATCGACAGCGTGCGCTCTGAACGCCAACAGC ATCGTAA CCAAAAGTGCACACGATCCAGTAAATTGTACAGACGAAATGGTGGAAACGGGCACCAAGCGCAAAGCAGACATGAGCCTAGCGAAGCAGGAAATCGGCGCCAAACGGTTCGCGCTGGGCAATCTGACCAATGCCGAAACCACGGGCACCGC GTCGACCATCGGATCGGTCCTGAAGAGCAAGA TGACCAAC TTTC TGAGCAAGCCGA TGA T GTC GTCGAACAAA TTGA TCGGGGACGTCGCCAAACCAACATGGAAGCCAAACGAGCAACATTTCAAGAAAAACAAACCACCGAAGATCCATGGCGTCCCCAGGATCATGACGCGCGCCGCTATGCGTAAACAGCAAGCCGTCGATGTGAATCAAAAGACACAACAAGACAGACCCATCTCGGTCATGAAGGGCAAAGAGAATGTACCGTCGTCGTCAGACACCGTCTCCGGAAACGTTGCGGGTGTGTCAGCTCTCGCTCAAAGCCGCAAAGCGGAAGAGTTGGTTGCTAAACCGAAACCCCTTGCGACTGTTGTCACAAATCGTGCATCATGGTTGTTCAAAAGCACATGAAGGTAACGTTGATTCCTGCACTGCATTATACAAAGTAAGACCCCTTTTCATGATGAACTGACCAAGAAATAGC] [+] EMBL AGA284624 [ AGTGAACGAAGTACGCGACGACGATGGATTC GAACAGC AATTTTAACACCGTCGCCCTAAAATCGACAGCGTGCGCTCTGAACGCCAACAGC ATCGTAA CCAAAAGTGCACACGATCCAGTAAATTGTACAGACGAAATGGTGGAAACGGGCACCAAGCGCAAAGCAGACATGAGCCTAGCGAAGCAGGAAATCGGTGCCAAACGGTTCGCGCTGGGCAATCTGACCAATGCCGAAACCACGGGCACCGC GTCGACCATCGGAGCGGTCCTGAAGAGCAAGA TGACCAAC TTTC TGAGCAAGCCGA TGA T GTC GTCGAACAAA TTGA T ] consensusID : consensus_6099#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 492 fasta sequence [AGACACCGTCTCCGGAAACGTTGCGGGTGTGTCAGCTCTCGCTCAAAGCCGCAAAGCGGAAGAGTTGGTTGCTAAACCGAAACCCCTTGCGACTGTTGTCACAAATCGTGCATCATGGAAAAATGTATTAAGAGCGCGGTCGACAACCGCAGCGGCTGAAATCGCCACAAACGACTCTGCAAGCAATGGCGAGCAGAAAAAGTCGCAGCAGGCCACAAATGCCTGCCTGGCCAAGCATGCCGAGGTGGTGGTGAAGCCGAAGCGTGGCCGAATGTCGAGCGAGTTCGAGGCAAGCGACAACTCGCTGTACGTGACAGCGGTTGATAATTTTGAGGACGGTTCAGCAGCCTCCGCCGGTACTGGGCCGGATTGTGTAGACCCGCTTGGGCCGGACTGTGTGGATCCGCTTGGGCCGGAGATTGCACCACGCAACGAACCGGCACCACCGGCGGCAAAACCACTCGCTGCCCGAGCTGATGGAAAGCCTAAGCA] [-] EMBL AGA283342 [AGACACCGTCTCCGGAAACGTTGCGGGTGTGTCAGCTCTCGCTCAAAGCCGCAAAGCGGAAGAGTTGGTTGCTAAACCGAAACCCCTTGCGACTGTTGTCACAAATCGTGCATCATGGAAAAATGTATTAAGAGCGCGGTCGACAACCGCAGCGGCTGAAATCGCCACAAACGACTCTGCAAGCAATGGCGAGCAGAAAAAGTCGCAGCAGGCCACAAATGCCTGCCTGGCCAAGCATGCCGAGGTGGTGGTGAAGCCGAAGCGTGGCCGAATGTCGAGCGAGTTCGAGGCAAGCGACAACTCGCTGTACGTGACAGCGGTTGATAATTTTGAGGACGGTTCAGCAGCCTCCGCCGGTACTGGGCCGGATTGTGTAGACCCGCTTGGGCCGGACTGTGTGGATCCGCTTGGGCCGGAGATTGCACCACGCAACGAACCGGCACCACCGGCGGCAAAACCACTCGCTGCCCGAGCTGATGGAAAGCCTAAGCA] consensusID : consensus_6099#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 483 fasta sequence [AATTACACCACTCTTCACAGAACGTGTGGCCAGGATGGCGACACGCTCGCGCACATACACACTTTAGGCTAGCTATTTTCTTGGTCAGTTCATCATGAAAGGGGTCTTACTTTGTATAATGCAGTGCAGGAATCAACGTTACCTTCATGTGCTTTTGAACAACCATGAATGTGGTACATCATATAATATTACTCGCGGTGGCGCGGTGGCCCCGGTTTGCACCTTAATCTCATTTGTTACTGACGGCGGCCGGAATGGGGGCGACATTTTCTTTGGTCGTTGCGTCGGCTGCAACTGGTAAGGCGGTGGGAGCCGCTTTGTACATTACGCTTGAGGTGGCGAACAATTTCTCCATACTGGTGATGACGGGGCGTTTGGCCACCTCGAAGAACAGCTCGTGCGAGTATTTCTTGTGCACCGTGTCGAACGAATATTGCCTCGAGCTCATGCCGTTGTTTAGCAGCACGATCGCATCCGTAAATT] [+] EMBL AGA282404 [AATTACACCACTCTTCACAGAACGTGTGGCCAGGATGGCGACACGCTCGCGCACATACACACTTTAGGCTAGCTATTTTCTTGGTCAGTTCATCATGAAAGGGGTCTTACTTTGTATAATGCAGTGCAGGAATCAACGTTACCTTCATGTGCTTTTGAACAACCATGAATGTGGTACATCATATAATATTACTCGCGGTGGCGCGGTGGCCCCGGTTTGCACCTTAATCTCATTTGTTACTGACGGCGGCCGGAATGGGGGCGACATTTTCTTTGGTCGTTGCGTCGGCTGCAACTGGTAAGGCGGTGGGAGCCGCTTTGTACATTACGCTTGAGGTGGCGAACAATTTCTCCATACTGGTGATGACGGGGCGTTTGGCCACCTCGAAGAACAGCTCGTGCGAGTATTTCTTGTGCACCGTGTCGAACGAATATTGCCTCGAGCTCATGCCGTTGTTTAGCAGCACGATCGCATCCGTAAATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6099#0 TGGCTCACGCAGAATCGGGCACGNTNGGATCTGTAGGCATAGGCCGCCACGCACAAAATT 60 consensus_6099#1 ------------------------------------------------------------ consensus_6099#2 ------------------------------------------------------------ consensus_6099#0 TGCCCGCGCACTGCACCGCATCGTAAAGTGAACGAAGTACGCGACGACGATGGATTCGAA 120 consensus_6099#1 ------------------------------------------------------------ consensus_6099#2 ------------------------------------------------------------ consensus_6099#0 CAGCAATTTTAACACCGTCGCCCTAAAATCGACAGCGTGCGCTCTGAACGCCAACAGCAT 180 consensus_6099#1 -----------------------------AGACACCGT-CTCCGGAAACGTTGCGGGTGT 30 consensus_6099#2 ---------------------------AATTACACCACTCTTCACAGAACGTGTGGCCAG 33 *** * * * consensus_6099#0 CGTAACCAAAAGTGCACACGATCCAGTAAATTGTACAGACGAAATGGTGGAAACGGGCAC 240 consensus_6099#1 GTCAGCT-----CTCGCTCAAAGCCGCAAAGCGGAAGAGTTGGTTGCTAAACCGAAACCC 85 consensus_6099#2 GATGGCGACACGCTCGCGCACATACACACTTTAGGCTAGCTATTTTCTTGGTCAGTTCAT 93 * * * * * * * * consensus_6099#0 CAAGCGCAAAGCAGACATGAGCCTAGCGAAGCAGGAAATCGGTGCCAAACGGTTCGCGCT 300 consensus_6099#1 CTTGCG-ACTGTTGTCACAAATCGTGCATCATGGAAAAATG-TATTAAGAG---CGCGGT 140 consensus_6099#2 CATG---AAAGGGGTCTT--ACTTTGTATAATGCAGTGCAGGAATCAACGTTACCTTCAT 148 * * * * * * * * ** * * consensus_6099#0 GGGCAATCTGACCAATGCCGAAACCACGGGCACCGCGTCGACCATCGGAGCGGTCCTGAA 360 consensus_6099#1 CGACAACCGCAGCG--GCTGAAATCGC---CACAAA--CGACTCTGCAAGCAATGGCGAG 193 consensus_6099#2 GTGCTTTTGAACAACCATGAATGTGGTA--CATCATA-TAATATTACTCGCGGTGGCGCG 205 * * * ** * * ** * * consensus_6099#0 GAGCAAGATGACCAACTTTCTGAGCAAGCCGATGATGTCGTC--GAACAAATTGATCGGG 418 consensus_6099#1 CAGAAAAAG---------TCGCAGCAGGCCACAAATGCCTGCCTGGCCAAGCATGCCGAG 244 consensus_6099#2 GTGG--------------CCCCGGTTTGCACCTTAATCTCATTTGTT---ACTGACGGCG 248 * * * ** * * * * consensus_6099#0 GACGTCGCCAAACCAACATGGAAGCCAAACGAGCAAC-ATTTCAAGAAAAACAAACCACC 477 consensus_6099#1 GTGGTGGTGAAGCCGA-AGCGTGGCCGAATGTCGAGCGAGTTCGAGGCAAGCGA-CAACT 302 consensus_6099#2 GCCGGAATGGGGGCGACATTTTCTTTGGTCGTTGCGTCGGCTGCAACTGGTAAGGCGGTG 308 * * * * * * * * * consensus_6099#0 GAAGATCCATGGCGTCCCCAGGATCATGACGCGCGCCGCTATGCGTAAACAGCAAGCCGT 537 consensus_6099#1 CGCTGTACGTGACAGCGGTTG-ATAATTTTGAGGACGGTTCAGCAGCCTCCGCCGGTACT 361 consensus_6099#2 GGAGCCGCTTTGTACATTACGCTTGAGGTGGCGAACAATTTCTC----CATACTGGTGAT 364 * * * * * * * * * * * * * consensus_6099#0 CGATGTGAATCAAAAGACACAACAAGACAGACCCATCTCGGT---CATGAAGGGCAAAGA 594 consensus_6099#1 GGGCCGGATTGTGTAGACCCGCTTGGGCCGGACTGTGTGGAT---CCGCTTGGGCCG-GA 417 consensus_6099#2 GACGGGGCGTTTGGCCACCT-CGAAGAACAGCTCGTGCGAGTATTTCTTGTGCACCGTGT 423 * * ** * * * * * * consensus_6099#0 -GAATGTACC--GTCGTCGTCAGACACCGTCTCCGGAAACGTTGCGGGTGTGTCAGCTCT 651 consensus_6099#1 -GATTGCACCACGCAACGAACCGGCACCACCGGCGGCAAAACCACTCGC-TGCCCGAGCT 475 consensus_6099#2 CGAACGAATATTGCCTCGAGCTCATGCCGTTGTTTAGCAGCACGATCGCATCCGTAAATT 483 ** * * * * ** * * * * consensus_6099#0 CGCTCAAAGCCGCAAAGCGGAAGAGTTGGTTGCTAAACCGAAACCCCTTGCGACTGTTGT 711 consensus_6099#1 GATGGAAAGCC--TAAGCA----------------------------------------- 492 consensus_6099#2 ------------------------------------------------------------ consensus_6099#0 CACAAATCGTGCATCATGGTTGTTCAAAAGCACATGAAGGTAACGTTGATTCCTGCACTG 771 consensus_6099#1 ------------------------------------------------------------ consensus_6099#2 ------------------------------------------------------------ consensus_6099#0 CATTATACAAAGTAAGACCCCTTTTCATGATGAACTGACCAAGAAATAGC 821 consensus_6099#1 -------------------------------------------------- consensus_6099#2 -------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||