These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6107#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1116 fasta sequence [AGATCGCCCCAGGATTAAATCAATGCAAAACACGCTAAAAAGACGTAAGGGACTATAACCTGTTTCTGAAAACAGTGACAGCACGATAAGGGATAGGGCCAAAGGAAGCNNAAGGCTAAGTGTAAGGAAGCNAATAGAATTAGAACGACGGTATAAGTTCGTTACATGTTTTTGCACCACGAGAGCAATTGTTATTGGCGGGCTATTATATTTCTCTATATATTCTGTGTTACATTAATATTGTTTCGGTATCAATATCTTTGAGCGGGCCGTCACTAATACCTCAATCCCTATTGGGAACAGGTTTGCAACCACCCGGAAAACAGCAAACAAAAAACACCGCGCCTCAACAAACCAACCCAATGGTTATGGAGGGGTAACGGGGTCCTNTCACTTNNAACTTAGGGTACACTGCCACTTCTANGACCACTTTCTACGTAATTNCGGTAGTACATATTGGTACCACACGGAAACACGCACAACAACACTTGGTGNTCCCCTTCTTNANTAANATTCCTTAAACGGTAACCCACGGAAAGGCACTTTCTCACCANNCCTTCTNCTCTGGTACAAGGCCACCTTTAACCCGACACGCCGCANAGCACTANTTTTGNACCCACGGGCCAAACGAAACGCANTTAAGGCCCNCACACACCCGCCCAATCCGGGGCACGAACTTGGCTTAACCACCCCACACTCCGCACCCACTTGCAGCACACACNGGACAACGAAACANCCACACCACACGGCACNCACACAGTAATTGAAAACCCGGCCCCCACCGCGTTAGAACCAATTAATTTANTTCCAAAGCACANCACAANTTTTACACCCNACTATCTTCCCAAACCCCTTACCCGTTCAACTCTCATCACAANCCCCCCGGNACTCCCACAAACCAAACCCTTANCCAAAACCCCACGAACCCCCCAAAACACCAACGNNGCCAAATCTCGCCTCAACCTCTCNACACTTCGCAACCNCCCTCTCCTTACCCCCACACCNTCATCACNCATACCTCACTCACTTTNTTNCCCNCANNCTCCCTCTACACCACCACACACNACNATTACGCNCCGTCTCCCAACNCCACCCCAACTCTTCGTCATCCNCACC] [+] EMBL AL695883 [AGATCGCCCCAGGATTAAATCAATGCAAAACACGCTAAAAAGACGTAAGGGACTATAACCTGTTTCTGAAAACAGTGACAGCACGATAAGGGATAGGGCCAAAGGAAGCNNAAGGCTAAGTGTAAGGAAGCNAATAGAATTAGAACGACGGTATAAGTTCGTTACATGTTTTTGCACCACGAGAGCAATTGTTATTGGCGGGCTATTATATTTCTCTATATATTCTGTGTTACATTAATATTGTTTCGGTATCAATATCTTTGAGCGGGCCGTCACTAATACCTCAATCCCTATTGGGAACAGGTTTGCAACCACCCGGAAAACAGCAAACAAAAAACACCGCGCCTCAACAAACCAACCCAATGGTTATGGAGGGGTAACGGGGTCCTNTCACTTNNAACTTAGGGTACACTGCCACTTCTANGACCACTTTCTACGTAATTNCGGTAGTACATATTGGTACCACACGGAAACACGCACAACAACACTTGGTGNTCCCCTTCTTNANTAANATTCCTTAAACGGTAACCCACGGAAAGGCACTTTCTCACCANNCCTTCTNCTCTGGTACAAGGCCACCTTTAACCCGACACGCCGCANAGCACTANTTTTGNACCCACGGGCCAAACGAAACGCANTTAAGGCCCNCACACACCCGCCCAATCCGGGGCACGAACTTGGCTTAACCACCCCACACTCCGCACCCACTTGCAGCACACACNGGACAACGAAACANCCACACCACACGGCACNCACACAGTAATTGAAAACCCGGCCCCCACCGCGTTAGAACCAATTAATTTANTTCCAAAGCACANCACAANTTTTACACCCNACTATCTTCCCAAACCCCTTACCCGTTCAACTCTCATCACAANCCCCCCGGNACTCCCACAAACCAAACCCTTANCCAAAACCCCACGAACCCCCCAAAACACCAACGNNGCCAAATCTCGCCTCAACCTCTCNACACTTCGCAACCNCCCTCTCCTTACCCCCACACCNTCATCACNCATACCTCACTCACTTTNTTNCCCNCANNCTCCCTCTACACCACCACACACNACNATTACGCNCCGTCTCCCAACNCCACCCCAACTCTTCGTCATCCNCACC] consensusID : consensus_6107#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1006 fasta sequence [CCGGTTTTAAGAGTGAGTCATACTGTGTACAGTCGAGCAGAAGTGTTGGTGGATTTGTTTGATTGCAAAAAGAAAAAGACTACTACGCGTATACTACCGATGTACTATTCATTGCGCGAAATGTTTGTAACAGCAGCTAACACGCACAGCTCTTCTAATTCATCAAACGTGAACGTGCGTGACATGCTGACCTATGTTTACGCAGAGAAGGAAGTAAGGTGCAACAGTAGTGCCTAGCAGCTTCTACATTCAAACGTTGCTAGGGACCATACTATGGTGTGATACANAGTGAATCTGCCTTATACTGGGTANGTGGANGCAAACACAACCAACACAAGAAAACATCACGGAAACAANACCAAAGAAAATGAATAAAATCAGTCTAAATCGTATTACATACTTACTAGNCTGTATGANAAACACACCTCTTCCGTAATAATTATTATTCTTGCGGAAACCTGGTTCTTAAAGGCCCCAAAAGAAATTACTTACACGCACAGGAAGATACTAACAGACAACAGCATTTNANCACACAGTNCAANGTNAACCCNTTCCCAAGTTGGCNGACAAACACAACACCGGCCTAAACCACAGGAACGGTTANCACAGGGGCGACCCTAACTAAACCCCTGGGCTGATTCCCTGGNACACACCCCAGTNGACACAGCACAGCACGACAACNNGGGANACTAACGGGGGACCTCACAAGGGCAAACGCGCCACCAACAGNGGGCCATAAAAGAANAGGCNGGNCACNCAGCGGACAANGNCCNCAACANGACACCTCAAGCAAACCCCGGCACCACGGCCCNTNCACAGCGACNCCCCGGCCACNANCNATGGACACCTCAACGGNCCACCCCNACCGACCNCANACGCCNNCNCCTGCNCCCCACCGCGCNNGGCGNACCAANNCCACAGCAGACACCCCAAACACATCACCGGCGGGCGACNCCAACTCCAACACAATGCGTAACCGCGGGACGCACCACACCCCCNCCCTGCN] [+] EMBL AL693395 [CCGGTTTTAAGAGTGAGTCATACTGTGTACAGTCGAGCAGAAGTGTTGGTGGATTTGTTTGATTGCAAAAAGAAAAAGACTACTACGCGTATACTACCGATGTACTATTCATTGCGCGAAATGTTTGTAACAGCAGCTAACACGCACAGCTCTTCTAATTCATCAAACGTGAACGTGCGTGACATGCTGACCTATGTTTACGCAGAGAAGGAAGTAAGGTGCAACAGTAGTGCCTAGCAGCTTCTACATTCAAACGTTGCTAGGGACCATACTATGGTGTGATACANAGTGAATCTGCCTTATACTGGGTANGTGGANGCAAACACAACCAACACAAGAAAACATCACGGAAACAANACCAAAGAAAATGAATAAAATCAGTCTAAATCGTATTACATACTTACTAGNCTGTATGANAAACACACCTCTTCCGTAATAATTATTATTCTTGCGGAAACCTGGTTCTTAAAGGCCCCAAAAGAAATTACTTACACGCACAGGAAGATACTAACAGACAACAGCATTTNANCACACAGTNCAANGTNAACCCNTTCCCAAGTTGGCNGACAAACACAACACCGGCCTAAACCACAGGAACGGTTANCACAGGGGCGACCCTAACTAAACCCCTGGGCTGATTCCCTGGNACACACCCCAGTNGACACAGCACAGCACGACAACNNGGGANACTAACGGGGGACCTCACAAGGGCAAACGCGCCACCAACAGNGGGCCATAAAAGAANAGGCNGGNCACNCAGCGGACAANGNCCNCAACANGACACCTCAAGCAAACCCCGGCACCACGGCCCNTNCACAGCGACNCCCCGGCCACNANCNATGGACACCTCAACGGNCCACCCCNACCGACCNCANACGCCNNCNCCTGCNCCCCACCGCGCNNGGCGNACCAANNCCACAGCAGACACCCCAAACACATCACCGGCGGGCGACNCCAACTCCAACACAATGCGTAACCGCGGGACGCACCACACCCCCNCCCTGCN] consensusID : consensus_6107#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 752 fasta sequence [TACAGTTTGGCTTATTATAAAAATATCCATTTTGGCTTACCTTAAATAAAANACTGGAAAGATAAATTTTAGTTTGACATACATGTACAACCATCAGAGTGAATCGGTGTATAGGAACAAGAACCATGCAACATGCCACAACACA----ACAGACAGACACCACNACCTCAGTATAATTTCGATTGAACTTTGGCACCGATAGTGTACTAANAGTGAGTCATACTGT-----GTTCGAGCAGAAGTGTTTGGNGGATTTTGTTTGATTGCAAAAAAGAAAAANCTACTACGCGTNATACTACCAATGTNACTATTCATTGCG-CGAAATGTTTGTAACAGCAGCTAACACGCACAGCTCTTCTAATTCATCAAACGTGAACGGCGGAAAGTGAATATGTTTACGCAGAGAAGGAAGTAAGGNGCAACAGTAGGCCTAGCAGCTTCTACATTC-AACGTTGCTAGGGACATACTATGGNGTGATACAAGTGAATCTGCTTATCTGGGTTGTGGAGTAAAAAACAAAAAAAAAAAATCAAGAAACAAACAAGAAATGAATAAATCAGTCTAATCGTTTACTACTTCTAGCTGTTTGAACAACTCTTCCGTATAATATATTCTTGCGAACTGTTTAAGCCAAAAATTATAAGAAGAAGAAAAAAAAGATTACAAATAATTAAAATCAATGCAAAAACACGCTAAAAGACGTAAAGGGACTATAACCTGTTTCTGAAAACAGTGACAGCACGATAAGGGATAGGGCA] [+] EMBL BX621187 [TACAGTTTGGCTTATTATAAAAATATCCATTTTGGCTTACCTTAAATAAAANACTGGAAAGATAAATTTTAGTTTGACATACATGTACAACCATCAGAGTGAATCGGTGTATAGGAACAAGAACCATGCAACATGCCACAACACA ACAGACAGACACCACNACCTCAGTATAATTTCGATTGAACTTTGGCACCGATAGTGTACTAANAGTGAGTCATACTGT GTTCGAGCAGAAGTGTTTGGNGGATTTTGTTTGATTGCAAAAAAGAAAAANCTACTACGCGTNATACTACCAATGTNACTATTCATTGCGCCGAA ] [+] EMBL BX621462 [ AGTTTGGCTTATTATAAAAATATCCATTTTGGCTTACCTTAAATAAAAGACTGGAAAGATAAATTTTAGTTTGACATACATGTACAACCATCAGAGTGAATCGGTGTATAGGAACAACAACCATGCAACATGCCACAACACAACAGACAGACAGACACCACAACCTCAGTATAATTTCGATTGAACTTTGGCACCGATAGTGTACTAAGAGTGAGTCATACTGTGTACAGTTCGAGCAGAAGTG TTGGTGGA TTTGTTTGATTGC AAAAAGAAAAAGCTACTACGCGT ATACTACCGATGT ACTATTCATTGCG CGAAATGTTTGTAACAGCAGCTAACACGCACAGCTCTTCTAATTCATCAAACGTGAACGGCGGAAAGTGAATATGTTTACGCAGAGAAGGAAGTAAGGNGCAACAGTAGGCCTAGCAGCTTCTACATTC AACGTTGCTAGGGACATACTATGGNGTGATACAAGTG ] [+] EMBL BX612718 [ tACTATTCATTGCG CGAAATGTTTGTAACAGCAGCTAACACGCACAGCTCTTCTAATTCATCAAACGTGAACGGCGGAAAGTGAATATGTTTACGCAGAGAAGGAAGTAAGGTGCAACAGTAGGCCTAGCAGCTTCTACATTCAAACGTTGCTAGGGACATACTAAGGTGTGATACAAGTGAATCTGCTTATCTGGGTTGTGGAGTAAAAAACAAAAAAAAAAAATCAAGAAACAAACAAGAAATGAATAAATCAGTCTAATCGTTTACTACTTCTAGCTGTTTGAACAACTCTTCCGTATAATATATTCTTGCGAACTGTTTAAGCCAAAAATTATAAGAAGAAGAAAAAAAAGATTACAAATAATTAAAATCAATGCAAAAACACGCTAAAAGACGTAAAGGGACTATAACCTGTTTCTGAAAACAGTGACAGCACGATAAGGGATAGGGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6107#1 ------------------------------------------------------------ consensus_6107#2 TACAGTTTGGCTTATTATAAAAATATCCATTTTGGCTTACCTTAAATAAAANACTGGAAA 60 consensus_6107#0 -----------------------------------------------AGATCGCCCCAGG 13 consensus_6107#1 ------------------------------------------------------------ consensus_6107#2 GATAAATTTTAGTTTGACATACATGTACAACCATCAGAGTGAATCGGTGTATAGGAACAA 120 consensus_6107#0 ATTAAATCAATGCAAAACACGC-TAAAAAGACGTAAGGGACTATAACCTGTTTCTGAAAA 72 consensus_6107#1 ------------------------------------------------------------ consensus_6107#2 GAACCATGCAACATGCCACAACACAACAGACAGACACCACNACCTCAGTATAATTTCGAT 180 consensus_6107#0 CAGTGACAGCACGATAAGGGATAGGGCCAAAGGAAGCNNAAGGCTAAGTGTAAGGAAGCN 132 consensus_6107#1 -----------------CCGGTTTTAAGAGTGAGTCATACTGTGTACAGTCGAGCAGAAG 43 consensus_6107#2 TGAACTTTGGCACCGATAGTGTACTAANAGTGAGTCATACTGTGT----TCGAGCAGAAG 236 consensus_6107#0 AATAGAATTAGAACGACGGTATAAGTTCGTTACATGTTTTTGCAC-CACGAGAGCAATTG 191 * * * * ** ***** * consensus_6107#1 TGTT-GGTGGATTT-GTTTGATTGCAAAAAGAAAAAGACTACTACGCGTA-TACTACCGA 100 consensus_6107#2 TGTTTGGNGGATTTTGTTTGATTGCAAAAAAGAAAAANCTACTACGCGTNATACTACCAA 296 consensus_6107#0 TTATTGGCGGGCT--ATTATATTTCTCTATATATTCTG-TGTTACAT-TAATATTGTTTC 247 * * ** ** * ** *** * * * * *** * ** * consensus_6107#1 TGTA-CTAT-TCATTGCGCGAAATGTTTGTAA-----CAGCAGCTAACACGCACAGCTCT 153 consensus_6107#2 TGTNACTAT-TCATTGCGCGAAATGTTTGTAA-----CAGCAGCTAACACGCACAGCTCT 350 consensus_6107#0 GGTATCAATATCTTTGAGCGGGCCGTCACTAATACCTCAATCCCTATTGGGAACAGGT-T 306 ** * ** ** *** *** ** *** ** *** * **** * * consensus_6107#1 TCTAATTCATCAAACGTGAACGTGCGTGACATGCTGACCTATGTTTACGCAGAGAAGGAA 213 consensus_6107#2 TCTAATTCATCAAACGTGAACG-GCGGAAAGTGAA----TATGTTTACGCAGAGAAGGAA 405 consensus_6107#0 TGCAACCACCCGGAAAACAGCAAACAAAAAACACCGCGCCTCAACAAACCAACCCAATGG 366 * ** * * * * * * * ** * consensus_6107#1 GTAAGGTGCAACAGTAGTGCCTAGCAGCTTCTACATTCAAACGTTGCTAGGGACCATACT 273 consensus_6107#2 GTAAGGNGCAACAGTAG-GCCTAGCAGCTTCTACATTCAA-CGTTGCTAGGGAC-ATACT 462 consensus_6107#0 TTATGGAGGGGTAACGGGGTCCTNTCACTTNNA-ACTTAGGGTACACTGCCACTTCTANG 425 ** ** * * * * * *** * * * * ** ** consensus_6107#1 ATGGTGTGATACANAGTGAATCTGCCTTATACTGGG--TANGTGGANGCAAACACAACCA 331 consensus_6107#2 ATGGNGTGATACAA-GTGAATCTGC-TTAT-CTGGG--T-TGTGGAGTAAAAAACAAA-- 514 consensus_6107#0 ACCACTTTCTACGTAATTNCGGTAGTACATATTGGTACCACACGGAAACACGCACAACAA 485 * * *** * * ** *** *** * **** consensus_6107#1 ACACAAGAAAACATCACGGAAACAANACCAAAGAAAATGAATAAAATCAGTCTAAATCGT 391 consensus_6107#2 ----AAAAAAAAATCA-AGAAACAAAC----AAGAAATGAATAAA-TCAGTCTAA-TCGT 563 consensus_6107#0 CACTTGGTGNTCCCCTTCTTNANTAANATTCCTTAAACGGT--AACCCACGGAAAGGCAC 543 * * * *** * ** ** ** * consensus_6107#1 ATTACATACTTACTAGNCTGTATGANAAACACACCTCTTCCGTAATAATTATTATTCTTG 451 consensus_6107#2 -TTAC-TACTT-CTAGC-TGTTTGAACAAC-----TCTTCCGTA-TAATA--TATTCTTG 611 consensus_6107#0 -TTTCTCACCANNCCTTCTNCTCTGGTACAAGGCCACCTTTAACCCGACACGCCGCANAG 602 ** * ** * * * * * * consensus_6107#1 CGGAAACCTGGTTCTTAAAGGCCCCAAAAGAAATTACTTACACGCACAGGAA---GAT-- 506 consensus_6107#2 CGAACTGTTTAAGCCAAAAATTATAAGAAGAAGAAAAAAAAGATTACAAATA---ATTAA 668 consensus_6107#0 CACTANTTTTGNACCCACGGGCCAAACGAAACGCANTTAAGGCCCNCACACACCCGCCCA 662 * * * * * * * * ** * consensus_6107#1 -ACTAACAGACAACAGCA-TTTNANCACACAGTNCAANGTNAACCCNTTCCCAAGTTGGC 564 consensus_6107#2 AATCAATGCAAAAACACG-CTAAAAGACGTAAAGGGACTATAACCTGTTTCTGAAAACAG 727 consensus_6107#0 ATCCGGGGCACGAACTTGGCTTAACCACCCCACACT-CCGCACCCACTTGCAGCACACAC 721 * * * * ** * ** ** * consensus_6107#1 NGACAAACACAACACCGGCC---TAAACCACAGGAACGGTTANCACAGGGGCGACCCTAA 621 consensus_6107#2 TGACAG-CACGATAAGGGA----TAGGGCA------------------------------ 752 consensus_6107#0 NGGACAACGAAACANCCACACCACACGGCACNCACACAGTAATTGAAAACCCGGCCCCCA 781 * * * * * ** consensus_6107#1 CTAAACCCCTGGGCTGATTCCCTGGNACACACCCCAGTNGACACAGCACAGCACGACAAC 681 consensus_6107#2 ------------------------------------------------------------ consensus_6107#0 CCGCGTTAGAACCAATTAATTTANTTCCAAAGCACANCACAANTTTTACACCCNACTATC 841 consensus_6107#1 NNGGGANACTAACGGGGGACCTCACAAGGGCAAACGCGCCACCAACAGNGGGCCATAAAA 741 consensus_6107#2 ------------------------------------------------------------ consensus_6107#0 TTCCCAAAC---CCCTTACCCGTTCAACTCTCATCACAANCCCCCCGGNACTCCCACAAA 898 consensus_6107#1 GAANAGGCNGGNCACNCAGCGGACAANGNCCNCAACANGACACCTCAAGCAAACCCCGGC 801 consensus_6107#2 ------------------------------------------------------------ consensus_6107#0 CCAAACCCTTANCCAAAACCCCACGAACCCCCCAAAACACCAACGNNGCCAAATCTCGCC 958 consensus_6107#1 ACCACGGCCCNTNCACAGCGACNCCCCGGCCACNANCNATGGACACCTCAACGGNCCACC 861 consensus_6107#2 ------------------------------------------------------------ consensus_6107#0 TCAACC-TCTCNACACTTCGCAACCNCCCTCTCCTTACCCCCACACCNTCATCACNCATA 1017 consensus_6107#1 CCNACCGACCNCANACGCCNNCNCCTGCNCCCCACCGCGCNNGGCGNACCAANNCCACAG 921 consensus_6107#2 ------------------------------------------------------------ consensus_6107#0 CCTCACTCACTTTNTTNCCCNCANNCTCCCTCTACACCACCACACACNACNATTACGCNC 1077 consensus_6107#1 CAGACACCCCAAACACATCACCGGCGGGCGACNCCAACTCCAACACAATGCGTAACCGCG 981 consensus_6107#2 ------------------------------------------------------------ consensus_6107#0 CGTCTCCCAACNCCACCCCAACTCTTCGTCATCCNCACC--------------------- 1116 consensus_6107#1 GGACGCACCACACCCCCNCCCTGCN 1006 consensus_6107#2 ------------------------- consensus_6107#0 ------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||