These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6108#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 649 fasta sequence [CCGCTGAGCAGCGAGCAACGAGGTCGCACTGGACGTTGTTTTGTTTGGGCCTTCCGTGGGCGAAAGAAATTAGCCGGATATTTTCATAATTAAAGGCCGCCGCGATGGACGTACTCTCGAGACCGGCGGAAGAATTCGTCAACGATGGCACGGTGGAGGAGCTGTGGGCTGTGAAGGCGGTCGACCATGCCGAGGTACACTTCAATCTCCTGTGCAGTGTCGATCCGCGCCTGCTACGACTGACTCCGTACGATGACGAGATCTACGAGCAGTTCCGGCGGATGTTCCCCGACATGGACGTGCGGGTGGTGAACGAAAGCGAGCTGAAAAGCTC-GGACGGCAAAACGAAATGGAGAGCGTACATGGAGAAGTTCAACCGGTTGGAAGATTTCAGCTACGGCACGCTGCTGCGCTCGGACGCGGAGGAAGAATTTCGGCCGGAAAACGCCATCCTGGTGGTGCGGATCCAGTTCTGGGCGATCGAGGTGGCCAGAAACCGGGAGGGGCATAACGATATCGTACGGATGAAGTTCCGCGGGAGAAATGTAAACAGAGATGTGGAATAAAGTCGCCGAACTCCTCCTCTGCACGCCCTTTTTGTAATCACAAAAAAAAAAAAAAAAGGCCACATGTGCTCGGTGGGCCCGGG] [+] EMBL BM577808 [CCGCTGAGCAGCGAGCAACGAGGTCGCACTGGACGTTGTTTTGTTTGGGCCTTCCGTGGGCGAAAGAAATTAGCCGGATATTTTCATAATTAAAGGCCGCCGCGATGGACGTACTCTCGAGACCGGCGGAAGAATTCGTCAACGATGGCACGGTGGAGGAGCTGTGGGCTGTGAAGGCGGTCGACCATGCCGAGGTACACTTCAATCTCCTGTGCAGTGTCGATCCGCGCCTGCTACGACTGACTCCGTACGATGACGAGATCTACGAGCAGTTCCGGCGGATGTTCCCCGACATGGACGTGCGGGTGGTGAACGAAAGCGAGCTGAAAAGCTC GGACGGCAAAACGAAATGGAGAGCGTACATGGAGAAGTTCAACCGGTTGGAAGATTTCAGCTACGGCACGCTGCTGCGCTCGGACGCGGAGGAAGAATTTCGGCCGGAAAACGCCATCCTGGTGGTGCGGATCCAGTTCTGGGCGATCGAGGTGGCCAGAAACCGGGAGGGGCATAACGATATCGTACGGATGAAGTTCCGCGGGAGAAATGTAA ] [+] EMBL BM583088 [ ccgGCAGCGAGCAACGAGGTCGCACTGGACGTTGTTTTGTTTGGGCCTTCCGTGGGCGAAAGAAATTAGCCGGATATTTTCATAATTAAAGGCCGCCGCGATGGACGTACTCTCGAGACCGGCGGAAGAATTCGTCAACGATGGCACGGTGGAGGAGCTGTGGGCTGTGAAGGCGGTCGACCATGCCGAGGTACACTTCAATCTCCTGTGCAGTGTCGATCCGCGCCTGCTACGACTGACTCCGTACGATGACGAGATCTACGAGCAGTTCCGGCGGATGTTCCCCGACATGGACGTGCGGGTGGTGAACGAAAGCGAGCTGAAAAGCTC GGACGGCAAAACGAAATGGAGAGCGTACATGGAGAAGTTCAACCGGTTGGAAGATTTCAGCTACGGCACGCTGCTGCGCTCGGACGCGGAGGAAGAATTTCGGCCGGAAAACGCCATCCTGGTGGTGCGGATCCAGTTCTGGGCGATCGAGGTGGCCAGAAACCGGGAGGGGCATAACGATATCGTACGGATGAAGTTCCGCGGGAGAAATGTAAAC ] [+] EMBL BM609280 [ ccgGCAACGAGGTCGCACTGGTCGTTGTTTTGTTTGGGCCTTCCGTGGGCGAAAGAAATTAGCCGGATATTTTGATAATTAAAGGCCGCCGCGATGGACGTACTCTCGAGACCGGCGGAAGAATTCGTCAACGATGGCACGGTGGAGGAGCTGTGGGCTGTGAAGGCGGTCGACCACGCCGAGGTACACTTCAATCTCCTGTGCAGTGTCGATCCGCGCCTGCTACGACTGACTCCGTACGATGACGAGATCTACGAGCAGTTCCGGCGGATGTTCCCCGACATGGACGTGCGGGTGGTGAACGAAAGCGAGCTGAAAAGCTC GGACGGCAAAACGAAATGGAGAGCGTACATGGAGAAGTTCAACCGGTTGGAAGATTTCAGCTACGGCACGCTGCTGCGCTCGGACGCGGAGGAAGAATTCCGGCCGGAAAACGCCATCCTGGTGGTGCGGATCCAGTTCTGGGCGATCGAGGTGGCCCGAAACCGGGAGGGGCATAACGATATCGTACGGATGAAGTTCCGCGGGAGAAAT ] [+] EMBL CNS09QIH [ CGCCGCGATGGACGTACTCTCGAGACCGGCGGAAGAATTCGTCAACGATGGCACGGTGGAGGAGCTGTGGGCTGTGAAGGCGGTCGACCATGCCGAGGTACACTTCAATCTCCTGTGCAGTGTCGATCCGCGCCTGCTACGACTGACTCCGTACGATGACGAGATCTACGAGCAGTTCCGGCGGATGTTCCCCGACATGGACGTGCGGGTGGTGAACGAAAGCGAGCTGAAAAGCTCGGGACGGCAAAACGAAATGGAGAGCGTACATGGAGAAGTTCAACCGGTTGGAAGATTTCAGCTACGGCACGCTGCTGCGCTCGGACGCGGAGGAAGAATTTCGGCCGGAAAACGCCATCCTGGTGGTGCGGATCCAGTTCTGGGCGATCGAGGTGGCCAGAAACCGGGAGGGGCATAACGATATCGTACGGATGAAGTTCCGCGGGAGAAATGTAAACAGAGATGTGGAATAAAGTCGCCGAACTCCTCCTCTGCACGCCCTTTTTGTAATCACAAAAAAAAAAAAAAAAGGCCACATGTGCTCGGTGGGCCCGGG] consensusID : consensus_6108#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 547 fasta sequence [GCTCTAAAGCTGGCGGAATTCCTCGAGCACTGTTGGCCTACTGGATTTTCATAATTAAAGGCCGCCGCGATGGACGAACTCTCGAGACCGGCGGAAGAATTCGTCAACGATGGCACGGTGGAGGAGCTGTGGGCTGTGAAGGCGGTCGACCATGCCGAGGTACACTTCAATCTCCTGTGCAGTGTCGATCCGCGCCTGCTACAACTGACTCCGTACGATGACGAGATCTACGAGCAGTTCCGGCGGATGTTCCCCCACATGGACGTGCGGGTGGTGAACGAAAGCGAGCTGAAAAGCTCGGACGGCAAAACGAAATGGAGAGCGTACATGGAGAAGTTCAACCGGTTGGAAGATTTCAGCTACGGCACGCTGTGCGCTCGGACGCGGAGGAAGAATTTCGGCCGGAAAACGCCATCCTGGTGGTGCGGATCCAGTTCTGGGCGATCGAGGTGGCCAGAAACCGGGAGGGGCATAACGATATCGTACGGATGAAGTTCCGCGGGAGAAATGTAAACAGAGATGTGGAATAAAGTCGCCGAACTCCTCC] [-] EMBL CNS09QII [GCTCTAAAGCTGGCGGAATTCCTCGAGCACTGTTGGCCTACTGGATTTTCATAATTAAAGGCCGCCGCGATGGACGAACTCTCGAGACCGGCGGAAGAATTCGTCAACGATGGCACGGTGGAGGAGCTGTGGGCTGTGAAGGCGGTCGACCATGCCGAGGTACACTTCAATCTCCTGTGCAGTGTCGATCCGCGCCTGCTACAACTGACTCCGTACGATGACGAGATCTACGAGCAGTTCCGGCGGATGTTCCCCCACATGGACGTGCGGGTGGTGAACGAAAGCGAGCTGAAAAGCTCGGACGGCAAAACGAAATGGAGAGCGTACATGGAGAAGTTCAACCGGTTGGAAGATTTCAGCTACGGCACGCTGTGCGCTCGGACGCGGAGGAAGAATTTCGGCCGGAAAACGCCATCCTGGTGGTGCGGATCCAGTTCTGGGCGATCGAGGTGGCCAGAAACCGGGAGGGGCATAACGATATCGTACGGATGAAGTTCCGCGGGAGAAATGTAAACAGAGATGTGGAATAAAGTCGCCGAACTCCTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6108#0 CCGCTGAGCAGCGAGCAACGAGGTCGCACTGGACGTTGTTTTGTTTG-GGCCTTCCGTGG 59 consensus_6108#1 ----------------------------------GCTCTAAAGCTGGCGGAATTCCTCGA 26 * * * * * * ** **** * consensus_6108#0 GCGAAAGAAATTAGCCGGATATTTTCATAATTAAAGGCCGCCGCGATGGACGTACTCTCG 119 consensus_6108#1 GCACTGTTGGCCTACTGGAT--TTTCATAATTAAAGGCCGCCGCGATGGACGAACTCTCG 84 ** * **** ****************************** ******* consensus_6108#0 AGACCGGCGGAAGAATTCGTCAACGATGGCACGGTGGAGGAGCTGTGGGCTGTGAAGGCG 179 consensus_6108#1 AGACCGGCGGAAGAATTCGTCAACGATGGCACGGTGGAGGAGCTGTGGGCTGTGAAGGCG 144 ************************************************************ consensus_6108#0 GTCGACCATGCCGAGGTACACTTCAATCTCCTGTGCAGTGTCGATCCGCGCCTGCTACGA 239 consensus_6108#1 GTCGACCATGCCGAGGTACACTTCAATCTCCTGTGCAGTGTCGATCCGCGCCTGCTACAA 204 ********************************************************** * consensus_6108#0 CTGACTCCGTACGATGACGAGATCTACGAGCAGTTCCGGCGGATGTTCCCCGACATGGAC 299 consensus_6108#1 CTGACTCCGTACGATGACGAGATCTACGAGCAGTTCCGGCGGATGTTCCCCCACATGGAC 264 *************************************************** ******** consensus_6108#0 GTGCGGGTGGTGAACGAAAGCGAGCTGAAAAGCTCGGACGGCAAAACGAAATGGAGAGCG 359 consensus_6108#1 GTGCGGGTGGTGAACGAAAGCGAGCTGAAAAGCTCGGACGGCAAAACGAAATGGAGAGCG 324 ************************************************************ consensus_6108#0 TACATGGAGAAGTTCAACCGGTTGGAAGATTTCAGCTACGGCACGCTGCTGCGCTCGGAC 419 consensus_6108#1 TACATGGAGAAGTTCAACCGGTTGGAAGATTTCAGCTACGGCACGCTG-TGCGCTCGGAC 383 ************************************************ *********** consensus_6108#0 GCGGAGGAAGAATTTCGGCCGGAAAACGCCATCCTGGTGGTGCGGATCCAGTTCTGGGCG 479 consensus_6108#1 GCGGAGGAAGAATTTCGGCCGGAAAACGCCATCCTGGTGGTGCGGATCCAGTTCTGGGCG 443 ************************************************************ consensus_6108#0 ATCGAGGTGGCCAGAAACCGGGAGGGGCATAACGATATCGTACGGATGAAGTTCCGCGGG 539 consensus_6108#1 ATCGAGGTGGCCAGAAACCGGGAGGGGCATAACGATATCGTACGGATGAAGTTCCGCGGG 503 ************************************************************ consensus_6108#0 AGAAATGTAAACAGAGATGTGGAATAAAGTCGCCGAACTCCTCCTCTGCACGCCCTTTTT 599 consensus_6108#1 AGAAATGTAAACAGAGATGTGGAATAAAGTCGCCGAACTCCTCC---------------- 547 ******************************************** consensus_6108#0 GTAATCACAAAAAAAAAAAAAAAAGGCCACATGTGCTCGGTGGGCCCGGG 649 consensus_6108#1 -------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||