These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6110#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 697 fasta sequence [ATCGGCACAGGACATTGAGAGCGCATTCGTAAATAATTCTCTGCTAAATACACGAAAAAGGCACCCGATTTTCCTCATTAACGATGCCAAATTGGTACTACGACAAAAAGGACCTACGGAACACACCTTCGGCGAGGGATGGCGTCGATTACGAGACCGAACGGCGGTACCGCAGAGAGGGCGCCCGATTCATCATGGAAGCCGGCGCCTCGATGAGCTTAGGGCACAACACGGTGGCCACGGGTGTTGTTTACTTCCATCGGTTCTACATGTTTCACTCGTTCCGAACGTTCCCACGCTTCGTCACGGCTAGCTGCTGCCTGTTCCTGGCCGGCAAGGTCGAGGAGACGCCAAAGAAGTGTAAGGACATCATCAAAACAGCCCGCGGACTGCTGTCGGACGAGAAGTTCCAGTCGTTCGGTGATGATCCAAAGGAGGAAGTGATGACACTGGAGCGCATCCTGCTCCAAACGATCAAGTTCGATCTGCAGGTAGAGCATCCGTACTCGTTCCTGGTAAAGTACGCCAAATGTCTGAAG-GGTGACTC-GGCCAAGCTGCAGAAAATGGTCCAGATGGCGTGGAACTTTGTGAACGATTCGCTCAGCNACGACCGTGTCGATCCAGTGGGAGCCGGAAATCATTGCCGTAGCACTGATCTATTTGGCCAGCAAGCTCAGCAAGTTCACGGTCGTCGAAT] [+] EMBL BX466433 [ATCGGCACAGGACATTGAGAGCGCATTCGTAAATAATTCTCTGCTAAATACACGAAAAAGGCACCCGATTTTCCTCATTAACGATGCCAAATTGGTACTACGACAAAAAGGACCTACGGAACACACCTTCGGCGAGGGATGGCGTCGATTACGAGACCGAACGGCGGTACCGCAGAGAGGGCGCCCGATTCATCATGGAAGCCGGCGCCTCGATGAGCTTAGGGCACAACACGGTGGCCACGGGTGTTGTTTACTTCCATCGGTTCTACATGTTTCACTCGTTCCGAACGTTCCCACGCTTCGTCACGGCTAGCTGCTGCCTGTTCCTGGCCGGCAAGGTCGAGGAGACGCCAAAGAAGTGTAAGGACATCATCAAAACAGCCCGCGGACTGCTGTCGGACGAGAAGTTCCAGTCGTTCGGTGATGATCCAAAGGAGGAAGTGATGACACTGGAGCGCATCCTGCTCCAAACGATCAAGTTCGATCTGCAGGTAGAGCATCCGTACTCGTTCCTGGTAAAGTACGCCAAATGTCTGAAG GGTGACTC GGCCAAGCTGCAGAAAATGGTCCAGATGGCGTGGAACTTTGTGAACGATTCGCTCAGCNACGACCGTGTCGATCCAGTGGGAGCCGGAAATCATTGCCGTA ] [+] EMBL BM623288 [ ccgtACAAAGAGAGCGCATTCGTAAATAATTCTCTGCTAAATACACGAAAAAGGCACCCGATTTTCCTCATTAACGATGCCAAATTGGTACTACGACAAAAAGGACCTACGGAACACACCTTCGGCGAGGGATGGCGTCGATTACGAGACCGAACGGCGGTACCGCAGAGAGGGCGCCCGATTCATCATGGAAGCCGGCGCCTCGATGAGCTTAGGGCACAACACGGTGGCCACGGGTGTTGTTTACTTCCATCGGTTCTACATGTTTCACTCGTTCCGAACGTTCCCACGCTTCGTCACGGCTAGCTGCTGCCTGTTCCTGGCCGGCAAGGTCGAGGAGACGCCAAAGAAGTGTAAGGACATCATCAAAACAGCCCGCGGACTGCTGTCGGACGAGAAGTTCCAGTCGTTCGGTGATGATCCAAAGGAGGAAGTGATGACACTGGAGCGCATCCTGCTCCAAACGATCAAGTTCGATCTGCAGGTAGAGCATCCGTACTCGTTCCTGGTAAAGTACGCCAAATGTCTGAAG GGTGACTC GGCCAAGCTGCAGAAAATGGTCCAGATGGCGTGGAACTTTGTGAACGATTCGCTCAGC ACGACCGTGTCGATCCAGTGGGAGCCGGAAATCATTGCCGTAGCACTGATCTATTTGGCCAGCAAGCTCAGCAAGTTCACGGTCGTCGAAT] [+] EMBL CNS099MX [ ACACGATAAAGGCACCCGATTTTTCTCATTAACGATGCCAAATTGGTACTACGACAAAAAGGACCTACGGAACACACCTTCGGCGAGGGATGGCGTCGATTACTAGACCGAACGGCGGTACCGCAGAGAGGGCGCCCGATTCATCATGGAAGCCGGCGCCTCGATGAGCTTAGGGCACAACACGGTGGCCACGGGTGTTGTTTACTTCCATCGGTTCTACATGTTTCACTCGTTCCGAACGTTCCCACGCTTCGTCACGGCTAGCTGCTGCCTGTTCCTGGCCGGCAAGGTCGAGGAGACGCCAAAGATGTGTAAGGTCATCATCAAAACAGCCCGCGGACTGCTGTCGGACGAGAAGTTCCAGTCGTTCGGTGATGATCCAAAGGAGGAAGTGATGACACTGGAGCGCATCCTGCTCCAAACGATCAAGTTCGATCTGCAGGTAGAGCATCCGTACTCGTTCCTGGTAAAGTACGCCAAATGTCTGATGTGTTGACTCGGGCCAAGCTGCAGAAAATGGTCCAGATGGCGTGGTACTTTGTTAACGATTCG ] [+] EMBL CNS08WN8 [ TGGCGTCGATTACGAGACCGAACGGCGGTACCGCAGAGAGGGCGCCCGATTCATCATGGAAGCCGGCGCCTCGATGAGCTTAGGGCACAACACGGTGGCCACGGGTGTTGTTTACTTTCATCGGTTCTACATGTTTCACTCATTCCGAACGTTCCCACGCTTCGTCACGGCCAGCTGCTGCTTGTTCCTAGCCGGCAAGGTCGAGGAGACGCCAAAGAAGTGTAAGGACATCATCAAAACAGCCCGCGGACTGCTGTCGGACGAGAAGTTCCAGTCGTTCGGTGATGATCCAAAGGAGGAAGTGATGACACTGGAGCGCATCCTGCTCCAAACGATC ] consensusID : consensus_6110#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 565 fasta sequence [GATTTTCCTCATTAACGATGCCAAATTGGTACTACGACAAAAAGGACCTACGGAACACACCTTCGGCGAGGGATGGCGTCGATTACGAGACCGAACGGCGGTACCGCAGAGAGGGCGCCCGATTCATCATGGAAGCCGGCGCCTCGATGAGCTTAGGGCACAACACGGTGGCCACGGGTGTTGTTTACTTCCATCGGTTCTACATGTTTCACTCGTTCCGAACGTTCCCACGCTTCGTCACGGCTAGCTGCTGCCTGTTCCTGGCCGGCAAGGTCGAGGAGACGCCAAAGAAGTGTAAGGACATCATCAAAACAGCCCNCGGACTGCTGTCNGACGAGAAAGTTCCCAGTCGTNNCGGTGAATGAANNCANAAGGANGGAAGTTGAATGAACNCCTGGGGAGCCGCCTTCCCNGGCCTCCCAAAACCGAANNCNNGGTTNCCGAATCCTGGCCGGGTTAGAAGCCTTCCCGTTACTTCGTTTNCCTNNTTAAAAGTACNCCCANATGTCTGAGGGGTGACTGGGCCAAGCTGCAGAAANTGGGTNCAGATGGCGTGGAAACTTTG] [+] EMBL BX619928 [GATTTTCCTCATTAACGATGCCAAATTGGTACTACGACAAAAAGGACCTACGGAACACACCTTCGGCGAGGGATGGCGTCGATTACGAGACCGAACGGCGGTACCGCAGAGAGGGCGCCCGATTCATCATGGAAGCCGGCGCCTCGATGAGCTTAGGGCACAACACGGTGGCCACGGGTGTTGTTTACTTCCATCGGTTCTACATGTTTCACTCGTTCCGAACGTTCCCACGCTTCGTCACGGCTAGCTGCTGCCTGTTCCTGGCCGGCAAGGTCGAGGAGACGCCAAAGAAGTGTAAGGACATCATCAAAACAGCCCNCGGACTGCTGTCNGACGAGAAAGTTCCCAGTCGTNNCGGTGAATGAANNCANAAGGANGGAAGTTGAATGAACNCCTGGGGAGCCGCCTTCCCNGGCCTCCCAAAACCGAANNCNNGGTTNCCGAATCCTGGCCGGGTTAGAAGCCTTCCCGTTACTTCGTTTNCCTNNTTAAAAGTACNCCCANATGTCTGAGGGGTGACTGGGCCAAGCTGCAGAAANTGGGTNCAGATGGCGTGGAAACTTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6110#0 ATCGGCACAGGACATTGAGAGCGCATTCGTAAATAATTCTCTGCTAAATACACGAAAAAG 60 consensus_6110#1 ------------------------------------------------------------ consensus_6110#0 GCACCCGATTTTCCTCATTAACGATGCCAAATTGGTACTACGACAAAAAGGACCTACGGA 120 consensus_6110#1 ------GATTTTCCTCATTAACGATGCCAAATTGGTACTACGACAAAAAGGACCTACGGA 54 ****************************************************** consensus_6110#0 ACACACCTTCGGCGAGGGATGGCGTCGATTACGAGACCGAACGGCGGTACCGCAGAGAGG 180 consensus_6110#1 ACACACCTTCGGCGAGGGATGGCGTCGATTACGAGACCGAACGGCGGTACCGCAGAGAGG 114 ************************************************************ consensus_6110#0 GCGCCCGATTCATCATGGAAGCCGGCGCCTCGATGAGCTTAGGGCACAACACGGTGGCCA 240 consensus_6110#1 GCGCCCGATTCATCATGGAAGCCGGCGCCTCGATGAGCTTAGGGCACAACACGGTGGCCA 174 ************************************************************ consensus_6110#0 CGGGTGTTGTTTACTTCCATCGGTTCTACATGTTTCACTCGTTCCGAACGTTCCCACGCT 300 consensus_6110#1 CGGGTGTTGTTTACTTCCATCGGTTCTACATGTTTCACTCGTTCCGAACGTTCCCACGCT 234 ************************************************************ consensus_6110#0 TCGTCACGGCTAGCTGCTGCCTGTTCCTGGCCGGCAAGGTCGAGGAGACGCCAAAGAAGT 360 consensus_6110#1 TCGTCACGGCTAGCTGCTGCCTGTTCCTGGCCGGCAAGGTCGAGGAGACGCCAAAGAAGT 294 ************************************************************ consensus_6110#0 GTAAGGACATCATCAAAACAGCCCGCGGACTGCTGTCGGACGAGAAG--TTCCAGTCGTT 418 consensus_6110#1 GTAAGGACATCATCAAAACAGCCCNCGGACTGCTGTCNGACGAGAAAGTTCCCAGTCGTN 354 ************************ ************ ******** * ******** consensus_6110#0 CGG-----TGATGATCCAAAGGAGGAAGT--GATGA--CACTGGAGCGCATCCTGCTCCA 469 consensus_6110#1 NCGGTGAATGAANNCANAAGGANGGAAGTTGAATGAACNCCTGGGGAGCCGCCTTCCCNG 414 * *** ** * ****** **** **** * ** *** * * consensus_6110#0 AACGATCAAGTTCGATCTGCAGGTAG---------------------AGCATCCGTACT- 507 consensus_6110#1 GCCTCCCAAAACCGAANNCNNGGTTNCCGAATCCTGGCCGGGTTAGAAGCCTTCCCGTTA 474 * *** *** *** *** * * * consensus_6110#0 -----CGTTCCTGGT--AAAGTACGCC-AAATGTCTGAAGGGTGACTCGGCCAAGCTGCA 559 consensus_6110#1 CTTCGTTTNCCTNNTTAAAAGTACNCCCANATGTCTGAGGGGTGACTGGGCCAAGCTGCA 534 * *** * ******* ** * ******** ******** ************ consensus_6110#0 GAAAATGG-TCCAGATGGCGTGGAA-CTTTGTGAACGATTCGCTCAGCNACGACCGTGTC 617 consensus_6110#1 GAAANTGGGTNCAGATGGCGTGGAAACTTTG----------------------------- 565 **** *** * ************** ***** consensus_6110#0 GATCCAGTGGGAGCCGGAAATCATTGCCGTAGCACTGATCTATTTGGCCAGCAAGCTCAG 677 consensus_6110#1 ------------------------------------------------------------ consensus_6110#0 CAAGTTCACGGTCGTCGAAT 697 consensus_6110#1 -------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||