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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6115#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1254 fasta sequence
[CCGAGTAGTAGTGAGGATAATTAAATATTATTCTAATTGTAATGATTACGATTATTATTGATAGAGTTTCCTGGGCATACACATACGGCGGAACAAAGGAAGGTTAGGGTGGAAACATAACGGTGAATGCAGAAGCGAAGCGCGCATAATATTTTCGATGTTCTGGCAGGTATGAAAAGAAAGGGATTGTAAGAAAAAGCCAAGGGTGTAAGGCAAAAAAACACATTTCAGAACATAAAATGGTTACGTCTGTGGACGACATCATCACAAATGGACGCAAGCAAAAAAAAAAAAAAAAATACAATCAGCTGGCTGGAAACTGGCCGGAAATAGCGAGTGTGCTTGCGTGTGTGTAGTAGCATGGCTAAAATAGTACAGCAGACAAACCTCGAAGAGGAGGAGGGTGTCGTATGCCGTTTGCAGACCGCAAGATAGATAGGACAGAAATGTGTCTTTGCATTGCCCATATTGTTTAAGAGAACTTGTGTAAATGCATTTGAACAG-TTTTTTTTTGCAGTGTTCTTATTCTACACGCAATTGAAACCATGCTTCACCTTTACCTATGTGCGCGGTCAAATCCTGTACGCTTTCCAGCTTAATTCACATTTTCATAGAACCACCATCGAGCGTGGAATCGAGATGATGCGTAACATCGGGAAAATTGTGTTACACTTTTGCCTCCTGTTTGCTCGTTGTTGTTCATCCTAACAGCAAAAGCAGGTAGCTTGATTTGTTTGGCGACTGTCCCCAGGCCTAGGTTCCCAGGAAACGTACGAAGAAAGAGCAATCCGATCGTTATATCCACCCCAACAATAGATACAGGAGTGTAGCTTCAACGACTGGCGGGCACTATATACAAAAGAACAATAATTGCTGAAACGCCATGTGCACATGTGTTTGATGAGTTTGCGGGTATGATGTCGTATGAATGGGCAAGAGTAGTGTGTG---CGTGAGTGAGAGAAAATTGGGTGTGTGCGATGATGTAGTTTGTATGTGGGCAGTGTGTGCGTGTGTGTG--AGTGTGTACGCGTGTGCAGGGTGCAGAAGGAAGAGGCAGCACTGCGTGTGCTTCGAATGATAGGATATGATGCAAATGGAAATACATCGTTAATTCTAGATACTAGTGAAAATAAATCAGTTAGGGTGCGGCGAGGTGTTTGCGGAAAATGGTGAATGAGAAAATGAATTGCAACAAAAACCTAGGTGTAAAAAAACGAATCGTAATACATTGGCTTTGGTGGTGATACCGTGTGCA]
[+] EMBL BM615210 [CCGAGTAGTAGTGAGGATAATTAAATATTATTCTAATTGTAATGATTACGATTATTATTGATAGAGTTTCCTGGGCATACACATACGGCGGAACAAAGGAAGGTTAGGGTGGAAACATAACGGTGAATGCAGAAGCGAAGCGCGCATAATATTTTCGATGTTCTGGCAGGTATGAAAAGAAAGGGATTGTAAGAAAAAGCCAAGGGTGTAAGGCAAAAAAACACATTTCAGAACATAAAATGGTTACGTCTGTGGACGACATCATCACAAATGGACGCAAGCAAAAAAAAAAAAAAAAATACAATCAGCTGGCTGGAAACTGGCCGGAAATAGCGAGTGTGCTTGCGTGTGTGTAGGAGCATGGCTAAAATAGTACAGCAGACAAACCTCGAAGAGGAGGAGGGTGTCGTATGCCGTTTGCAGACCGCAAGATAGATAGGACAGAAATGTGTCTTTGCATTGCCCATATTGTTTAAGAGAACTTGTGTAAATGCATTTGAACAG TTTTTTTTTGCAGTGTTCTTATTCTACACGCAATTGAAACCATGCTTCACCTTTACCTATGTGCGCGGTCAAATCCTGTACGCTTTCCAGCTTAATTCACATTTTCATAGAACCACCATCGA ]
[+] EMBL BM611639 [ ATACAATCAGCTGGCTGGAAACTGGCCGGAAATAGCGAGTGTGCTTGCGTGTGTGTAGTAGCATGGCTAAAATAGTACAGCAGACAAACCTCGAAGAGGAGGAGGGTGTCGTATGCCGTTTGCAGACCGCAAGATAGATAGGACAGAAATGTGTCTTTGCATTGCCCATATTGTTTAAGAGAACTTGTGTAAATGCATTTGAACAGTTTTTTTTTTGCAGTGTTCTTATTCTACACGCAATTGAAACCATGCTTCACCTTTACCTATGTGCGCGGTCAAATCCTGTACGCTTTCCAGCTTAATTCACATTTTCATAGAACCACCATCGAGCGTGGAATCGAGATGATGCGTAACATCGGGAAAATTGTGTTACACTTTTGCCTCCTGTTTGCTCGTTGTTGTTCATCCTAACAGCAAAAGCAGGTAGCTTGATTTGTTTGGCGACTGTCCCCAGGCCTAGGTTCCCAGGAAACGT ]
[+] EMBL BX612542 [ ACTGGCCGGAAATAGCGAGTGTGCTTGCGTGTGTGTAGTAGCATGGCTAAAATAGTACAGCAGACAAACCTCGAAGAGGAGGAGGGTGTCGTATGCCGTTTGCAGACCGCAAGATAGATAGGACAGAAATGTGTCTTTGCATTGCCCATATTGTTTAAGAGAACTTGTGTAAATGCATTTGAACAG TTTTTTTTGCAGTGTTCTTATTCTACACGCAATTGAAACCATGATTCACCTTTACCTATGTGCGCGGTCAAATCCTGTACGCTTTCCAGCTTAATTCACATTTTCATAGAACCACCATCGAGCGTGGAATCGAGATGATGCGTAACATCGGGAAAATTGTGTTACACTTTTGCCTCCTGTTTGCTCGTTGTTGTTCATCCTAACAGCAAAAGCAGGTAGCTGGATTTGTTTGGCGACTGTCCCCAGGCCTAGGTTCCCAGGAAACGTACGAAGAAAGAGCAATCCGATCGTTATATCCACCCCAACAATAGATACAGGAGTGTAGCTTCAACGACTGGCGGGCACTATATACAAAAGAACAATAATTGCTGAAACGCCATGTGCACATGTGTTTGATGAGTTTGCGGGTATGATGTCGTATGAATGGGCAAGAGTAGTGTGTG CGTGAGTGAGAGAAAATTGGGTGTGTGCGATGATGTAGTTTGTATGTGGGCAGTGTGTGCGTGTGTGTG AGTGTGTACGCGTGTGCAGGGT ]
[+] EMBL BX623172 [ CCTATGTGCGCGGTCAAATCCTGTACGCTTTCCAGCTTAATTCACATTTTCATAGAACCACCATCGAGCGTGGAATCGAGATGATGCGTAACATCGGGAAAATTTTGTTACACTTTTGCCTCCTGTTTGCTCGTTGTTGTTCATCCTAACAGCAAAAGCAGGTAGCTTGATTCGTTTGGCGACTGTCCCCAGGCCTAGGTTCCCAGGAAACGTACGAAGAAAGAGCAATCCGATCGTTATATCCACCCCAACAATAGATTCAGGAGTGTAGCTTCAGCGACTGGCGGGCACTATATACAAAAGAACAATAATTGCTGAAACGCCATGTGCACATGTGTTTGATGAGTTTGCGGGTATGATGTCGTATGAATGGGCAAGAGTAGTGTGTGAGTAGTGAGTGAGAGAAAATTGGGTGTGTGCGATGATGTAGTTTGTATGTGGGCGGTGTGTGCGTGTGTGTGTCAGTGTGTACGCGTGTGTAGGGTGCAGAAGGAAGAGGCAGCACTGCGTGTGCTTCGAATGATAGGATATGATGCAAATGGAAATACATCGTTAATTCTAGATACTAGTGAAAATAAATCAGTTAGGGTGCGGCGAGGTGTTTGCGGAAAATGGTGAATGAGAAAATGAATTGCAACAAAAACCTAGGTGTAAAAAAACGAATCGTAATACATTGGCTTTGGTGGTGATACCGTGTGCA]
consensusID : consensus_6115#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 614 fasta sequence
[AATCGCCCGAGGNTAGTGTGCTTGCGTGTGTAGTAGCATGGCTAAAATAGTACAGCAGACAAACCTCGAAGAGGAGGGTGTCGTATGCCGTTTGCAGACCGCAAGATAGATAGGACAGAAATGTGTCTTTGCATTGCCCATATTGTTTAAGAGAACTTGTGTAAATGCATTTGAACAGGTTTTTTTTTTTGCAGTGTTCTTATTCTACACGCAATTGAAACCATGCTTCACCTTTACCTATGTGCGCGGTCAAATCCTGTACGCTTTCCAGCTTAATTCACATTTTCATAGAACCACCATCGAGCGTGGAATCGAGATGATGCGTAACATCGGGAAAATTTTGTTACACTTTTGCCTCCTGATTTGCTCGTTGTTGTTCATCCTAACAGCAAAAGCAGGTAGCTTGATTTGTCTGGCGACTGTCCCCAGGCCTAGGTTCCCAGGAAACGTACGAAGAANGAGCATCCGATCGTTATATCCACCCCAACAATAGATTCAGGAGTGTATAGCTTCAGCGACTGGCGGGCACTATATACAAAAGAACAACTAATTGCTGAAACGCCATGTGCACATGTGTNGATGAGTTTGCGGGTATGATGTCGCATGAATGGGCN]
[+] EMBL AL934731 [AATCGCCCGAGGNTAGTGTGCTTGCGTGTGTAGTAGCATGGCTAAAATAGTACAGCAGACAAACCTCGAAGAGGAGGGTGTCGTATGCCGTTTGCAGACCGCAAGATAGATAGGACAGAAATGTGTCTTTGCATTGCCCATATTGTTTAAGAGAACTTGTGTAAATGCATTTGAACAGGTTTTTTTTTTTGCAGTGTTCTTATTCTACACGCAATTGAAACCATGCTTCACCTTTACCTATGTGCGCGGTCAAATCCTGTACGCTTTCCAGCTTAATTCACATTTTCATAGAACCACCATCGAGCGTGGAATCGAGATGATGCGTAACATCGGGAAAATTTTGTTACACTTTTGCCTCCTGATTTGCTCGTTGTTGTTCATCCTAACAGCAAAAGCAGGTAGCTTGATTTGTCTGGCGACTGTCCCCAGGCCTAGGTTCCCAGGAAACGTACGAAGAANGAGCATCCGATCGTTATATCCACCCCAACAATAGATTCAGGAGTGTATAGCTTCAGCGACTGGCGGGCACTATATACAAAAGAACAACTAATTGCTGAAACGCCATGTGCACATGTGTNGATGAGTTTGCGGGTATGATGTCGCATGAATGGGCN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6115#0 CCGAGTAGTAGTGAGGATAATTAAATATTATTCTAATTGTAATGATTACGATTATTATTG 60
consensus_6115#1 ------------------------------------------------------------
consensus_6115#0 ATAGAGTTTCCTGGGCATACACATACGGCGGAACAAAGGAAGGTTAGGGTGGAAACATAA 120
consensus_6115#1 ------------------------------------------------------------
consensus_6115#0 CGGTGAATGCAGAAGCGAAGCGCGCATAATATTTTCGATGTTCTGGCAGGTATGAAAAGA 180
consensus_6115#1 ------------------------------------------------------------
consensus_6115#0 AAGGGATTGTAAGAAAAAGCCAAGGGTGTAAGGCAAAAAAACACATTTCAGAACATAAAA 240
consensus_6115#1 ------------------------------------------------------------
consensus_6115#0 TGGTTACGTCTGTGGACGACATCATCACAAATGGACGCAAGCAAAAAAAAAAAAAAAAAT 300
consensus_6115#1 ------------------------------------------------------------
consensus_6115#0 ACAATCAGCTGGCTGGAAACTGGCCGGAAATAGCGAGTGTGCTTGCGTGTGTGTAGTAGC 360
consensus_6115#1 -----------------AATCGCCCGAGGNTAG----TGTGCTTGCGTGTGT--AGTAGC 37
** * *** *** *************** ******
consensus_6115#0 ATGGCTAAAATAGTACAGCAGACAAACCTCGAAGAGGAGGAGGGTGTCGTATGCCGTTTG 420
consensus_6115#1 ATGGCTAAAATAGTACAGCAGACAAACCTCGAAGAGGAGG---GTGTCGTATGCCGTTTG 94
**************************************** *****************
consensus_6115#0 CAGACCGCAAGATAGATAGGACAGAAATGTGTCTTTGCATTGCCCATATTGTTTAAGAGA 480
consensus_6115#1 CAGACCGCAAGATAGATAGGACAGAAATGTGTCTTTGCATTGCCCATATTGTTTAAGAGA 154
************************************************************
consensus_6115#0 ACTTGTGTAAATGCATTTGAACAG---TTTTTTTTTGCAGTGTTCTTATTCTACACGCAA 537
consensus_6115#1 ACTTGTGTAAATGCATTTGAACAGGTTTTTTTTTTTGCAGTGTTCTTATTCTACACGCAA 214
************************ *********************************
consensus_6115#0 TTGAAACCATGCTTCACCTTTACCTATGTGCGCGGTCAAATCCTGTACGCTTTCCAGCTT 597
consensus_6115#1 TTGAAACCATGCTTCACCTTTACCTATGTGCGCGGTCAAATCCTGTACGCTTTCCAGCTT 274
************************************************************
consensus_6115#0 AATTCACATTTTCATAGAACCACCATCGAGCGTGGAATCGAGATGATGCGTAACATCGGG 657
consensus_6115#1 AATTCACATTTTCATAGAACCACCATCGAGCGTGGAATCGAGATGATGCGTAACATCGGG 334
************************************************************
consensus_6115#0 AAAATTGTGTTACACTTTTGCCTCCTG-TTTGCTCGTTGTTGTTCATCCTAACAGCAAAA 716
consensus_6115#1 AAAATTTTGTTACACTTTTGCCTCCTGATTTGCTCGTTGTTGTTCATCCTAACAGCAAAA 394
****** ******************** ********************************
consensus_6115#0 GCAGGTAGCTTGATTTGTTTGGCGACTGTCCCCAGGCCTAGGTTCCCAGGAAACGTACGA 776
consensus_6115#1 GCAGGTAGCTTGATTTGTCTGGCGACTGTCCCCAGGCCTAGGTTCCCAGGAAACGTACGA 454
****************** *****************************************
consensus_6115#0 AGAAAGAGCAATCCGATCGTTATATCCACCCCAACAATAGATACAGGAGTGTA--GCTTC 834
consensus_6115#1 AGAANGAGCA-TCCGATCGTTATATCCACCCCAACAATAGATTCAGGAGTGTATAGCTTC 513
**** ***** ******************************* ********** *****
consensus_6115#0 AACGACTGGCGGGCACTATATACAAAAGAACAA-TAATTGCTGAAACGCCATGTGCACAT 893
consensus_6115#1 AGCGACTGGCGGGCACTATATACAAAAGAACAACTAATTGCTGAAACGCCATGTGCACAT 573
* ******************************* **************************
consensus_6115#0 GTGTTTGATGAGTTTGCGGGTATGATGTCGTATGAATGGGCAAGAGTAGTGTGTGCGTGA 953
consensus_6115#1 GTGTN-GATGAGTTTGCGGGTATGATGTCGCATGAATGGGCN------------------ 614
**** ************************ **********
consensus_6115#0 GTGAGAGAAAATTGGGTGTGTGCGATGATGTAGTTTGTATGTGGGCAGTGTGTGCGTGTG 1013
consensus_6115#1 ------------------------------------------------------------
consensus_6115#0 TGTGAGTGTGTACGCGTGTGCAGGGTGCAGAAGGAAGAGGCAGCACTGCGTGTGCTTCGA 1073
consensus_6115#1 ------------------------------------------------------------
consensus_6115#0 ATGATAGGATATGATGCAAATGGAAATACATCGTTAATTCTAGATACTAGTGAAAATAAA 1133
consensus_6115#1 ------------------------------------------------------------
consensus_6115#0 TCAGTTAGGGTGCGGCGAGGTGTTTGCGGAAAATGGTGAATGAGAAAATGAATTGCAACA 1193
consensus_6115#1 ------------------------------------------------------------
consensus_6115#0 AAAACCTAGGTGTAAAAAAACGAATCGTAATACATTGGCTTTGGTGGTGATACCGTGTGC 1253
consensus_6115#1 ------------------------------------------------------------
consensus_6115#0 A 1254
consensus_6115#1 -
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||