These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6117#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 524 fasta sequence [GGACTAGTGGGAAGGGTACAATCATGGTAATAGGACCACAGCAAAATGATACCGTAGTACAAGTGATGATAACTCCAACGGGATGCAACTGGGAGATTGCAGCATGTATGCATGTCGGCAATTCGTTTGCAGAAGTATTACAGTGTTTGGTTCACCGGCCGGTACAGCAATTATGCATTAGAAGAGGGAATGAGAGAGTTTAATTTGTACAGTGGTATATATTGCGAGGGAGGGCAAATCAAGTTGACAAGTCACGTTTGGAGCGGGTTGATTGAGACAAGATTGCAAAAATATATTATGAACTACTGTCTACAATAGCAGTAGCAGCTAGCTGAACACGTATGTTTGCGATCGTGCACACATAAAACAAACTCCGTATATACAAGCTGTGTAATGTGTGCGGCGTGGCAAATTTTACCAGCTCGCTCATAAAAACGTTTATATCTCTTATTTACAAAGCATCTATAATCGAGAGAAATGATCCTAATAAAGAATCTATTTGAGATGTTTAAATGTAAAAAAAA] [+] EMBL AGA285072 [GGACTAGTGGGAAGGGTACAATCATGGTAATAGGACCACAGCAAAATGATACCGTAGTACAAGTGATGATAACTCCAACGGGATGCAACTGGGAGATTGCAGCATGTATGCATGTCGGCAATTCGTTTGCAGAAGTATTACAGTGTTTGGTTCACCGGCCGGTACAGCAATTATGCATTAGAAGAGGGAATGAGAGAGTTTAATTTGTACAGTGGTATATATTGCGAGGGAGGGCAAATCAAGTTGACAAGTCACGTTTGGAGCGGGTTGATTGAGACAAGATTGCAAAAATATATTATGAACTACTGTCTACAATAGCAGTAGCAGCTAGCTGAACACGTATGTTTGCGATCGTGCACACATAAAACAAACTCCGTATATACAAGCTGTGTAATGTGTGCGGCGTGGCAAATTTTACCAGCTCGCTCATAAAAACGTTTATATCTCTTATTTACAAAGCATCTAT ] [+] EMBL AGA285283 [GGACTAGTGGGAAGGGTACAATCATGGTAATAGGACCACAGCAAAATGATACCGTAGTACAAGTGATGATAACTCCAACGGGATGCAACTGGGAGATTGCAGCATGTATGCATGTCGGCAATTCGTTTGCAGAAGTATTACAGTGTTTGGTTCACCGGCCGGTACAGCAATTATGCATTAGAAGAGGGAATGAGAGAGTTTAATTTGTACAGTGGTATATATTGCGAGGGAGGGCAAATCAAGTTGACAAGTCACGTTTGGAGCGGGTTGATTGAGACAAGATTGCAAAAATATATTATGAACTACTGTCTACAATAGCAGTAGCAGCTAGCTGAACACGTATGTTTGCGATCGTGCACACATAAAACAAACTCCGTATATACAAGCTGTGTAATGTGTGCGGCGTGGCAAATTTTACCAGCTCGCTCATAAA ] [-] EMBL AGA283781 [ GGAGATTGCAGCATGTATGCATGTCGGCAATTCGTTTGCAGAAGTATTACAGTGTTTGGTTCACCGGCCGGTACAGCAATTATGCATTAGAAGAGGGAATGAGAGAGTTTAATTTGTACAGTGGTATATATTGCGAGGGAGGGCAAATCAAGTTGACAAGTCACGTTTGGAGCGGGTTGATTGAGACAAGATTGCAAAAATATATTATGAACTACTGTCTACAATAGCAGTAGCAGCTAGCTGAACACGTATGTTTGCGATCGTGCACACATAAAACAAACTCCGTATATACAAGCTGTGTAATGTGTGCGGCGTGGCAAATTTTACCAGCTCGCTCATAAAAACGTTTATATCTCTTATTTACAAAGCATCTATAATCGAGAGAAATGATCCTAATAAAGAATCTATTTGAGATGTTTAAATGTAAAAAAAA] [-] EMBL AGA283987 [ CAATTCGTTTGCAGAAGTATTACAGTGTTTGGTTCACCGGCCGGTACAGCAATTATGCATTAGAAGAGGGAATGAGAGAGTTTAATTTGTACAGTGGTATATATTGCGAGGGAGGGCAAATCAAGTTGACAAGTCACGTTTGGAGCGGGTTGATTGAGACAAGATTGCAAAAATATATTATGAACTACTGTCTACAATAGCAGTAGCAGCTAGCTGAACACGTATGTTTGCGATCGTGCACACATAAAACAAACTCCGTATATACAAGCTGTGTAATGTGTGCGGCGTGGCAAATTTTACCAGCTCGCTCATAAAAACGTTTATATCTCTTATTTACAAAGCATCTATAATCGAGAGAAATGATCCTAATAAAGAATCTATTTGAGATGTTTTATTGTAAAAAAAA] consensusID : consensus_6117#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 453 fasta sequence [CCGCGGACGCGTGGGCGGGATGCAAGTGGGAGATTGCAGCATGTATGCATGTCGGCAATTCGTTTGCAGAAGTATTACAGTGTTTGGTTCACCGGCCGGTACAGCAATTATGCATTAGAAGAGGGAATGAGAGAGTTTAATTTGTACAGTGGTATATATTGCGAGGGAGGGCAAATCAAGTTGACAAGTCACGTTTGGAGCGGGTTGATTGAGACAAGATTGCAAAAATATATTATGAACTACTGCCTACAATAGCAGTAGCAGCTAGCTGAACACGTATGTTTGCGATCGTGCACACATAAAACAAACTCCGTATATACAAGCTGTGTAATGTGTGCGGCGTGGCAAATTTTACCAGCTCGCTCATAAAAACGTTTATATCTCTTATTTACAAAGCATCTATAATCGAGAGAAATGATCCTAATAAAGAATCTATTTGAGATGTTTAAATGT] [+] EMBL BM590164 [CCGCGGACGCGTGGGCGGGATGCAAGTGGGAGATTGCAGCATGTATGCATGTCGGCAATTCGTTTGCAGAAGTATTACAGTGTTTGGTTCACCGGCCGGTACAGCAATTATGCATTAGAAGAGGGAATGAGAGAGTTTAATTTGTACAGTGGTATATATTGCGAGGGAGGGCAAATCAAGTTGACAAGTCACGTTTGGAGCGGGTTGATTGAGACAAGATTGCAAAAATATATTATGAACTACTGCCTACAATAGCAGTAGCAGCTAGCTGAACACGTATGTTTGCGATCGTGCACACATAAAACAAACTCCGTATATACAAGCTGTGTAATGTGTGCGGCGTGGCAAATTTTACCAGCTCGCTCATAAAAACGTTTATATCTCTTATTTACAAAGCATCTATAATCGAGAGAAATGATCCTAATAAAGAATCTATTTGAGATGTTTAAATGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6117#0 GGACTAGTGGGAAGGGTACAATCATGGTAATAGGACCACAGCAAAATGATACCGTAGTAC 60 consensus_6117#1 ------------------------------------------------------------ consensus_6117#0 AAGTGATGATAACTCCAACGGGATGCAACTGGGAGATTGCAGCATGTATGCATGTCGGCA 120 consensus_6117#1 ---CCGCGGACGCGTGGGCGGGATGCAAGTGGGAGATTGCAGCATGTATGCATGTCGGCA 57 * * ********** ******************************* consensus_6117#0 ATTCGTTTGCAGAAGTATTACAGTGTTTGGTTCACCGGCCGGTACAGCAATTATGCATTA 180 consensus_6117#1 ATTCGTTTGCAGAAGTATTACAGTGTTTGGTTCACCGGCCGGTACAGCAATTATGCATTA 117 ************************************************************ consensus_6117#0 GAAGAGGGAATGAGAGAGTTTAATTTGTACAGTGGTATATATTGCGAGGGAGGGCAAATC 240 consensus_6117#1 GAAGAGGGAATGAGAGAGTTTAATTTGTACAGTGGTATATATTGCGAGGGAGGGCAAATC 177 ************************************************************ consensus_6117#0 AAGTTGACAAGTCACGTTTGGAGCGGGTTGATTGAGACAAGATTGCAAAAATATATTATG 300 consensus_6117#1 AAGTTGACAAGTCACGTTTGGAGCGGGTTGATTGAGACAAGATTGCAAAAATATATTATG 237 ************************************************************ consensus_6117#0 AACTACTGTCTACAATAGCAGTAGCAGCTAGCTGAACACGTATGTTTGCGATCGTGCACA 360 consensus_6117#1 AACTACTGCCTACAATAGCAGTAGCAGCTAGCTGAACACGTATGTTTGCGATCGTGCACA 297 ******** *************************************************** consensus_6117#0 CATAAAACAAACTCCGTATATACAAGCTGTGTAATGTGTGCGGCGTGGCAAATTTTACCA 420 consensus_6117#1 CATAAAACAAACTCCGTATATACAAGCTGTGTAATGTGTGCGGCGTGGCAAATTTTACCA 357 ************************************************************ consensus_6117#0 GCTCGCTCATAAAAACGTTTATATCTCTTATTTACAAAGCATCTATAATCGAGAGAAATG 480 consensus_6117#1 GCTCGCTCATAAAAACGTTTATATCTCTTATTTACAAAGCATCTATAATCGAGAGAAATG 417 ************************************************************ consensus_6117#0 ATCCTAATAAAGAATCTATTTGAGATGTTTAAATGTAAAAAAAA 524 consensus_6117#1 ATCCTAATAAAGAATCTATTTGAGATGTTTAAATGT-------- 453 ************************************ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||