cluster # 6130

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Anopheles gambiae
cluster # 6130 cluster # 6130 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6130#0 length = 942 sequences # 4

consensus_6130#1 length = 362 sequences # 1

consensusID : consensus_6130#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 942
fasta sequence

                              [GGGCACACCCAGGCCCGGCCAGACGACGAGCTACAGTTGCCTTCCCTTCGCCCTTCCCTTCCCCCCCCCCTCTCTCTCTGTCATCCCCTCCTATTTAACAAACGATCAACACACACACACACATACAACATTAAACAAATATGGTAATTAAAATCAAAGCGAATTCTTGTCATGTAAATTAGAATTGAATACTCAAACGTTTTTAAACGAATAATCGAGCCTCTCGTGTAATATATACAAACATACATACATGCATGCATGCATACATACATACATACATACTTATATTAACAACAAATTACTTTTTTTCGTCGTTATTTGCCCCCCCCCCGTTCCCTCCCACAAACAGAATAAGGCTAAAATGAATCTCTAATCCATTTTTTTTTTAATTTTTCGTTTGTAAAATGACACTCAAACGACAAACCGGGGTCGAGGTAGGAGCTCAGACATTCGCTACAGCCTATAGTCCAGCCAGGACTGCGTCCTACCACGGGGTGCTAGGGGGAAAATAAAGGGAGAAAAAATAGGCCCTGCTTGCGGGGAAATAATTTCCAAAAGCTTTTTTCTCGTACACCCCACCAACGGGGCTCGGACCCCGAGGGGAGTAAACAATCACTAGTAATCTTCCCCATCATCCCTCCCTCCCTTCCTCCCCATCTCACACCTTCAACCCTTAATTTTGTTAGACGATACAGCAGAGCGTGTAGTGGACGAGCTAAGGAAAAGGCAGCGCAAAGTATTTCGTATCTTTTTTTTTAACTAGACAAGTGTCAATTGTGTAAATAGCCGCGTACAATGAATTCATTCATCCATTAACCAACCACAACCATGTATAACCGCCCACGAACACGAAAAGACAAACAAACAGTCACACACACACACATACATGCAAGGAATTAAAAAAACAACAGTTGTAATAAAATAATTTAAACTTAAAAAAAA]

[+] EMBL BX620570             [GGGCACACCCAGGCCCGGCCAGACGACGAGCTACAGTTGCCTTCCCTTCGCCCTTCCCTTCCCCCCCCCCTCTCTCTCTGTCATCCCCTCCTATTTAACAAACGATCAACACACACACACACATACAACATTAAACAAATATGGTAATTAAAATCAAAGCGAATTCTTGTCATGTAAATTAGAATTGAATACTCAAACGTTTTTAAACGAATAATCGAGCCTCTCGTGTAATATATACAAACATACATACATGCATGCATGCATACATACATACATACATACTTATATTAACAACAAATTACTTTTTTTCGTCGTTATTTGCCCCCCCCCCGTTCCCTCCCACAAACAGAATAAGGCTAAAATGAATCTCTAATCCATTTTTTTTTTAATTTTTCGTTTGTAAAATGACACTCAAACGACAAACCGGGGTCGAGGTAGGAGCTCAGACATTCGCTACAGCCTATAGTCCAGCCAGGACTGCGTCCTACCACGGGGTGCTAGGGGGAAAATAAAGGGAGAAAAAATAGGCCCTGCTTGCGGGGAAATAATTTCCAAAAGCTTTTTTCTCGTACACCCCACCAACGGGGCTCGGACCCCGAGGGGAGTAAACAATCACTAGTAATCTTCCCCATCATCCCTCCCTCCCTTCCTCCCCATCTCACACCTTCAACCCTTAATTTTGTTAGACGATACAGCAGAGCGTGTAGTGGACGAGC                                                                                                                                                                                                                                  ]
[+] EMBL BX620271             [     CACCCAGGCCCGGNCAGACGACGAGCTACAGTTGCCTTCCCTTCGCCCTTCCCTTCCCCCCCCCCTCTCTCTCTGTCATCCCCTCCTATTTAACAAACGATCAACACACACACACACATACAACATTAAACAAATATGGTAATTAAAATCAAAGCGAATTCTTGTCATGTAAATTAGAATTGAATACTCAAACGTTTTTAAACGAATAATCGAGCCTCTCGTGTAATATATACAAACATACATACATGCATGCATGCATACATACATACATACATACTTATATTAACAACAAATTACTTTTTTTCGTCGTTATTTGCCCCCCCCCCGTTCCCTCCCACAAACAGAATAAGGCTAAAATGAATCTCTAATCCATTTTTTTTTTAATTTTTCGTTTGTAAAATGACACTCAAACGACAAACCGGGGTCGAGGTAGGAGCTCAGACATTCGCTACAGCCTATAGTCCAGCCAGGACTGCGTCCTACCACGGGGTGCTAGGGGGAAAATAAAGGGAGAAAAAATAGGCCCTGCTTGCGGGGAAATAATTTCCAAAAGCTTTTTTCTCGTACACCCCACCAACGGGGCTCGGACCCCGAGGGGAGTAAACCATCACTAGTAATCTTCCCa                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AGA285061            [                                                                                                                                                                                                                                                                                                                                                                                         TTTTTTTTTTTTTTTTTCGTTTGTAAAATGACACTCAAACGACAAACCGGGGTCGAGGTAGGAGCTCAGACATTCGCTACAGCCTATAGTCCAGCCAGGACTGCGTCCTACCACGGGGTGCTAGGGGGAAAATAAAGGGAGAAAAAATAGGCCCTGCTTGCGGGGAAATAATTTCCAAAAGCTTTTTTCTCGTACACCCCACCAACGGGGCTCGGACCCCGAGGGGAGTAAACAATCACTAGTAATCTTCCCCATCATCCCTCCCTCCCTTCCTCCCCATCTCACACCTTCAACCCTTAATTTTGTTAGACGATACAGCAGAGCGTGTAGTGGACGAGCTAAGGAAAAGGCAGCGCAAAGTATTTCGTATCTTTT                                                                                                                                                                                              ]
[-] EMBL AGA283770            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CCTTCAACCCTTAATTTTGTTAGACGATACAGCAGAGCGTGTAGTGGACGAGCTAAGGAAAAGGCAGCGCAAAGTATTTCGTATCTTTTTTTTTAACTAGACAAGTGTCAATTGTGTAAATAGCCGCGTACAATGAATTCATTCATCCATTAACCAACCACAACCATGTATAACCGCCCACGAACACGAAAAGACAAACAAACAGTCACACACACACACATACATGCAAGGAATTAAAAAAACAACAGTTGTAATAAAATAATTTAAACTTAAAAAAAA]




>consensus_6130#0
GGGCACACCCAGGCCCGGCCAGACGACGAGCTACAGTTGCCTTCCCTTCGCCCTTCCCTT
CCCCCCCCCCTCTCTCTCTGTCATCCCCTCCTATTTAACAAACGATCAACACACACACAC
ACATACAACATTAAACAAATATGGTAATTAAAATCAAAGCGAATTCTTGTCATGTAAATT
AGAATTGAATACTCAAACGTTTTTAAACGAATAATCGAGCCTCTCGTGTAATATATACAA
ACATACATACATGCATGCATGCATACATACATACATACATACTTATATTAACAACAAATT
ACTTTTTTTCGTCGTTATTTGCCCCCCCCCCGTTCCCTCCCACAAACAGAATAAGGCTAA
AATGAATCTCTAATCCATTTTTTTTTTAATTTTTCGTTTGTAAAATGACACTCAAACGAC
AAACCGGGGTCGAGGTAGGAGCTCAGACATTCGCTACAGCCTATAGTCCAGCCAGGACTG
CGTCCTACCACGGGGTGCTAGGGGGAAAATAAAGGGAGAAAAAATAGGCCCTGCTTGCGG
GGAAATAATTTCCAAAAGCTTTTTTCTCGTACACCCCACCAACGGGGCTCGGACCCCGAG
GGGAGTAAACAATCACTAGTAATCTTCCCCATCATCCCTCCCTCCCTTCCTCCCCATCTC
ACACCTTCAACCCTTAATTTTGTTAGACGATACAGCAGAGCGTGTAGTGGACGAGCTAAG
GAAAAGGCAGCGCAAAGTATTTCGTATCTTTTTTTTTAACTAGACAAGTGTCAATTGTGT
AAATAGCCGCGTACAATGAATTCATTCATCCATTAACCAACCACAACCATGTATAACCGC
CCACGAACACGAAAAGACAAACAAACAGTCACACACACACACATACATGCAAGGAATTAA
AAAAACAACAGTTGTAATAAAATAATTTAAACTTAAAAAAAA

consensusID : consensus_6130#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 362
fasta sequence

                              [ACAAGGCGTCGGGATTTGTGTAGCGGGCGGGACAGAAAAAGGCAGCAAATTCGCTTAGGGCACACCCAGGCCCGGCCAGACGACGAGCTACAGTTGCCTTCCCTTCGCCCTTCCCTTCCCCCCCCCCCTCTCTCTGTCATCCCCTCCTATTTAACAAACGATCAACACACACACACTCTCTCACACACACACATATACAACATAAAACAAATATGGTAATTAAAATCAAAGCGAATTCTTGTCATGTAAATTAGAATTGAATACTCAAACGTTTTTAAACGAATAATCGAGCCTCTCGTGTAATATATACAAACATACATACATGCATGCATACATACATACATACATACTTATATTAACAA]

[+] EMBL BM653498             [ACAAGGCGTCGGGATTTGTGTAGCGGGCGGGACAGAAAAAGGCAGCAAATTCGCTTAGGGCACACCCAGGCCCGGCCAGACGACGAGCTACAGTTGCCTTCCCTTCGCCCTTCCCTTCCCCCCCCCCCTCTCTCTGTCATCCCCTCCTATTTAACAAACGATCAACACACACACACTCTCTCACACACACACATATACAACATAAAACAAATATGGTAATTAAAATCAAAGCGAATTCTTGTCATGTAAATTAGAATTGAATACTCAAACGTTTTTAAACGAATAATCGAGCCTCTCGTGTAATATATACAAACATACATACATGCATGCATACATACATACATACATACTTATATTAACAA]




>consensus_6130#1
ACAAGGCGTCGGGATTTGTGTAGCGGGCGGGACAGAAAAAGGCAGCAAATTCGCTTAGGG
CACACCCAGGCCCGGCCAGACGACGAGCTACAGTTGCCTTCCCTTCGCCCTTCCCTTCCC
CCCCCCCCTCTCTCTGTCATCCCCTCCTATTTAACAAACGATCAACACACACACACTCTC
TCACACACACACATATACAACATAAAACAAATATGGTAATTAAAATCAAAGCGAATTCTT
GTCATGTAAATTAGAATTGAATACTCAAACGTTTTTAAACGAATAATCGAGCCTCTCGTG
TAATATATACAAACATACATACATGCATGCATACATACATACATACATACTTATATTAAC
AA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6130#0      ---------------------------------------------------------GGG 3
consensus_6130#1      ACAAGGCGTCGGGATTTGTGTAGCGGGCGGGACAGAAAAAGGCAGCAAATTCGCTTAGGG 60
                                                                               ***

consensus_6130#0      CACACCCAGGCCCGGCCAGACGACGAGCTACAGTTGCCTTCCCTTCGCCCTTCCCTTCCC 63
consensus_6130#1      CACACCCAGGCCCGGCCAGACGACGAGCTACAGTTGCCTTCCCTTCGCCCTTCCCTTCCC 120
                      ************************************************************

consensus_6130#0      CCCCCCCTCTCTCTCTGTCATCCCCTCCTATTTAACAAACGATCAACACACACACAC--- 120
consensus_6130#1      CCCCCCC-CTCTCTCTGTCATCCCCTCCTATTTAACAAACGATCAACACACACACACTCT 179
                      ******* *************************************************   

consensus_6130#0      -------------ACATACAACATTAAACAAATATGGTAATTAAAATCAAAGCGAATTCT 167
consensus_6130#1      CTCACACACACACATATACAACATAAAACAAATATGGTAATTAAAATCAAAGCGAATTCT 239
                                   * ********* ***********************************

consensus_6130#0      TGTCATGTAAATTAGAATTGAATACTCAAACGTTTTTAAACGAATAATCGAGCCTCTCGT 227
consensus_6130#1      TGTCATGTAAATTAGAATTGAATACTCAAACGTTTTTAAACGAATAATCGAGCCTCTCGT 299
                      ************************************************************

consensus_6130#0      GTAATATATACAAACATACATACATGCATGCATGCATACATACATACATACATACTTATA 287
consensus_6130#1      GTAATATATACAAACATACATACATGCATGCAT----ACATACATACATACATACTTATA 355
                      *********************************    ***********************

consensus_6130#0      TTAACAACAAATTACTTTTTTTCGTCGTTATTTGCCCCCCCCCCGTTCCCTCCCACAAAC 347
consensus_6130#1      TTAACAA----------------------------------------------------- 362
                      *******                                                     

consensus_6130#0      AGAATAAGGCTAAAATGAATCTCTAATCCATTTTTTTTTTAATTTTTCGTTTGTAAAATG 407
consensus_6130#1      ------------------------------------------------------------
                                                                                  

consensus_6130#0      ACACTCAAACGACAAACCGGGGTCGAGGTAGGAGCTCAGACATTCGCTACAGCCTATAGT 467
consensus_6130#1      ------------------------------------------------------------
                                                                                  

consensus_6130#0      CCAGCCAGGACTGCGTCCTACCACGGGGTGCTAGGGGGAAAATAAAGGGAGAAAAAATAG 527
consensus_6130#1      ------------------------------------------------------------
                                                                                  

consensus_6130#0      GCCCTGCTTGCGGGGAAATAATTTCCAAAAGCTTTTTTCTCGTACACCCCACCAACGGGG 587
consensus_6130#1      ------------------------------------------------------------
                                                                                  

consensus_6130#0      CTCGGACCCCGAGGGGAGTAAACAATCACTAGTAATCTTCCCCATCATCCCTCCCTCCCT 647
consensus_6130#1      ------------------------------------------------------------
                                                                                  

consensus_6130#0      TCCTCCCCATCTCACACCTTCAACCCTTAATTTTGTTAGACGATACAGCAGAGCGTGTAG 707
consensus_6130#1      ------------------------------------------------------------
                                                                                  

consensus_6130#0      TGGACGAGCTAAGGAAAAGGCAGCGCAAAGTATTTCGTATCTTTTTTTTTAACTAGACAA 767
consensus_6130#1      ------------------------------------------------------------
                                                                                  

consensus_6130#0      GTGTCAATTGTGTAAATAGCCGCGTACAATGAATTCATTCATCCATTAACCAACCACAAC 827
consensus_6130#1      ------------------------------------------------------------
                                                                                  

consensus_6130#0      CATGTATAACCGCCCACGAACACGAAAAGACAAACAAACAGTCACACACACACACATACA 887
consensus_6130#1      ------------------------------------------------------------
                                                                                  

consensus_6130#0      TGCAAGGAATTAAAAAAACAACAGTTGTAATAAAATAATTTAAACTTAAAAAAAA 942
consensus_6130#1      -------------------------------------------------------