These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6130#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 942 fasta sequence [GGGCACACCCAGGCCCGGCCAGACGACGAGCTACAGTTGCCTTCCCTTCGCCCTTCCCTTCCCCCCCCCCTCTCTCTCTGTCATCCCCTCCTATTTAACAAACGATCAACACACACACACACATACAACATTAAACAAATATGGTAATTAAAATCAAAGCGAATTCTTGTCATGTAAATTAGAATTGAATACTCAAACGTTTTTAAACGAATAATCGAGCCTCTCGTGTAATATATACAAACATACATACATGCATGCATGCATACATACATACATACATACTTATATTAACAACAAATTACTTTTTTTCGTCGTTATTTGCCCCCCCCCCGTTCCCTCCCACAAACAGAATAAGGCTAAAATGAATCTCTAATCCATTTTTTTTTTAATTTTTCGTTTGTAAAATGACACTCAAACGACAAACCGGGGTCGAGGTAGGAGCTCAGACATTCGCTACAGCCTATAGTCCAGCCAGGACTGCGTCCTACCACGGGGTGCTAGGGGGAAAATAAAGGGAGAAAAAATAGGCCCTGCTTGCGGGGAAATAATTTCCAAAAGCTTTTTTCTCGTACACCCCACCAACGGGGCTCGGACCCCGAGGGGAGTAAACAATCACTAGTAATCTTCCCCATCATCCCTCCCTCCCTTCCTCCCCATCTCACACCTTCAACCCTTAATTTTGTTAGACGATACAGCAGAGCGTGTAGTGGACGAGCTAAGGAAAAGGCAGCGCAAAGTATTTCGTATCTTTTTTTTTAACTAGACAAGTGTCAATTGTGTAAATAGCCGCGTACAATGAATTCATTCATCCATTAACCAACCACAACCATGTATAACCGCCCACGAACACGAAAAGACAAACAAACAGTCACACACACACACATACATGCAAGGAATTAAAAAAACAACAGTTGTAATAAAATAATTTAAACTTAAAAAAAA] [+] EMBL BX620570 [GGGCACACCCAGGCCCGGCCAGACGACGAGCTACAGTTGCCTTCCCTTCGCCCTTCCCTTCCCCCCCCCCTCTCTCTCTGTCATCCCCTCCTATTTAACAAACGATCAACACACACACACACATACAACATTAAACAAATATGGTAATTAAAATCAAAGCGAATTCTTGTCATGTAAATTAGAATTGAATACTCAAACGTTTTTAAACGAATAATCGAGCCTCTCGTGTAATATATACAAACATACATACATGCATGCATGCATACATACATACATACATACTTATATTAACAACAAATTACTTTTTTTCGTCGTTATTTGCCCCCCCCCCGTTCCCTCCCACAAACAGAATAAGGCTAAAATGAATCTCTAATCCATTTTTTTTTTAATTTTTCGTTTGTAAAATGACACTCAAACGACAAACCGGGGTCGAGGTAGGAGCTCAGACATTCGCTACAGCCTATAGTCCAGCCAGGACTGCGTCCTACCACGGGGTGCTAGGGGGAAAATAAAGGGAGAAAAAATAGGCCCTGCTTGCGGGGAAATAATTTCCAAAAGCTTTTTTCTCGTACACCCCACCAACGGGGCTCGGACCCCGAGGGGAGTAAACAATCACTAGTAATCTTCCCCATCATCCCTCCCTCCCTTCCTCCCCATCTCACACCTTCAACCCTTAATTTTGTTAGACGATACAGCAGAGCGTGTAGTGGACGAGC ] [+] EMBL BX620271 [ CACCCAGGCCCGGNCAGACGACGAGCTACAGTTGCCTTCCCTTCGCCCTTCCCTTCCCCCCCCCCTCTCTCTCTGTCATCCCCTCCTATTTAACAAACGATCAACACACACACACACATACAACATTAAACAAATATGGTAATTAAAATCAAAGCGAATTCTTGTCATGTAAATTAGAATTGAATACTCAAACGTTTTTAAACGAATAATCGAGCCTCTCGTGTAATATATACAAACATACATACATGCATGCATGCATACATACATACATACATACTTATATTAACAACAAATTACTTTTTTTCGTCGTTATTTGCCCCCCCCCCGTTCCCTCCCACAAACAGAATAAGGCTAAAATGAATCTCTAATCCATTTTTTTTTTAATTTTTCGTTTGTAAAATGACACTCAAACGACAAACCGGGGTCGAGGTAGGAGCTCAGACATTCGCTACAGCCTATAGTCCAGCCAGGACTGCGTCCTACCACGGGGTGCTAGGGGGAAAATAAAGGGAGAAAAAATAGGCCCTGCTTGCGGGGAAATAATTTCCAAAAGCTTTTTTCTCGTACACCCCACCAACGGGGCTCGGACCCCGAGGGGAGTAAACCATCACTAGTAATCTTCCCa ] [+] EMBL AGA285061 [ TTTTTTTTTTTTTTTTTCGTTTGTAAAATGACACTCAAACGACAAACCGGGGTCGAGGTAGGAGCTCAGACATTCGCTACAGCCTATAGTCCAGCCAGGACTGCGTCCTACCACGGGGTGCTAGGGGGAAAATAAAGGGAGAAAAAATAGGCCCTGCTTGCGGGGAAATAATTTCCAAAAGCTTTTTTCTCGTACACCCCACCAACGGGGCTCGGACCCCGAGGGGAGTAAACAATCACTAGTAATCTTCCCCATCATCCCTCCCTCCCTTCCTCCCCATCTCACACCTTCAACCCTTAATTTTGTTAGACGATACAGCAGAGCGTGTAGTGGACGAGCTAAGGAAAAGGCAGCGCAAAGTATTTCGTATCTTTT ] [-] EMBL AGA283770 [ CCTTCAACCCTTAATTTTGTTAGACGATACAGCAGAGCGTGTAGTGGACGAGCTAAGGAAAAGGCAGCGCAAAGTATTTCGTATCTTTTTTTTTAACTAGACAAGTGTCAATTGTGTAAATAGCCGCGTACAATGAATTCATTCATCCATTAACCAACCACAACCATGTATAACCGCCCACGAACACGAAAAGACAAACAAACAGTCACACACACACACATACATGCAAGGAATTAAAAAAACAACAGTTGTAATAAAATAATTTAAACTTAAAAAAAA] consensusID : consensus_6130#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 362 fasta sequence [ACAAGGCGTCGGGATTTGTGTAGCGGGCGGGACAGAAAAAGGCAGCAAATTCGCTTAGGGCACACCCAGGCCCGGCCAGACGACGAGCTACAGTTGCCTTCCCTTCGCCCTTCCCTTCCCCCCCCCCCTCTCTCTGTCATCCCCTCCTATTTAACAAACGATCAACACACACACACTCTCTCACACACACACATATACAACATAAAACAAATATGGTAATTAAAATCAAAGCGAATTCTTGTCATGTAAATTAGAATTGAATACTCAAACGTTTTTAAACGAATAATCGAGCCTCTCGTGTAATATATACAAACATACATACATGCATGCATACATACATACATACATACTTATATTAACAA] [+] EMBL BM653498 [ACAAGGCGTCGGGATTTGTGTAGCGGGCGGGACAGAAAAAGGCAGCAAATTCGCTTAGGGCACACCCAGGCCCGGCCAGACGACGAGCTACAGTTGCCTTCCCTTCGCCCTTCCCTTCCCCCCCCCCCTCTCTCTGTCATCCCCTCCTATTTAACAAACGATCAACACACACACACTCTCTCACACACACACATATACAACATAAAACAAATATGGTAATTAAAATCAAAGCGAATTCTTGTCATGTAAATTAGAATTGAATACTCAAACGTTTTTAAACGAATAATCGAGCCTCTCGTGTAATATATACAAACATACATACATGCATGCATACATACATACATACATACTTATATTAACAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6130#0 ---------------------------------------------------------GGG 3 consensus_6130#1 ACAAGGCGTCGGGATTTGTGTAGCGGGCGGGACAGAAAAAGGCAGCAAATTCGCTTAGGG 60 *** consensus_6130#0 CACACCCAGGCCCGGCCAGACGACGAGCTACAGTTGCCTTCCCTTCGCCCTTCCCTTCCC 63 consensus_6130#1 CACACCCAGGCCCGGCCAGACGACGAGCTACAGTTGCCTTCCCTTCGCCCTTCCCTTCCC 120 ************************************************************ consensus_6130#0 CCCCCCCTCTCTCTCTGTCATCCCCTCCTATTTAACAAACGATCAACACACACACAC--- 120 consensus_6130#1 CCCCCCC-CTCTCTCTGTCATCCCCTCCTATTTAACAAACGATCAACACACACACACTCT 179 ******* ************************************************* consensus_6130#0 -------------ACATACAACATTAAACAAATATGGTAATTAAAATCAAAGCGAATTCT 167 consensus_6130#1 CTCACACACACACATATACAACATAAAACAAATATGGTAATTAAAATCAAAGCGAATTCT 239 * ********* *********************************** consensus_6130#0 TGTCATGTAAATTAGAATTGAATACTCAAACGTTTTTAAACGAATAATCGAGCCTCTCGT 227 consensus_6130#1 TGTCATGTAAATTAGAATTGAATACTCAAACGTTTTTAAACGAATAATCGAGCCTCTCGT 299 ************************************************************ consensus_6130#0 GTAATATATACAAACATACATACATGCATGCATGCATACATACATACATACATACTTATA 287 consensus_6130#1 GTAATATATACAAACATACATACATGCATGCAT----ACATACATACATACATACTTATA 355 ********************************* *********************** consensus_6130#0 TTAACAACAAATTACTTTTTTTCGTCGTTATTTGCCCCCCCCCCGTTCCCTCCCACAAAC 347 consensus_6130#1 TTAACAA----------------------------------------------------- 362 ******* consensus_6130#0 AGAATAAGGCTAAAATGAATCTCTAATCCATTTTTTTTTTAATTTTTCGTTTGTAAAATG 407 consensus_6130#1 ------------------------------------------------------------ consensus_6130#0 ACACTCAAACGACAAACCGGGGTCGAGGTAGGAGCTCAGACATTCGCTACAGCCTATAGT 467 consensus_6130#1 ------------------------------------------------------------ consensus_6130#0 CCAGCCAGGACTGCGTCCTACCACGGGGTGCTAGGGGGAAAATAAAGGGAGAAAAAATAG 527 consensus_6130#1 ------------------------------------------------------------ consensus_6130#0 GCCCTGCTTGCGGGGAAATAATTTCCAAAAGCTTTTTTCTCGTACACCCCACCAACGGGG 587 consensus_6130#1 ------------------------------------------------------------ consensus_6130#0 CTCGGACCCCGAGGGGAGTAAACAATCACTAGTAATCTTCCCCATCATCCCTCCCTCCCT 647 consensus_6130#1 ------------------------------------------------------------ consensus_6130#0 TCCTCCCCATCTCACACCTTCAACCCTTAATTTTGTTAGACGATACAGCAGAGCGTGTAG 707 consensus_6130#1 ------------------------------------------------------------ consensus_6130#0 TGGACGAGCTAAGGAAAAGGCAGCGCAAAGTATTTCGTATCTTTTTTTTTAACTAGACAA 767 consensus_6130#1 ------------------------------------------------------------ consensus_6130#0 GTGTCAATTGTGTAAATAGCCGCGTACAATGAATTCATTCATCCATTAACCAACCACAAC 827 consensus_6130#1 ------------------------------------------------------------ consensus_6130#0 CATGTATAACCGCCCACGAACACGAAAAGACAAACAAACAGTCACACACACACACATACA 887 consensus_6130#1 ------------------------------------------------------------ consensus_6130#0 TGCAAGGAATTAAAAAAACAACAGTTGTAATAAAATAATTTAAACTTAAAAAAAA 942 consensus_6130#1 ------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||