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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6133#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 693 fasta sequence
[CCCGAGGTTAAAGAACGTCGAGCATAGNGCCTGGTCTACAAAATCATCACCAGTGCTCATCATTGCAGGAGGGCTCGAGCAGGGAAGTCTTGAGGGAATTTGCATATCGTTGCACAGTACCTCGCTGCAGTTTGGTTTGTAAATTGTGAAGTGCACCATTTCGAGTTGAGTTTCTTTGGAGGCTGTGCAATTTTCCTGTACAGCAGAATTGTGCAAGTGTAGTACGTAGTTGCAAAATCACCGGCACCGTGTTTCGCGAGTTCCTGTGGCTGGCGGTCTTACTGACACCGCCAAATTGGCAGTA--TTTTTTGCAACACGAATGGTGCTC---GTGTGACGTCGCTAGAACCCATCATCATTCCATGCGTTTTGCCGGATTACAAGGTGCCGCAGAGGATTAGAAACGTCCGTATCTTATCATCTTTGGAACCAACAGGGGTCANAGCTTTNAGCGCTTTCGAGCACTACAACCTGCTGACGCCATCTGTNCCATCGTCCGGTGCGGTACATTCGAGCAACCAACGTCAATAAACGGAGTATCACCAATTTCCCGAAANNGATCGANGCCACGCATTGAAAATTCCATCGNGCGACGATGCCATGGCAGAGCTGCGGGCTATCTTGAAAGTTACACGGACGACAACCATGACAGGTCAGGCTTCTTGCACGAGTCTCAGTACGATGCGGCAAAACGGC]
[+] EMBL AL693299 [CCCGAGGTTAAAGAACGTCGAGCATAGNGCCTGGTCTACAAAATCATCACCAGTGCTCATCATTGCAGGAGGGCTCGAGCAGGGAAGTCTTGAGGGAATTTGCATATCGTTGCACAGTACCTCGCTGCAGTTTGGTTTGTAAATTGTGAAGTGCACCATTTCGAGTTGAGTTTCTTTGGAGGCTGTGCAATTTTCCTGTACAGCAGAATTGTGCAAGTGTAGTACGTAGTTGCAAAATCACCGGCACCGTGTTTCGCGAGTTCCTGTGGCTGGCGGTCTTACTGACACCGCCAAATTGGCAGTA TTTTTTGCAACACGAATGGTGCTC GTGTGACGTCGCTAGAACCCATCATCATTCCATGCGTTTTGCCGGATTACAAGGTGCCGCAGAGGATTAGAAACGTCCGTATCTTATCATCTTTGGAACCAACAGGGGTCANAGCTTTNAGCGCTTTCGAGCACTACAACCTGCTGACGCCATCTGTNCCATCGTCCGGTGCGGTACATTCGAGCAACCAACGTCAATAAACGGAGTATCACCAATTTCCCGAAANNGATCGANGCCACGCATTGAAAATTCCATCGNGCGACGATGCCATGGCAGAGCTGCGGGCTATCTTGAAAGTTACACGGACGACAACCATGACAGGTCAGGCTTCTTGCACGAGTCTCAGTACGATGCGGCAAAACGGC]
[+] EMBL BM651271 [ ACAAAATCATTACCAGTGCTCATCATTGCAGGAGGGCTCGAGCAGGGAAGTCTTGAGGGAATTTGCATATCGTTGCACAGTACCTCGCTGCAGTTTCGTTTGTAAATTGTGAAGTGCACCATTTCGAGTTGAGTTTCTGTGGAGGCTGTGCAATTTTCCTGTACAGCAGAATTGTGCAAGTGTAGTACGTAGTTGCAAAATCACCGGCATCGTGTTTCGCGAGTTCCTGTGGCTGGCGGTCTTACTGACACCG CAAATTGG AGTATTTTTTTTGCTACA GAATGGTGCTCATTTTGTGACGTCG ]
consensusID : consensus_6133#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 682 fasta sequence
[CCGCGGACGCGTGGGCGAGCAGGGAAGTCTTGAGGGAATTTGCATATCGTTGCACAGTACCTCGCTGCAGTTTGGTTTGTAAATTGTGAAGTGCACCATTTCGAGTTGAGTTTCTGTGGAGGCTGTGCAATTTTCATGTACAGCAGAATTGTGCAAGTGTAGTACGTAGTTGCAAAATCACCGGCACCGTGTTTCGCGAGTTCCTGTGGCTGGCGGTCTTACTGACACCGCAAATTGGAGTA-TTTTTTGCAACAGAATGGTGCTCATTTTGTGACGTCGCTAGAACCCATCATCCTTCCATGCGTTTGGCCGGATTATAAGGTGCCGCAGAGGATTAGAAACGTCCGTATCTTATCATCTTTGGCAACCAACAGGGGTCAAGCTTTTAGCGCTTTCGAGCACTACAACCTGCTGACGCCATCTGTTCCATCGTCCGGTGCGGTACATTCGAGCAAACCAACGTCAATAAACGGAGTATCACCAATTTCCCGAAGGAT-GAGGCCACGCATTGAAAATTCCATCGGCGACGATGCCATGGAGAGCTGCGGCTATCTGAAGTTCACGGACGAAACCATGAAGTCAAGCTTCTTGCAGAGTCTCAGTACGATGCGGAAAAACCGGCTCTTCTGCGACGTGGTATTACTGGTGGAAAATACAGAAATCCATGCGCATCGGAATGTGC]
[+] EMBL BM592978 [CCGCGGACGCGTGGGCGAGCAGGGAAGTCTTGAGGGAATTTGCATATCGTTGCACAGTACCTCGCTGCAGTTTGGTTTGTAAATTGTGAAGTGCACCATTTCGAGTTGAGTTTCTGTGGAGGCTGTGCAATTTTCATGTACAGCAGAATTGTGCAAGTGTAGTACGTAGTTGCAAAATCACCGGCACCGTGTTTCGCGAGTTCCTGTGGCTGGCGGTCTTACTGACACCGCAAATTGGAGTA TTTTTTGCAACAGAATGGTGCTCATTTTGTGACGTCGCTAGAACCCATCATCCTTCCATGCGTTTGGCCGGATTATAAGGTGCCGCAGAGGATTAGAAACGTCCGTATCTTATCATCTTTGGCAACCAACAGGGGTCAAGCTTTTAGCGCTTTCGAGCACTACAACCTGCTGACGCCATCTGTTCCATCGTCCGGTGCGGTACATTCGAGCAAACCAACGTCAATAAACGGAGTATCACCAATTTCCCGAAGGAT GAGGCCACGCATTGAAAATTCCATCGGCGACGATGCCATGGAGAGCTGCGGCTATCTGAAGTTCACGGACGAAACCATGAAGTCAAGCTTCTTGCAGAGTCTCAGTACGATGCGGAAAAACCGGCTCTTCTGCGACGTGGTATTACTGGTGGAAAATACAGAAATCCATGCGCATCGGAATGTGC]
[+] EMBL CNS08OJB [ GTTGCAAAATCACCGGCACCGTGTTTCGCGAGTCCCTGTGGCTGGCGGTCTTACTGACACCGCAAATTGGAGTATTTTTTTGCAACAGAATGGTGCTCATTTTGTGACGTCGCTAGAACCCATCATCCTTCCATGCGTTTGGCCGGATTATAAGGTGCCGCAGAGGATTAGAAACGTCCGTATCTTATCTTTTTTGGCAACCAACAGGGGTCAAGCTTTTAGCGCTTTCGAGCACTACAACCTGCTGACGCCATCAGTTCCATCGTCCGGTGCGGTACATTCGAGCAAACCAACGTCAATAAACGGAGTATCACCAATTTCCCGAA GATAGAGGCCACGCATTGAAAATTCCATCGGCGACGATGCCATGGAGAGCTGCGGCTATCTGAAGTTCACGGACGAAACCATGAAGTCAAGCTTCTTGCAGAGTCTCAGTACGATGCGGAAAAACCGGCTCTTCTGCGACGTGGTATTACTGGTGGAAAATACAGAAATCCATGCGCATCGGAAT ]
consensusID : consensus_6133#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 661 fasta sequence
[CCGCACAAGTGAGAAACAAAACATAGGACCCAAGGAGAGTCGAGCCTCCGTACGCCATGATTCAGAAAATTGTACTCCATTGTGCCGAGTGCGTCGATGGTTTGTGTGGCGATGGAAAACACCCCCCTCGTACCGTGCTAAACAGTGAGCTAATTCAAACAGTAAACACTACTACTACACCACTCATTCGCCACTGCTGCTGATGGTGATGAGCAAGAGCGCTTTGCGAGACTTTCAATATCACAGGAATTGCCTTCCTGAGGAGGTGTGGAGTGTTGGATTTCTTTCTCTTTACCTCATGAAACTGAACTAAATCGAACAAGTTCTTTGCGGTTAGTGGCGTTGTACAGTGTTTATCCTATTTGCTGCTGAATGCATTGCACGGTCGAGAAACAATCCTATTCAGCAGATTCTACATTGATCCATCATCTTTAAACTGTGCACCATGGATCCAAGGGGTCAAGCTTTTAGCGCTTTCGAGCACTACAACCTGCTGACGCCATCAGTTCCATCTTCCGGTGCGGTACATTCGAGCAAACCAACGTCAATAAACGGAGTATCACCAATTTCCCGAAGGATGAGGCCACGCATTGAAAATTCCATCGGCGACGATGCCATGGAGAGCTGCGGCTATCTGAAGTTCACGGACGAAACCATGAAG]
[+] EMBL BM624263 [CCGCACAAGTGAGAAACAAAACATAGGACCCAAGGAGAGTCGAGCCTCCGTACGCCATGATTCAGAAAATTGTACTCCATTGTGCCGAGTGCGTCGATGGTTTGTGTGGCGATGGAAAACACCCCCCTCGTACCGTGCTAAACAGTGAGCTAATTCAAACAGTAAACACTACTACTACACCACTCATTCGCCACTGCTGCTGATGGTGATGAGCAAGAGCGCTTTGCGAGACTTTCAATATCACAGGAATTGCCTTCCTGAGGAGGTGTGGAGTGTTGGATTTCTTTCTCTTTACCTCATGAAACTGAACTAAATCGAACAAGTTCTTTGCGGTTAGTGGCGTTGTACAGTGTTTATCCTATTTGCTGCTGAATGCATTGCACGGTCGAGAAACAATCCTATTCAGCAGATTCTACATTGATCCATCATCTTTAAACTGTGCACCATGGATCCAAGGGGTCAAGCTTTTAGCGCTTTCGAGCACTACAACCTGCTGACGCCATCAGTTCCATCTTCCGGTGCGGTACATTCGAGCAAACCAACGTCAATAAACGGAGTATCACCAATTTCCCGAAGGATGAGGCCACGCATTGAAAATTCCATCGGCGACGATGCCATGGAGAGCTGCGGCTATCTGAAGTTCACGGACGAAACCATGAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6133#0 -CCCGAGGTTAAAGAACGTCGAGCATAGNGCCTGGTCTACAAAATCATCACCAGTGCTCA 59
consensus_6133#1 ------------------------------------------------------------
consensus_6133#2 CCGCACAAGTGAGAAACAAAACATAGGACCCAAGGAGAGTCGAGCCTCCGTACGCCATGA 60
consensus_6133#0 TCATTGCAGGAGGGCTCGAGCAGGG-AAGTCTTGAGGGAATTTGCATATCGTTGCACAGT 118
consensus_6133#1 -CCGCGGACGCGTGGGCGAGCAGGG-AAGTCTTGAGGGAATTTGCATATCGTTGCACAGT 58
consensus_6133#2 TTCAGAAAATTGTACTCCATTGTGCCGAGTGCGTCGATGGTTTGTGTGGCGATGGAAAAC 120
* * * * * *** * **** * ** ** * *
consensus_6133#0 ACCTCGCT-GCAGTTTGGTTTGTAAATTGTGAAGTGCACCATTTCGAGTTGAGTTTCTTT 177
consensus_6133#1 ACCTCGCT-GCAGTTTGGTTTGTAAATTGTGAAGTGCACCATTTCGAGTTGAGTTTCTGT 117
consensus_6133#2 ACCCCCCTCGTACCGTGCTAAACAGTGAGCTAATTCAAACAGT--AAACACTACTACTAC 178
*** * ** * * ** * * * ** * * ** * * * **
consensus_6133#0 GGAGGCTGTGCAATTTTCCTGTACAGCAGAATTGTGCAAGTGTAGTACGTAG---TTGCA 234
consensus_6133#1 GGAGGCTGTGCAATTTTCATGTACAGCAGAATTGTGCAAGTGTAGTACGTAG---TTGCA 174
consensus_6133#2 ACCACTCATTCGCCACTGCTGC-TGATGGTGATGAGCAAGAGCGCTTTGCGAGACTTTCA 237
* * * ** * ** ***** * * * ** **
consensus_6133#0 AAATCACCGGCACCGTGTTTC--GCGAGTTCCTGTG-GCTGGCGGTCTTACTG---ACAC 288
consensus_6133#1 AAATCACCGGCACCGTGTTTC--GCGAGTTCCTGTG-GCTGGCGGTCTTACTG---ACAC 228
consensus_6133#2 ATATCACAGGAATTGCCTTCCTGAGGAGGTGTGGAGTGTTGGATTTCTTTCTCTTTACCT 297
* ***** ** * * ** * *** * * * * *** **** ** **
consensus_6133#0 CGCCAAATTGGCAGTATTTTTTGCAACACGAATGGTGCTCGT---GTG--ACGTCGCTAG 343
consensus_6133#1 CGC-AAATTGG-AGTATTTTTTGCAACA-GAATGGTGCTCATTTTGTG--ACGTCGCTAG 283
consensus_6133#2 CATGAAACTGA-ACTAAATCGAACAAGTTCTTTGCGGTTAGTGGCGTTGTACAGTGTTTA 356
* *** ** * ** * *** ** * * * ** ** * *
consensus_6133#0 AACCCATCATCATTCCATGCGTT---TTGCCGGATTACAAGGTGCCGCAGAGGATTAGAA 400
consensus_6133#1 AACCCATCATCCTTCCATGCGTT---TGGCCGGATTATAAGGTGCCGCAGAGGATTAGAA 340
consensus_6133#2 TCCTATTTGCTGCTGAATGCATTGCACGGTCGAGAAACAATCCTATTCAGCAGATTCTAC 416
* * * **** ** * ** * ** *** **** *
consensus_6133#0 AC--GTCCGTATCTTATCATCTTTG-G-AACCAAC---AGGGGTCANAGCTTTNAGCGCT 453
consensus_6133#1 AC--GTCCGTATCTTATCATCTTTG-GCAACCAAC---AGGGGTCAA-GCTTTTAGCGCT 393
consensus_6133#2 ATTGATCCATCATCTTTAAACTGTGCACCATGGATCCAAGGGGTCAA-GCTTTTAGCGCT 475
* *** * * * * ** ** * * ******** ***** ******
consensus_6133#0 TTCGAGCACTACAACCTGCTGACGCCATCTGTNCCATCGTCCGGTGCGGTACATTCGAGC 513
consensus_6133#1 TTCGAGCACTACAACCTGCTGACGCCATCTGTTCCATCGTCCGGTGCGGTACATTCGAGC 453
consensus_6133#2 TTCGAGCACTACAACCTGCTGACGCCATCAGTTCCATCTTCCGGTGCGGTACATTCGAGC 535
***************************** ** ***** *********************
consensus_6133#0 AA-CCAACGTCAATAAACGGAGTATCACCAATTTCCCGAAANNGATCGANGCCACGCATT 572
consensus_6133#1 AAACCAACGTCAATAAACGGAGTATCACCAATTTCCCGAAGGA---TGAGGCCACGCATT 510
consensus_6133#2 AAACCAACGTCAATAAACGGAGTATCACCAATTTCCCGAAGGA---TGAGGCCACGCATT 592
** ************************************* ** **********
consensus_6133#0 GAAAATTCCATCGNGCGACGATGCCATGGCAGAGCTGCGGGCTATCTTGAAAGTTACACG 632
consensus_6133#1 GAAAATTCCATCGG-CGACGATGCCATGG-AGAGCTGCGG-CTATCT--GAAGTT-CACG 564
consensus_6133#2 GAAAATTCCATCGG-CGACGATGCCATGG-AGAGCTGCGG-CTATCT--GAAGTT-CACG 646
************* ************** ********** ****** ***** ****
consensus_6133#0 GACGACAACCATGACAGGTCAGGCTTCTTGCACGAGTCTCAGTACGATGCGGCAAAAC-G 691
consensus_6133#1 GACGA-AACCATGA--AGTCAAGCTTCTTGCA-GAGTCTCAGTACGATGCGGAAAAACCG 620
consensus_6133#2 GACGA-AACCATGA--AG------------------------------------------ 661
***** ******** *
consensus_6133#0 GC---------------------------------------------------------- 693
consensus_6133#1 GCTCTTCTGCGACGTGGTATTACTGGTGGAAAATACAGAAATCCATGCGCATCGGAATGT 680
consensus_6133#2 ------------------------------------------------------------
consensus_6133#0 --
consensus_6133#1 GC 682
consensus_6133#2 --
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||