cluster # 6138

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Anopheles gambiae
cluster # 6138 cluster # 6138 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6138#0 length = 854 sequences # 4

consensus_6138#1 length = 553 sequences # 1

consensusID : consensus_6138#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 854
fasta sequence

                              [CAAAAATGATTTTTTATTGCTCTTGCACTGAACGTAACAAAC--AAAAAGAAGCTCCATTTCAAAATGACGGCCGACCAAAATTGACGACTTTTCACTTTTCTTGTACCGCTGACCCAAGCAGTTGAGCAATTTTTGCGCCCTCTGTTGCGATAGCAAATTTAAATGC-GCCGTTTTTACG-CCCCTTTTCTTTGAT-CGCTT-TATGCTGAAGAAGATGCTAATGGAATGGATGAAAAGCATGGCTTGTTCGAGTGGAGTGCACAACACAAGCAATCGATTGTATTTTCACTTTCACAAACCCTGACAGATAAGGATGCGA-AATCAATCTTTTGCTGTGCTGTAATGGAAGAAAGTGCTATTAACGTAGAAGGAATTGGAAGAACATTTTCTCGACCGGCTGTAATACAATCTGGCCGCCCTG-GGGGGGAA-GGGGAATGTGTCTGTTGCGTGCGTTCGTTGGTCCGTGTGTGCGTGATTCCGGATGCCTC-ACACCAGGCGGCATATTTAACATTTTAAGTAACAATACTAGAAA-AACAGCAGTCAGTTCCTGCGCTCC-GTTCTCCTGCTTCGCGCGTCTAAATGCGGCTCTTGCCACTGCCCGTCTTGATGTCGAACAGCTTCCGGACAAAGTACACCTGCACCGAGGTGGTGAACACGATCACCAGGATCTGCAGCACGGACCACTTCCAGATGTACGCATTGTTGTCCAGAATCAGCGCATAATCGCGGGCCTCGTTGTTGCGCGAGTGGGCCTGATACTGGAACATGGCGTTCAGGTTCCTTTCCACCGTCGAAATGGTGCCCGTAAAGTTGTCCATGTTGACGTTCAAATCTTCGATCTCTCAGTAGGCCAACAG]

[-] EMBL BM588022             [CAAAAATGATTTTTTATTGCTCTTGCACTGAACGTAACAAACAAAAAAAGAAGCTCCATTTCAAAATGACGGCCGACCAAAATTGACGACTTTTCACTTTTCTTGTACCGCTGACCCAAGCAGTTGAGCAATTTTTGCGCCCTCTGTTGCGATAGCAAATTTAAATGC GCCGTTTTTACG CCCCTTTTCTTTGAT CGCTT TATGCTGAAGAAGATGCTAATGGAATGGATGAAAAGCATGGCTTGTTCGAGTGGAGTGCACAACACAAGCAATCGATTGTATTTTCACTTTCACAAACCCTGACAGATAAGGATGCGA AATCAATCTTTTGCTGTGCTGTAATGGAAGAAAGTGCTATTAACGTAGAAGGAATTGGAAGAACATTTTCTCGACCGGCTGcgg                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CNS09O2Y             [               ATTGCTCTTGCACTGAACGTAACAAAC  AAAAAGAAGCTCCATTTCAAGATGACGACCGACCAAAATTGACGACTTTTCACTTTTCTTGTACCGCTGACCCAAGCAGTTGAGCAATTTTGGTGCTCTCTGTTGCGATA CAAATTTAAATGC GCCGTTTTTATG CCCCTTTTCTTTGAT CCCTTATATGCTGCAGAAGATGCAAATGGAATGGATGAAAAGCATGGTTTGTTCGAGTGGAGTGCACAACAAAAGCAATCGATTGTATTTTCACTTGCACAAACCCTGACAGATAAGGATGCGA AATCAATCTTTTGCTGTACTGTAATGGAAGAAAATTACATTAACGTAGAAGGAATTGGAAGAACATTTTCTCGACCGGCTGTAATACAATCTGGCCGCCCTGAGGGGGGAAGGGGGAATGTGTATATGGCGTGCGTTCGTTGGTCCGTGTGTCCGTAATTTCGGATGCCTC AAACCAGGGGGCATATTTAACATTTTAAGTAACAATACTAGAAA AACAGCAGTTAGTTCCTGCGCTCC GTTCTCCTGCTTCGCGCGTTTAAATGCGGCTCTTGCCACTGCCCGTTTTGATGTCGAACAGCTTCCGGACAAAGTACACCTGCACCGAGGTGGTGAACACGATCACCAGGATCTGCAGCACGGACCACTTCCAGATGTACGCATTGTTGTCCAGAATCAGCGCATAATCGCGGGCCTTGTTGTTGCGCGAGTTGGCCTGATACTGGAACATGGCGTTCAGGTTCCTTTCCACCGTCGAAATGGTGCCCGTAAAGTTGTCCATGTTGACGTTCAAATCTTCGATCTCTCAGTAGGCCAACAG]
[-] EMBL BX625339             [                                                       CCATTTCAAAATGACGNCNGACCAAAATTGACGACTTTTCACTTTTCTTGTACCGCTGACCCAAGCAGTTGAGCAATTTTTGCGCCNTCTGTTGCGATAGCAAATTTAAATGC GCCGTTTTTACG CCCCTTTTCTTTGAT CGCTT TATGCTGAAGAAGATGCTAATGGAATGGATGAAAAGCATGGCTTGTTCGAGTGGAGTGCACAACACAAGCAATCGATTGTATTTTCACTTTCACAAACCCTGACAGATAAGGATGCGA AATCAATCTTTTGCTGTGCTGTAATGGAAGAAAGTGCTATTAACGTAGAAGGAATTGGAAGAACATTTTCTCGACCGGCTGTAATACAATCTGGCCGCCCT  GGGGGGAA GGGGAATGTGTCTGTTGCGTGCGTTCGTTGGTCCGTGTGTGCTTGATTCCCGATGCCACTACACCAGGCGGCATATTTAACATTTTAAGTAACAATACTAGAAACAACAGCAGTCAGTTCCTGCGCCCCTCTTCTCCTGCTTCGCGCGTCTAAATGCGGCTCTTGCCACTGCCCGTCTTGATGTCGAACAGCTTCCGGACAAAGTACACCTGCACCGAGGTGGTGAACACGATCACCAGGATCTGCAGCACGGACCACTTCCAGATGTACGCATTGTTGTCCAGAATCAGCGCATAATCGCGGGCCTCGTTGTTGCGCGAGTGGGCCTGATACTGGAACATGGCGTTCAGGTTCCGTTCCA                                                                      ]
[-] EMBL CF542122             [                                                                                                                                                                   AATGCNGCCGTTTNTATGCCCCCTNNTNTTNGATCCNNTA TATGCTGCAGAAGATGCNAATGNNATGGATGAAAAGCATGGTTTGTTCGAGTGGAGTGCACAACAAAAGCNATCGATTGTATTTTCACTTGCACAAACCCTGACAGATAAGGATGCGANNATCAATCTTTTGCTGTACTGTAATGGAAGAAAATTACATTAACGTAGAAGGAATTGGAAGAACATTTTCTCGACCGGCTGTAATACAATCTGGCCGCCCTG GGGGGGAA GGGGAATGTGTCTGTTGCGTGCGTTCGTTGGTCCGTGTGTGCGTGATTCCGGATGCCTC ACACCAGGCGGCATATTTAACATTTTAAGTAACAATACTAGAAA AACAGCAGTCAGTTCCTGCGCTCC GTTCTCCTGCTTCGCGCGTCTAAATGCGGCTCTTGCCACTGCCCGTCTTGATGTCGAACAGCTTCCGGACAAAGTACACCTGCACCGAGGTGGTGAACACGATCACCAGGATATGCAGCACGGACCACTTCCAGATGTACGCATTGTTGTCCAGAATCAGCGCATAATCGCGGGCCTCGTTGTTGCGCGAGTGGGCCTGATACTGGAACATGGCGTTCAGGTTCCTTTCCACCGTCGAAATGGTGCCCGTAAAGTTGTTCATGTTGACGTTCAAATCTTCGATCTCcttggtga       ]




>consensus_6138#0
CAAAAATGATTTTTTATTGCTCTTGCACTGAACGTAACAAACAAAAAGAAGCTCCATTTC
AAAATGACGGCCGACCAAAATTGACGACTTTTCACTTTTCTTGTACCGCTGACCCAAGCA
GTTGAGCAATTTTTGCGCCCTCTGTTGCGATAGCAAATTTAAATGCGCCGTTTTTACGCC
CCTTTTCTTTGATCGCTTTATGCTGAAGAAGATGCTAATGGAATGGATGAAAAGCATGGC
TTGTTCGAGTGGAGTGCACAACACAAGCAATCGATTGTATTTTCACTTTCACAAACCCTG
ACAGATAAGGATGCGAAATCAATCTTTTGCTGTGCTGTAATGGAAGAAAGTGCTATTAAC
GTAGAAGGAATTGGAAGAACATTTTCTCGACCGGCTGTAATACAATCTGGCCGCCCTGGG
GGGGAAGGGGAATGTGTCTGTTGCGTGCGTTCGTTGGTCCGTGTGTGCGTGATTCCGGAT
GCCTCACACCAGGCGGCATATTTAACATTTTAAGTAACAATACTAGAAAAACAGCAGTCA
GTTCCTGCGCTCCGTTCTCCTGCTTCGCGCGTCTAAATGCGGCTCTTGCCACTGCCCGTC
TTGATGTCGAACAGCTTCCGGACAAAGTACACCTGCACCGAGGTGGTGAACACGATCACC
AGGATCTGCAGCACGGACCACTTCCAGATGTACGCATTGTTGTCCAGAATCAGCGCATAA
TCGCGGGCCTCGTTGTTGCGCGAGTGGGCCTGATACTGGAACATGGCGTTCAGGTTCCTT
TCCACCGTCGAAATGGTGCCCGTAAAGTTGTCCATGTTGACGTTCAAATCTTCGATCTCT
CAGTAGGCCAACAG

consensusID : consensus_6138#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 553
fasta sequence

                              [TTGCTGTGCTGTAATGGAAGAAAGTGCTATTAACGTAGAAGGAATTGGAAGAACATTTTCTCGACCGGCTGTAATACAATCTGGCCGCCCTGGGGGGAAGGGGAATGTGTCTGTTGCGTGCGTTCGTTGGTCCGTGTGTGCTTGATTCCCGATGCCACTACACCAGGCGGCATATTTAACATTTTAAGTAACAATACTAGAAACAACAGCAGTCAGTTCCTGCGCCCCTCTTCTCCTGCTTCGCGCGTCTAAATGCGGCTCTTGCCACTGCCCGTCTTGATGTCGAACAGCTTCCGGACAAAGTACACCTGCACCGAGGTGGTGAACACGATCACCAGGATCTGCAGCACGGACCACTTCCAGATGTACGCATTGTTGTCCAGAATCAGCGCATAATCGCGGGCCTCGTTGTTGCGCGAGTGGGCCTGATACTGGACATGGCGTTCAGGTTCCGTTCCACCGTCGAAATGGTGCCCGTAAAGTTGTTCATGTTGACGTTCAAATCTTCGATCTCNGGGTGAACTTTTCCCCCTCGTTTAACCTCGGGGGATCT]

[-] EMBL AL932302             [TTGCTGTGCTGTAATGGAAGAAAGTGCTATTAACGTAGAAGGAATTGGAAGAACATTTTCTCGACCGGCTGTAATACAATCTGGCCGCCCTGGGGGGAAGGGGAATGTGTCTGTTGCGTGCGTTCGTTGGTCCGTGTGTGCTTGATTCCCGATGCCACTACACCAGGCGGCATATTTAACATTTTAAGTAACAATACTAGAAACAACAGCAGTCAGTTCCTGCGCCCCTCTTCTCCTGCTTCGCGCGTCTAAATGCGGCTCTTGCCACTGCCCGTCTTGATGTCGAACAGCTTCCGGACAAAGTACACCTGCACCGAGGTGGTGAACACGATCACCAGGATCTGCAGCACGGACCACTTCCAGATGTACGCATTGTTGTCCAGAATCAGCGCATAATCGCGGGCCTCGTTGTTGCGCGAGTGGGCCTGATACTGGACATGGCGTTCAGGTTCCGTTCCACCGTCGAAATGGTGCCCGTAAAGTTGTTCATGTTGACGTTCAAATCTTCGATCTCNGGGTGAACTTTTCCCCCTCGTTTAACCTCGGGGGATCT]




>consensus_6138#1
TTGCTGTGCTGTAATGGAAGAAAGTGCTATTAACGTAGAAGGAATTGGAAGAACATTTTC
TCGACCGGCTGTAATACAATCTGGCCGCCCTGGGGGGAAGGGGAATGTGTCTGTTGCGTG
CGTTCGTTGGTCCGTGTGTGCTTGATTCCCGATGCCACTACACCAGGCGGCATATTTAAC
ATTTTAAGTAACAATACTAGAAACAACAGCAGTCAGTTCCTGCGCCCCTCTTCTCCTGCT
TCGCGCGTCTAAATGCGGCTCTTGCCACTGCCCGTCTTGATGTCGAACAGCTTCCGGACA
AAGTACACCTGCACCGAGGTGGTGAACACGATCACCAGGATCTGCAGCACGGACCACTTC
CAGATGTACGCATTGTTGTCCAGAATCAGCGCATAATCGCGGGCCTCGTTGTTGCGCGAG
TGGGCCTGATACTGGACATGGCGTTCAGGTTCCGTTCCACCGTCGAAATGGTGCCCGTAA
AGTTGTTCATGTTGACGTTCAAATCTTCGATCTCNGGGTGAACTTTTCCCCCTCGTTTAA
CCTCGGGGGATCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6138#0      CAAAAATGATTTTTTATTGCTCTTGCACTGAACGTAACAAACAAAAAGAAGCTCCATTTC 60
consensus_6138#1      ------------------------------------------------------------
                                                                                  

consensus_6138#0      AAAATGACGGCCGACCAAAATTGACGACTTTTCACTTTTCTTGTACCGCTGACCCAAGCA 120
consensus_6138#1      ------------------------------------------------------------
                                                                                  

consensus_6138#0      GTTGAGCAATTTTTGCGCCCTCTGTTGCGATAGCAAATTTAAATGCGCCGTTTTTACGCC 180
consensus_6138#1      ------------------------------------------------------------
                                                                                  

consensus_6138#0      CCTTTTCTTTGATCGCTTTATGCTGAAGAAGATGCTAATGGAATGGATGAAAAGCATGGC 240
consensus_6138#1      ------------------------------------------------------------
                                                                                  

consensus_6138#0      TTGTTCGAGTGGAGTGCACAACACAAGCAATCGATTGTATTTTCACTTTCACAAACCCTG 300
consensus_6138#1      ------------------------------------------------------------
                                                                                  

consensus_6138#0      ACAGATAAGGATGCGAAATCAATCTTTTGCTGTGCTGTAATGGAAGAAAGTGCTATTAAC 360
consensus_6138#1      --------------------------TTGCTGTGCTGTAATGGAAGAAAGTGCTATTAAC 34
                                                **********************************

consensus_6138#0      GTAGAAGGAATTGGAAGAACATTTTCTCGACCGGCTGTAATACAATCTGGCCGCCCTGGG 420
consensus_6138#1      GTAGAAGGAATTGGAAGAACATTTTCTCGACCGGCTGTAATACAATCTGGCCGCCCTGGG 94
                      ************************************************************

consensus_6138#0      GGGGAAGGGGAATGTGTCTGTTGCGTGCGTTCGTTGGTCCGTGTGTGCGTGATTCCGGAT 480
consensus_6138#1      GGG-AAGGGGAATGTGTCTGTTGCGTGCGTTCGTTGGTCCGTGTGTGCTTGATTCCCGAT 153
                      *** ******************************************** ******* ***

consensus_6138#0      GCCTC-ACACCAGGCGGCATATTTAACATTTTAAGTAACAATACTAGAAA-AACAGCAGT 538
consensus_6138#1      GCCACTACACCAGGCGGCATATTTAACATTTTAAGTAACAATACTAGAAACAACAGCAGT 213
                      *** * ******************************************** *********

consensus_6138#0      CAGTTCCTGCGCTCCG-TTCTCCTGCTTCGCGCGTCTAAATGCGGCTCTTGCCACTGCCC 597
consensus_6138#1      CAGTTCCTGCGCCCCTCTTCTCCTGCTTCGCGCGTCTAAATGCGGCTCTTGCCACTGCCC 273
                      ************ **  *******************************************

consensus_6138#0      GTCTTGATGTCGAACAGCTTCCGGACAAAGTACACCTGCACCGAGGTGGTGAACACGATC 657
consensus_6138#1      GTCTTGATGTCGAACAGCTTCCGGACAAAGTACACCTGCACCGAGGTGGTGAACACGATC 333
                      ************************************************************

consensus_6138#0      ACCAGGATCTGCAGCACGGACCACTTCCAGATGTACGCATTGTTGTCCAGAATCAGCGCA 717
consensus_6138#1      ACCAGGATCTGCAGCACGGACCACTTCCAGATGTACGCATTGTTGTCCAGAATCAGCGCA 393
                      ************************************************************

consensus_6138#0      TAATCGCGGGCCTCGTTGTTGCGCGAGTGGGCCTGATACTGGAACATGGCGTTCAGGTTC 777
consensus_6138#1      TAATCGCGGGCCTCGTTGTTGCGCGAGTGGGCCTGATACTGGA-CATGGCGTTCAGGTTC 452
                      ******************************************* ****************

consensus_6138#0      CTTTCCACCGTCGAAATGGTGCCCGTAAAGTTGTCCATGTTGACGTTCAAATCTTCGATC 837
consensus_6138#1      CGTTCCACCGTCGAAATGGTGCCCGTAAAGTTGTTCATGTTGACGTTCAAATCTTCGATC 512
                      * ******************************** *************************

consensus_6138#0      TCTCAGTAGGCCAACAG------------------------ 854
consensus_6138#1      TCNGGGTGAACTTTTCCCCCTCGTTTAACCTCGGGGGATCT 553
                      **   **   *