These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_615#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 689 fasta sequence [CCGGGTAGAGGATGCAGAGCAAATCGCAGAATCGAATTTTCAAGCGTATTTTTCTTCCTTCTAACCTGCGCTCGCCTACCTCGCGTGCCGAGTCCAATCTTTCGTACCAGAGAGATACTAGTGAGGAGGTCACGGCGAGGAGAGAGGGAAAAAGCAAGGCGAGTAAAAAGAAAATGGAAGAAAAACACGATTGAAAAAACAATACAAACAAATTACACTCTAGAATACGTTTATATAGGAAAGCCCCTATCTCTCAACCCTTTCCCACACACACACGTACACACACACACGTGTGCGCGTATTACTATTGCAAGATGCAAACGATTGATATGCATCGCCGCAAACAAAAACAAAAAAACGAAACGAAAATCGATTTTCGAACGAACGCATCAACTACTTTTTAAGTATTTTATAAATATTTAAAATGAAGGCAAATCAACAACAACATCAAACGTGTGTGTGTGTGTGTTTGTGTGAATGTGGAAAAAGGGTGGGGAAGGGTGGAAAAGGCTCGGTTTAAAAACCAGTAATGGAAGAAAAGAGAAGAAGCAACAAAAACAACAAAAAAAACCCCCAAGTGATGTTTAGTGTGTGTAAGAGCAAAAGCTAAGCAAAAGCATAAAAAACGTAAGCAAACGCAAGAAAAGCTGAAATGCTATAAGTATATGAACAAAGCAACGGTGTAAAGG] [+] EMBL BM620756 [CCGGGTAGAGGATGCAGAGCAAATCGCAGAATCGAATTTTCAAGCGTATTTTTCTTCCTTCTAACCTGCGCTCGCCTACCTCGCGTGCCGAGTCCAATCTTTCGTACCAGAGAGATACTAGTGAGGAGGTCACGGCGAGGAGAGAGGGAAAAAGCAAGGCGAGTAAAAAGAAAATGGAAGAAAAACACGATTGAAAAAACAATACAAACAAATTACACTCTAGAATACGTTTATATAGGAAAGCCCCTATCTCTCAACCCTTTCCCACACACACACGTACACACACACACGTGTGCGCGTATTACTATTGCAAGATGCAAACGATTGATATGCATCGCCGCAAACAAAAACAAAAAAACGAAACGAAAATCGATTTTCGAACGAACGCATCAACTACTTTTTAAGTATTTTATAAATATTTAAAATGAAGGCAAATCAACAACAACATCAAACGTGTGTGTGTGTGTGTTTGTGTGAATGTGGAAAAAGGGTGGGGAAGGGTGGAAAAGGCTCGGTTTAAAAACCAGTAATGGAAGAAAAGAGAAGAAGCAACAAAAACAACAAAAAAAACCCCCAAGTGATGTTTAGTGTGTGTAAGAGCAAAAGCTAAGCAAAAGCATAAAAAACGTAAGCAAACGCAAGAAAAGCTGAAATGCTATAAGTATATGAACAAAGCAACGGTGTAAAGG] consensusID : consensus_615#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 642 fasta sequence [CAATTACAATTAGGCAGAGCAAAACAAAGCCGGTAGAGGATGCAGAGCAAATCGCAGAATCGAATTTTCAAGCGTATTTTTCTTCCTTCTAACCTCGCGTGCCGAGTCCAATCTTTCGTACCAGAGAGATACTAGTGAGGAGGTCACGGCGAGGAGAGAGAGAAAAAGCAGCGAGTAATAAGAAAAAGGGAAGAAAAACACGATTGAAAAAACAATACAAACAAATTACACTCTAGAATACGTTTATATAGGTAAGCCCCTATCTCTCAACCCTTTCCCAGACACACACACACACACGTACACACACCCACACGTGTGCGCGTATTACTATTGCAAGATGCAAACGATTGATATGCATCGCCGCAAACAAAAGCAAAAAAACGAAACGAAAATCGATTTTCGAACGAACGCATCAACTTCCCTTTTAAGTATTTTATAAATATTTAAAATGAAGGCAAACCAACAACAACATCAAACGTGTGTGTGTGTGTTTGTGTGAATGTGGAAAAAGGGTGGGGAAGGGTGGAAAAGGCTCGGTTTAAAAACCAGTAATGGAAGAAAAGAGAAGAAACCACCACCAAAAACCCCCCCCAAGTGATGTTTAGTGTGTGTAAGAGCAAAAGCTAAGCAAAAGCATAAACA] [+] EMBL BM646566 [CAATTACAATTAGGCAGAGCAAAACAAAGCCGGTAGAGGATGCAGAGCAAATCGCAGAATCGAATTTTCAAGCGTATTTTTCTTCCTTCTAACCTCGCGTGCCGAGTCCAATCTTTCGTACCAGAGAGATACTAGTGAGGAGGTCACGGCGAGGAGAGAGAGAAAAAGCAGCGAGTAATAAGAAAAAGGGAAGAAAAACACGATTGAAAAAACAATACAAACAAATTACACTCTAGAATACGTTTATATAGGTAAGCCCCTATCTCTCAACCCTTTCCCAGACACACACACACACACGTACACACACCCACACGTGTGCGCGTATTACTATTGCAAGATGCAAACGATTGATATGCATCGCCGCAAACAAAAGCAAAAAAACGAAACGAAAATCGATTTTCGAACGAACGCATCAACTTCCCTTTTAAGTATTTTATAAATATTTAAAATGAAGGCAAACCAACAACAACATCAAACGTGTGTGTGTGTGTTTGTGTGAATGTGGAAAAAGGGTGGGGAAGGGTGGAAAAGGCTCGGTTTAAAAACCAGTAATGGAAGAAAAGAGAAGAAACCACCACCAAAAACCCCCCCCAAGTGATGTTTAGTGTGTGTAAGAGCAAAAGCTAAGCAAAAGCATAAACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_615#0 ----------------------------CCGGGTAGAGGATGCAGAGCAAATCGCAGAAT 32 consensus_615#1 CAATTACAATTAGGCAGAGCAAAACAAAGCCGGTAGAGGATGCAGAGCAAATCGCAGAAT 60 * ***************************** consensus_615#0 CGAATTTTCAAGCGTATTTTTCTTCCTTCTAACCTGCGCTCGCCTACCTCGCGTGCCGAG 92 consensus_615#1 CGAATTTTCAAGCGTATTTTTCTTCCTTCTAACCT--------------CGCGTGCCGAG 106 *********************************** *********** consensus_615#0 TCCAATCTTTCGTACCAGAGAGATACTAGTGAGGAGGTCACGGCGAGGAGAGAGGGAAAA 152 consensus_615#1 TCCAATCTTTCGTACCAGAGAGATACTAGTGAGGAGGTCACGGCGAGGAGAGAGAGAAAA 166 ****************************************************** ***** consensus_615#0 AGCAAGGCGAGTAAAAAGAAAATGG-AAGAAAAACACGATTGAAAAAACAATACAAACAA 211 consensus_615#1 AGCA--GCGAGTAATAAGAAAAAGGGAAGAAAAACACGATTGAAAAAACAATACAAACAA 224 **** ******** ******* ** ********************************** consensus_615#0 ATTACACTCTAGAATACGTTTATATAGGAAAGCCCCTATCTCTCAACCCTTTCCCA---- 267 consensus_615#1 ATTACACTCTAGAATACGTTTATATAGGTAAGCCCCTATCTCTCAACCCTTTCCCAGACA 284 **************************** *************************** consensus_615#0 ----CACACACACGTACACACAC--ACACGTGTGCGCGTATTACTATTGCAAGATGCAAA 321 consensus_615#1 CACACACACACACGTACACACACCCACACGTGTGCGCGTATTACTATTGCAAGATGCAAA 344 ******************* *********************************** consensus_615#0 CGATTGATATGCATCGCCGCAAACAAAAACAAAAAAACGAAACGAAAATCGATTTTCGAA 381 consensus_615#1 CGATTGATATGCATCGCCGCAAACAAAAGCAAAAAAACGAAACGAAAATCGATTTTCGAA 404 **************************** ******************************* consensus_615#0 CGAACGCATCAACTACT-TTTTAAGTATTTTATAAATATTTAAAATGAAGGCAAATCAAC 440 consensus_615#1 CGAACGCATCAACTTCCCTTTTAAGTATTTTATAAATATTTAAAATGAAGGCAAACCAAC 464 ************** * ************************************* **** consensus_615#0 AACAACATCAAACGTGTGTGTGTGTGTGTTTGTGTGAATGTGGAAAAAGGGTGGGGAAGG 500 consensus_615#1 AACAACATCAAACGTGTGTGTGTGTGT--TTGTGTGAATGTGGAAAAAGGGTGGGGAAGG 522 *************************** ******************************* consensus_615#0 GTGGAAAAGGCTCGGTTTAAAAACCAGTAATGGAAGAAAAGAGAAGAAGCAACAAAAACA 560 consensus_615#1 GTGGAAAAGGCTCGGTTTAAAAACCAGTAATGGAAGAAAAGAGAAGAAACCAC-----CA 577 ************************************************ * ** ** consensus_615#0 ACAAAAAAAACCCCCAAGTGATGTTTAGTGTGTGTAAGAGCAAAAGCTAAGCAAAAGCAT 620 consensus_615#1 CCAAAAACCCCCCCCAAGTGATGTTTAGTGTGTGTAAGAGCAAAAGCTAAGCAAAAGCAT 637 ****** ************************************************** consensus_615#0 AAAAAACGTAAGCAAACGCAAGAAAAGCTGAAATGCTATAAGTATATGAACAAAGCAACG 680 consensus_615#1 AAACA------------------------------------------------------- 642 *** * consensus_615#0 GTGTAAAGG 689 consensus_615#1 --------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||