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Anopheles gambiae
cluster # 616 cluster # 616       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_616#0 length = 641 sequences # 1  
consensus_616#1 length = 292 sequences # 1  

consensusID : consensus_616#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 641
fasta sequence
                              [CCGCTAATTTACAAGATGCTAGAGAGTGTGTGACTATTTATAGTAAAAAATATTATTATTTTTATTGCGAAATAAATCAATATATTTTATCCAGCAGCCCCTGTTTGCGTACGCTGGGGATGTTTGCAAGATTTTCTTTTATTATTATTTATAGCCCTAAATACACATACACACACAAACACACTGAAGTGTCCAATCTGGGACGTGCAGTAGTAACAAGCAATAGTGAAAAATAGAAAGCGAGCGAGAGCAGATGAGTGAGATTCGGGCAAGAAGAAGCAGCAAGAGGCATTACTAACTGATTCCTTACTAATAATATTGTAGTTTTTTGCAAGCAAAAGCCCAAGCATCACAGCTGTGTGTACACAAGTGAGCTGCGGGGGGGCAACCGTCCCCCGCACCATAACTTCCAGCACAATATAAGTCACGAATTTAAAATGAGTGTGAACATGTTCAAAATAGCACTGGAAATGCATGGGTCAGAAATATGCAGTGGAGAAAGTTTGCAACGAACCACACACCACCGTCGTATTTGGAGCGGTTCATACAGAATAGAGAGAGTGAGAGAGAGAGAGAGTTTGGTTTGGGTTTTTGTACAATTTTCTTCTAAAAATCCGTTTCCGTTCCATTTTTTCAGTTCC]

[+] EMBL BM620753             [CCGCTAATTTACAAGATGCTAGAGAGTGTGTGACTATTTATAGTAAAAAATATTATTATTTTTATTGCGAAATAAATCAATATATTTTATCCAGCAGCCCCTGTTTGCGTACGCTGGGGATGTTTGCAAGATTTTCTTTTATTATTATTTATAGCCCTAAATACACATACACACACAAACACACTGAAGTGTCCAATCTGGGACGTGCAGTAGTAACAAGCAATAGTGAAAAATAGAAAGCGAGCGAGAGCAGATGAGTGAGATTCGGGCAAGAAGAAGCAGCAAGAGGCATTACTAACTGATTCCTTACTAATAATATTGTAGTTTTTTGCAAGCAAAAGCCCAAGCATCACAGCTGTGTGTACACAAGTGAGCTGCGGGGGGGCAACCGTCCCCCGCACCATAACTTCCAGCACAATATAAGTCACGAATTTAAAATGAGTGTGAACATGTTCAAAATAGCACTGGAAATGCATGGGTCAGAAATATGCAGTGGAGAAAGTTTGCAACGAACCACACACCACCGTCGTATTTGGAGCGGTTCATACAGAATAGAGAGAGTGAGAGAGAGAGAGAGTTTGGTTTGGGTTTTTGTACAATTTTCTTCTAAAAATCCGTTTCCGTTCCATTTTTTCAGTTCC]


>consensus_616#0 CCGCTAATTTACAAGATGCTAGAGAGTGTGTGACTATTTATAGTAAAAAATATTATTATT TTTATTGCGAAATAAATCAATATATTTTATCCAGCAGCCCCTGTTTGCGTACGCTGGGGA TGTTTGCAAGATTTTCTTTTATTATTATTTATAGCCCTAAATACACATACACACACAAAC ACACTGAAGTGTCCAATCTGGGACGTGCAGTAGTAACAAGCAATAGTGAAAAATAGAAAG CGAGCGAGAGCAGATGAGTGAGATTCGGGCAAGAAGAAGCAGCAAGAGGCATTACTAACT GATTCCTTACTAATAATATTGTAGTTTTTTGCAAGCAAAAGCCCAAGCATCACAGCTGTG TGTACACAAGTGAGCTGCGGGGGGGCAACCGTCCCCCGCACCATAACTTCCAGCACAATA TAAGTCACGAATTTAAAATGAGTGTGAACATGTTCAAAATAGCACTGGAAATGCATGGGT CAGAAATATGCAGTGGAGAAAGTTTGCAACGAACCACACACCACCGTCGTATTTGGAGCG GTTCATACAGAATAGAGAGAGTGAGAGAGAGAGAGAGTTTGGTTTGGGTTTTTGTACAAT TTTCTTCTAAAAATCCGTTTCCGTTCCATTTTTTCAGTTCC



consensusID : consensus_616#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 292
fasta sequence
                              [CCGCGGACGCGTGGGCGGACGCGTGGGCGCTGGGGATGTTTGCAAGATTTTCTTTTATTATTATTTATAGTCCTACATACACCCACAAACACACTGAAGTGTCCAATCTGGGACGTGCAGTAGTAACAAGCAATAGTGAAAAATAGAAAGCGAGCGAGAGCAGATGAGTGAGATTCGGGCAACAAGAAGCAGCAAGAGGCATTACTAACTGATTCCTTACTAATAATATTGTAGTTTTTTGCAAGCAAAAGCCCAAGTATCACAGCTGTGTGTACACAAGTGAGCTACGGGG]

[+] EMBL BM643907             [CCGCGGACGCGTGGGCGGACGCGTGGGCGCTGGGGATGTTTGCAAGATTTTCTTTTATTATTATTTATAGTCCTACATACACCCACAAACACACTGAAGTGTCCAATCTGGGACGTGCAGTAGTAACAAGCAATAGTGAAAAATAGAAAGCGAGCGAGAGCAGATGAGTGAGATTCGGGCAACAAGAAGCAGCAAGAGGCATTACTAACTGATTCCTTACTAATAATATTGTAGTTTTTTGCAAGCAAAAGCCCAAGTATCACAGCTGTGTGTACACAAGTGAGCTACGGGG]


>consensus_616#1 CCGCGGACGCGTGGGCGGACGCGTGGGCGCTGGGGATGTTTGCAAGATTTTCTTTTATTA TTATTTATAGTCCTACATACACCCACAAACACACTGAAGTGTCCAATCTGGGACGTGCAG TAGTAACAAGCAATAGTGAAAAATAGAAAGCGAGCGAGAGCAGATGAGTGAGATTCGGGC AACAAGAAGCAGCAAGAGGCATTACTAACTGATTCCTTACTAATAATATTGTAGTTTTTT GCAAGCAAAAGCCCAAGTATCACAGCTGTGTGTACACAAGTGAGCTACGGGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_616#0      CCGCTAATTTACAAGATGCTAGAGAGTGTGTGACTATTTATAGTAAAAAATATTATTATT 60
consensus_616#1      ------------------------------------------------------------
                                                                                 

consensus_616#0      TTTATTGCGAAATAAATCAATATATTTTATCCAGCAGCCCCTGTTTGCGTACGCTGGGGA 120
consensus_616#1      ------------------------CCGCGGACGCGTGGGCGGACGCGTGGGCGCTGGGGA 36
                                                    *    *  *      * *  *********

consensus_616#0      TGTTTGCAAGATTTTCTTTTATTATTATTTATAGCCCTAAATACACATACACACACAAAC 180
consensus_616#1      TGTTTGCAAGATTTTCTTTTATTATTATTTATAGTCCTA------CATACACCCACAAAC 90
                     ********************************** ****      ******* *******

consensus_616#0      ACACTGAAGTGTCCAATCTGGGACGTGCAGTAGTAACAAGCAATAGTGAAAAATAGAAAG 240
consensus_616#1      ACACTGAAGTGTCCAATCTGGGACGTGCAGTAGTAACAAGCAATAGTGAAAAATAGAAAG 150
                     ************************************************************

consensus_616#0      CGAGCGAGAGCAGATGAGTGAGATTCGGGCAAGAAGAAGCAGCAAGAGGCATTACTAACT 300
consensus_616#1      CGAGCGAGAGCAGATGAGTGAGATTCGGGCAACAAGAAGCAGCAAGAGGCATTACTAACT 210
                     ******************************** ***************************

consensus_616#0      GATTCCTTACTAATAATATTGTAGTTTTTTGCAAGCAAAAGCCCAAGCATCACAGCTGTG 360
consensus_616#1      GATTCCTTACTAATAATATTGTAGTTTTTTGCAAGCAAAAGCCCAAGTATCACAGCTGTG 270
                     *********************************************** ************

consensus_616#0      TGTACACAAGTGAGCTGCGGGGGGGCAACCGTCCCCCGCACCATAACTTCCAGCACAATA 420
consensus_616#1      TGTACACAAGTGAGCTACGGGG-------------------------------------- 292
                     **************** *****                                      

consensus_616#0      TAAGTCACGAATTTAAAATGAGTGTGAACATGTTCAAAATAGCACTGGAAATGCATGGGT 480
consensus_616#1      ------------------------------------------------------------
                                                                                 

consensus_616#0      CAGAAATATGCAGTGGAGAAAGTTTGCAACGAACCACACACCACCGTCGTATTTGGAGCG 540
consensus_616#1      ------------------------------------------------------------
                                                                                 

consensus_616#0      GTTCATACAGAATAGAGAGAGTGAGAGAGAGAGAGAGTTTGGTTTGGGTTTTTGTACAAT 600
consensus_616#1      ------------------------------------------------------------
                                                                                 

consensus_616#0      TTTCTTCTAAAAATCCGTTTCCGTTCCATTTTTTCAGTTCC 641
consensus_616#1      -----------------------------------------
                                                              




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)