These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6164#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1404 fasta sequence [CCGGCCCCATGTCGATCGGCAGGACGAGCCGGACGACGATACGCTCATGTCGGCCGATGAGCTGTTGACGGCGGCAAGCGTCCCGGGTGCAGCGAGCGAAATAACGATGCAACCGGTGGGTGGGGTGGTGGCGGTCGATGCCATCGGTCTGAGCGGTATCGAGCCAAGCTTGGCGCTACCCATCGGGCCTGATTTGGCCGGCATTAATACACCCTTTCTAGTCAATAACATTGCGCCCGGGCTGCCGCTAGCGAACGAGATACGGGAGATCCGTGCCGGGTGTAGAAGAATTCGCGAAGAACGGCCGGGGTTTTCCATCATATCGAGCGTGAATGAGCTGCTATCAAGGTTTCTTCAGGATGATCAGCAGCGCGAGCTGA-CCCTGCACGATGTGGACAAAGCGGAGCACGACAAGCTGCAGGATCTGTGCAAGCTCTACTCGCTGAATGCACAGCAGCTGAGCGAAAATGGCAGTGTGGTGATGCTGAGCAAAACCAGCAATACGATGCAATCGGTACGGATCGATCAGTCCAACTTGCCGAAACGGCTTGGAGATTTCAAACGGCGCTGCTACGGCAATGCGGAAGCGCTACAATTTCACGACGGTGCTACCAGCTAAACAATGACTATGGCTCCCATCACCGATACGGCACCGAACGGAGCTTTCGAGCGTTAG-AAACCGAGTTTGGA--CCGGGTTTTTGTGCCGGCGTGTTTACAAAACTGTAAGCGACAGCTTTGAAAATTGAAACTGTAAAGATAGCGAGCAAATATACAAGTGAATTAGTGTAGAATTAGGCGAAGCGCTTTTAGCTTTTGTTCAGTCTCACGCGCGCACAACACTGTTGGGAGGCTCGTTGCGTGTAGAGTTAGCATAAGCGAGTTAACAAACGACGACACAACACACCGACGAACAACAGGATTTGATTGCATCATGTCCTATGGACGAAGAAGAGGATAGAAGATGGAATAGACAAAAAAAAAACACCCGAGACGGACGAAGGTAGTTCCACTGGAGAAAATAACCACTATGTA-CAGTTAGCATGTAAGAGAGTTACGTGTAAGTAAGGTGGGTGTGGTGTCTCGAAGCTAACCACACAGTTGCGCACTTTGCCTGCGGCCATTCGCTTCACAAACGCTTGCCAGAAGCCGAGAAAGGAGGAGTTAGGAGTTTGTTCCCTTTGCGCAACAACAACAAACAAGCAAACAAACAAAACAAAAAACCTTCGCACCGTTACTAAACACAGAACGCGCTAGAGTTTTGTGCCGTTGTTAGGTTAGCAAGTTTTTAATTCACGTTAGCGGAAAGGTTTTGCTACTTTTAATGCGCAAGATTCTCTGTACAGTTGCAACGGCAGCAATGGACAAGATGCTAAGCAGCGCGAAAATGAGGAAAATTAATAAACC] [+] EMBL BM585396 [CCGGCCCCATGTCGATCGGCAGGACGAGCCGGACGACGATACGCTCATGTCGGCCGATGAGCTGTTGACGGCGGCAAGCGTCCCGGGTGCAGCGAGCGAAATAACGATGCAACCGGTGGGTGGGGTGGTGGCGGTCGATGCCATCGGTCTGAGCGGTATCGAGCCAAGCTTGGCGCTACCCATCGGGCCTGATTTGGCCGGCATTAATACACCCTTTCTAGTCAATAACATTGCGCCCGGGCTGCCGCTAGCGAACGAGATACGGGAGATCCGTGCCGGGTGTAGAAGAATTCGCGAAGAACGGCCGGGGTTTTCCATCATATCGAGCGTGAATGAGCTGCTATCAAGGTTTCTTCAGGATGATCAGCAGCGCGAGCTGA CCCTGCACGATGTGGACAAAGCGGAGCACGACAAGCTGCAGGATCTGTGCAAGCTCTACTCGCTGAATGCACAGCAGCTGAGCGAAAATGGCAGTGTGGTGATGCTGAGCAAAACCAGCAATACGATGCAATCGGTACGGATCGATCAGTCCAACTTGCCGAAACGGCTTGGAGATTTCAAACGGCGCTGCTACGGCAATGCGGAAGCGCTACAATTTCACGACGGTGCTACCAGCTAAACAATGACTATGGCTCCCATCACCGATACGGCACCGAACGGAGCTTTCGAGCGTTAGAAAACCGAGTTTGGAACCCGGGTT ] [+] EMBL BM593002 [ ccgGCTTGGCGCTACCCATCGGGCCTGATTTGGCCGGCATTAATACACCCTTTCTAGTCAATAACATTGCGCCCGGGCTGCCGGTGGGGAACGAGATACGGGAGATCCGTGCCGGGTGTAGAAGAATTCGCGAAGAACGGCCGGGGTTTTCCATCATATCGAGCGTGAATGAGCTGCTATCAAGGTTTCTTCAGGATGATCAGCAGCGCGAGCTGA CCCTGCACGATGTGGACAAAGCGGAGCACGACAAGCTGCAGGATCTGTGCAAGCTCTACTCGCTGAATGCACAGCAGCTGAGCGAAAATGGCAGTGTGGTGATGCTGAGCAAAACCAGCAATACGATGCAATCGGTACGGATCGATCAGTCCAACTTGCCGAAACGGCTTGGAGATTTCAAACGGCGCTGCTACGGCAATGCGGAAGCGCTACAATTTCACGACGGTGCTACCAGCTAAACAATGACTATGGCTCCCATCACCGATACGGCACCGAACGGAGCTTTCGAGCGTTAG AAACCGAGTTTGGA CCGGGTTTTTGTGCCGGCGTGTTTACAAAACTGTAAACGACAGCTTTGAAAATTGAAACTGTAAAGATAGCGAGCAAATATACAAGTGAATTAGTGTAGAATTAGGCGAAGCGCTTCTAGCTTTTGTTCAGCCCCACGCGCGCACAACACTGT ] [+] EMBL CNS09N9W [ TAACATTGCGCCCGGGCTGCCGCTAGCGAACGAGATACGGGAGATCCGTGCCGGGTGTAGAAGAATTCGCGAAGAACGGCCGGGGTTTTCCATCATATCGAGCGTGAATGAGCTGCTATCAAGGTTTCTTCAGGATGATCAGCAGCGCGAGCTGATCCCTGCACGATGTGGACAAAGCGGA CACGACAAGCTGCAGGATCTGTGCAAGCTCTACTCGCTGAATGCACAGCAGCTAAGCGAAAATGGCAGTGTGGTGATGCTGAGCAAAACCAGCAACACGATGCAATCGGTACGGATCGATCAGTCCAACTTACCGAAACGGCTTGGAGATTTCAAACGGCGCTGCTACGGCAATGCGGAAGCGCTACAATTTCACGACGGTGCTACCAGCTAAACAATGACTATGGCTACCATCACCGATACGACACCGAACGGAGCTTTCGAGCGTTAG AAACCGAGTTTGGA CCGGGTTTTTGTGCCGGCGTGTTTACAAAACTGTAAGCGACAGCTTTGAAAATTGAAACTGTAAAGATAGCGAGCAAATATACAAGTGAATTAGTGTAGAATTAGGCGAA CGCTTTTAGCTTTTGTTCAGTCTCACGCGCGCACAACACTGTTGGGAGGCTCGTTGCGTGTAGAGTTAGCATAAGCGAGTTAACAAACGACGACACAACACACCGACGAACAACAGGATTTGATTGCATCATGTCCTATGGACGAAGAAGAGGATAGAAGATGGAATAGACAAAAAAAAAACACCCGAGACGGACGAAGGTAGTTCCACTGGAGAAAATAACCACTATGTA CAGTTAGCATGTAAGAGAGTTACGTGTAAGTAAGGTGGGTGTGGTGTCTCGAAGCTAACCACACAGTTGCGCACTTTGCCTGCGGCCATTCGCTTCACAAACGCTTGCCAGAAGCCGAGAAAGGAGGAGTTAGGAGTTTGTTCCCTTTGCG ] [-] EMBL CNS09N9X [ TCGGTACGGATCGATCAGTCCAACTTACCGAAACGGCTTGGAGATTTCAAACGGGGCTGCTACGGCAATGCGGAAGCGCTACAATTTCACGACGGTGCTACCAGCTAAACAATGACTATGGCTACCATCACCGATACGACACCGAACGGGGCTTTCGAGCGTTAG AAACCGAGTTTGGA CCGGGTTTTTGTGCCGGCGTGTTTACAAAACTGTAAGCCACAGCTTTGAAAATTGAAACTGTAAAGATAGCGAGCAAATATACAAGTGAATTAGTGTAGAATTAGGCAAAGCGCTTTTAGCTTTTGTTCAATTTAACGGGCGCACAAAACTGTTGGGAGGCTCGTTGCGTGTAGAGTTAGCATAAGCGAGTTAACAAACGACGACACAACACACCGACGAACAACAGGATTTTATTGCATCATGTCCTATGGACGAAGAAGAGGATAGAAGATGGGATAGACAAAAAAAAAACACCCGAGACGGACGAAGGTAGTTCCACTGGAGAAAATAACCACTATGTATCAGTTAGCATGTAAGAGAGTAACGTGTAAGTAAGGTGGGTGTGGTGTCTCGAAGCTAACCACACAGTTGCGCACTTT CTGCGGCCATTCGCTTCACAAACGCTTGCCAGAAGCCGAGAAAGGAGGAGTTAGGAGTTTGTTCCCTTTGCGCAACAACAACAAACAAGCAAACAAACAAAACAAAAAACCTTCGCACCGTTACTAAACACAGAACGCGCTAGAGTTTTGTGCCGTTGTTAGGTTAGCAAGTTTTTAATTCACGTTAGCGGAAAGGTTTTGCTACTTTTAATGCGCAAGATTCTCTGTACAGTTGCAACGGCAGCAATGGACAAGATGCTAAGCAGCGCGAAAATGAGGAAAATTAATAAACC] consensusID : consensus_6164#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 301 fasta sequence [AGAGACCCGGGTATCTNAAGCCACAGCTTNTGCGCTAACCATCGAGGCCCTGATATTTGGCGCCGGGCNATTTAATTANCACACCCCTTTTCTAGTCAATAACATTGCGCCCGGGCTGGCGCTAGCGAACGAGATACGGGAGATCCGTGCCGGGGTGTAGAAGAATTCGCGAAGAACGGCCGGGGTTTTCCATCCATATCGAGCGTGAAATTGAGCTGCTNATCCAAAGGGGTATNNCTTTCCAGGGGAATGCATCAGCAGANCTGCGANGCTGACCCTGGCACGATGTGGACAAAGCGGA] [+] EMBL AL933699 [AGAGACCCGGGTATCTNAAGCCACAGCTTNTGCGCTAACCATCGAGGCCCTGATATTTGGCGCCGGGCNATTTAATTANCACACCCCTTTTCTAGTCAATAACATTGCGCCCGGGCTGGCGCTAGCGAACGAGATACGGGAGATCCGTGCCGGGGTGTAGAAGAATTCGCGAAGAACGGCCGGGGTTTTCCATCCATATCGAGCGTGAAATTGAGCTGCTNATCCAAAGGGGTATNNCTTTCCAGGGGAATGCATCAGCAGANCTGCGANGCTGACCCTGGCACGATGTGGACAAAGCGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6164#0 CCGGCCCCATGTCGATCGGCAGGACGAGCCGGACGACGATACGCTCATGTCGGCCGATGA 60 consensus_6164#1 ------------------------------------------------------------ consensus_6164#0 GCTGTTGACGGCGGCAAGCGTCCCGGGTGCAGCGAGCGAAATAACGATGCAACCGGTGGG 120 consensus_6164#1 ------------------------------------------------------------ consensus_6164#0 TGGGGTGGTGGCGGTCGATGCCATCGGTCTGAGCGGTATCGAGCCAAGCT-TGGCGCTAC 179 consensus_6164#1 AGAGACCCGGGTATCTNAAGCCA-CAGCTTNTGCGCTAACCATCGAGGCCCTGATATTTG 59 * * ** * **** * * * *** ** * * * * ** ** * consensus_6164#0 CCATCGGGCCTGATTTGGCCGGCATTAATACACCCTTTCTAGTCAATAACATTGCGCCCG 239 consensus_6164#1 GCGCCGGGCN--ATTTAATTANCAC----ACCCCTTTTCTAGTCAATAACATTGCGCCCG 113 * ***** **** ** ** ** ************************* consensus_6164#0 GGCTGCCGCTAGCGAACGAGATACGGGAGATCCGTGCCGGG-TGTAGAAGAATTCGCGAA 298 consensus_6164#1 GGCTGGCGCTAGCGAACGAGATACGGGAGATCCGTGCCGGGGTGTAGAAGAATTCGCGAA 173 ***** *********************************** ****************** consensus_6164#0 GAACGGCCGGGGTTTTCCATC-ATATCGAGCGTGAA--TGAGCTGCTA--TCAAGG---- 349 consensus_6164#1 GAACGGCCGGGGTTTTCCATCCATATCGAGCGTGAAATTGAGCTGCTNATCCAAAGGGGT 233 ********************* ************** ********* *** * consensus_6164#0 -TTTCTTC-----AGGATG-ATCAGCAGCGC----GAGCTGACCCTG-CACGATGTGGAC 397 consensus_6164#1 ATNNCTTTCCAGGGGAATGCATCAGCAGANCTGCGANGCTGACCCTGGCACGATGTGGAC 293 * *** * *** ******** * ********** ************ consensus_6164#0 AAAGCGGAGCACGACAAGCTGCAGGATCTGTGCAAGCTCTACTCGCTGAATGCACAGCAG 457 consensus_6164#1 AAAGCGGA---------------------------------------------------- 301 ******** consensus_6164#0 CTGAGCGAAAATGGCAGTGTGGTGATGCTGAGCAAAACCAGCAATACGATGCAATCGGTA 517 consensus_6164#1 ------------------------------------------------------------ consensus_6164#0 CGGATCGATCAGTCCAACTTGCCGAAACGGCTTGGAGATTTCAAACGGCGCTGCTACGGC 577 consensus_6164#1 ------------------------------------------------------------ consensus_6164#0 AATGCGGAAGCGCTACAATTTCACGACGGTGCTACCAGCTAAACAATGACTATGGCTCCC 637 consensus_6164#1 ------------------------------------------------------------ consensus_6164#0 ATCACCGATACGGCACCGAACGGAGCTTTCGAGCGTTAGAAACCGAGTTTGGACCGGGTT 697 consensus_6164#1 ------------------------------------------------------------ consensus_6164#0 TTTGTGCCGGCGTGTTTACAAAACTGTAAGCGACAGCTTTGAAAATTGAAACTGTAAAGA 757 consensus_6164#1 ------------------------------------------------------------ consensus_6164#0 TAGCGAGCAAATATACAAGTGAATTAGTGTAGAATTAGGCGAAGCGCTTTTAGCTTTTGT 817 consensus_6164#1 ------------------------------------------------------------ consensus_6164#0 TCAGTCTCACGCGCGCACAACACTGTTGGGAGGCTCGTTGCGTGTAGAGTTAGCATAAGC 877 consensus_6164#1 ------------------------------------------------------------ consensus_6164#0 GAGTTAACAAACGACGACACAACACACCGACGAACAACAGGATTTGATTGCATCATGTCC 937 consensus_6164#1 ------------------------------------------------------------ consensus_6164#0 TATGGACGAAGAAGAGGATAGAAGATGGAATAGACAAAAAAAAAACACCCGAGACGGACG 997 consensus_6164#1 ------------------------------------------------------------ consensus_6164#0 AAGGTAGTTCCACTGGAGAAAATAACCACTATGTACAGTTAGCATGTAAGAGAGTTACGT 1057 consensus_6164#1 ------------------------------------------------------------ consensus_6164#0 GTAAGTAAGGTGGGTGTGGTGTCTCGAAGCTAACCACACAGTTGCGCACTTTGCCTGCGG 1117 consensus_6164#1 ------------------------------------------------------------ consensus_6164#0 CCATTCGCTTCACAAACGCTTGCCAGAAGCCGAGAAAGGAGGAGTTAGGAGTTTGTTCCC 1177 consensus_6164#1 ------------------------------------------------------------ consensus_6164#0 TTTGCGCAACAACAACAAACAAGCAAACAAACAAAACAAAAAACCTTCGCACCGTTACTA 1237 consensus_6164#1 ------------------------------------------------------------ consensus_6164#0 AACACAGAACGCGCTAGAGTTTTGTGCCGTTGTTAGGTTAGCAAGTTTTTAATTCACGTT 1297 consensus_6164#1 ------------------------------------------------------------ consensus_6164#0 AGCGGAAAGGTTTTGCTACTTTTAATGCGCAAGATTCTCTGTACAGTTGCAACGGCAGCA 1357 consensus_6164#1 ------------------------------------------------------------ consensus_6164#0 ATGGACAAGATGCTAAGCAGCGCGAAAATGAGGAAAATTAATAAACC 1404 consensus_6164#1 ----------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||