These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6166#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1590 fasta sequence [CCGCAGACGCACGTGTCCGGAAAGTCATGAGCCTGCCGGTATATTCTTAAGCTTTCTCTGTTGCCTGTCTGCCGCAGGTGCTGCGCGATGATTAGGCTGTGTTTTCTCATAGTTTTGCGCCTACCGAGCTGATCTTTCGCAGCAACATCAAACACAGACACTCGTTAGTACGGTAACCGAATGAGATTGATGCCATTTTGGTACACCCTGCACCCCGTAGACTGTTGTTAGCTCTTGGTGTTTCGCTTGGGAAAAAAAAACAGGACGACGGCACTCTCGCGAAGAATTCAATGCAAAGACTTTACCTGAGGGGCTACGCATGGGAGTGGCAGTGACGGAACGTACGATTGGTGATGGTTAACGATAGAAACGATGCAAACGGAAGAGAAATAGGCCGGCAAGAATGGCGGTACCGGTGGTAGTGGAAATGGACGTAGTGGTAGCACGTAGGACGTGTGGGGATAAACGGCACCAGCAAAAGCAAAAAGCAAAAAGCTGTTACCATTCAAATAGTGGTGGCGAATGGTGTAGAAATGAGAGGGCGGGAGGATGGAATCAAAAGTAAGGAAAAGGAAAAGATGAAAAAAAAAACACAAACACACACATACATACACACATACACGAGAGCAAACAATTAGTAGTCTGATTCAATTGTAGTGATAGTAACATTTAGTAAGTGACACATGGCGATAAATATGTAATTTGATAAGGTTGATGAATGGTGAAGCAGAACGGAAAAGAGAGATAGAAAGAGAGAGCAAGAAAGCAAACAAAACAAAACAAAGCTACCAAGAGCAGATAAGCTAAAAAGCAGAAAAGAAACAAACAAACAAAAACAAACTAACTAACAAACAAACATAAGTATGGAAAATGATTAATGAAAGGCAAGCTTAAAAAGAAAAAGCGTATTCAGCAGGGTGAAAAAGGAAAGGAACAAGGAAATGGTTTTTTGAGGTGAAAATGTGAATGTGAAAAACAAATGACCGAAATCGATGCTGAGCTGTGGCCGCGTGTTGCTGGAGCGTGTTTAAATGCGGGGAAACAAAACCCCGATGATATGGTATGCCGGAAAGCTCAGTAACGCGTCAAGCACAGCAAGTGCTGTAGTTTAAACTTTTGCGCACACCTGAGTTAATCCCTCCGGAAAAAATACGTAGTTGCCCGTTTTGTTGTTGAAAAAAGCTAAAAATTAACGTGACGTTGTAAAGGAAATGCAAATCCCAGGATCGACAAGTGATTCAAAATTAACGGCTATTGGAAAAACACGTGAATTCACAAAATTTAACTATTGACCTGATCTGAGCCGTGTAGTTGTCGTTGTTGTTATCAGTACATACAGTACACATACATTCAGTCAGTAGAACCATGCTACTATATCCAAAGCATCAAGTTACCAAATGATTGCGTTACACGTTTCTATAGTGAAGATGTTTTTTTTCGTTTTGTCTTCTTTCGGTCTCACATGCTACTCATTAAATTATTCTCACCCTTTCTTTGCGTCTCACCAAATCTCTCTCTCGCCCGCTGAGCACCAGTGAGCAGAGCGTGAGCAAAGCGGGCAGGGGTTGTTCTGTTTGCGACTGGTTGCTG] [+] EMBL BM636533 [CCGCAGACGCACGTGTCCGGAAAGTCATGAGCCTGCCGGTATATTCTTAAGCTTTCTCTGTTGCCTGTCTGCCGCAGGTGCTGCGCGATGATTAGGCTGTGTTTTCTCATAGTTTTGCGCCTACCGAGCTGATCTTTCGCAGCAACATCAAACACAGACACTCGTTAGTACGGTAACCGAATGAGATTGATGCCATTTTGGTACACCCTGCACCCCGTAGACTGTTGTTAGCTCTTGGTGTTTCGCTTGGGAAAAAAAAACAGGACGACGGCACTCTCGCGAAGAATTCAATGCAAAGACTTTACCTGAGGGGCTACGCATGGGAGTGGCAGTGACGGAACGTACGATTGGTGATGGTTAACGATAGAAACGATGCAAACGGAAGAGAAATAGGCCGGCAAGAATGGCGGTACCGGTGGTAGTGGAAATGGACGTAGTGGTAGCACGTAGGACGTGTGGGGATAAACGGCACCAGCAAAAGCAAAAAGCAAAAAGCTGTTACCATTCAAATAGTGGTGGCGAATGGTGTAGAAATGAGAGGGCGGGAGGATGGAA ] [+] EMBL BM656137 [ ccgcaAAAAAGC AAAAGCTGTTACCATTCAAATAGTGGTGGCGTATGGCGTAGAAATGAGAGGGCGGGAGGATGGAATCAAAAGTAAGGAAAAGGAAAAGATGAAAAAAAAAACACAAACACACACATACATACACACATACACGAGAGCAAACAATTAGTAGTCTGATTCAATTGTAGTGATAGTAACATTTAGTAAGTGACACATGGCGATAAATATGTAATTTGATAAGGTTGATGAATGGTGAAGCAGAACGGAAAAGAGAGATAGAAAGAGAGAGCAAGAAAGCAAACAAAACAAAACAAAGCTACCAAGAGCAGATAAGCTAAAAAGCAGAAAAGAAACAAACAAACAAAAACAAACTAACTAACAAACAAACATAAGTATGGAAAATGATTAATGAAAGGCAAGCTTAAAAAGAAAAAGCGTATTCAGCAGGGTGAAAAAGGAAAGGAACAAGGAAATGGTTTTTTGAGGTGAAAATGTGAATGTGAAAAACAAATGACCGAAATCGATGCTGAGCTGTGGCCGCGTGTTGCTGGAGCGTGTTTAAATGCGGGGAAACAAAACCCCGATGATATGGTATGCCGGAAAGCTCAGTAACGCGTCAAGCACAGCAAGTGCTGTAGTTTAAACTTTTGCGCACACCTGAGTTAATCCCTCCGGAAA ] [+] EMBL BM639760 [ CCG AATCGATGCTGAGCTGTGGCCGCGTGTTGCTGGAGCGTGTTTAAATGCGGGGAAACAAAAACCCGATGATATGGTAGGCCGGAAAGCTCAGTAACGCGTCAAGCACAGCAAGTGCTGTAGTTTAAACTTTTGCGCACACCTGAGTTAATCCCTCCGGAAAAAATACGTAGTTGCCCGTTTTGTTGTTGAAAAAAGCTAAAAATTAACGTGACGTTGTAAAGGAAATGCAAATCCCAGGATCGACAAGTGATTCAAAATTAACGGCTATTGGAAAAACACGTGAATTCACAAAATTTAACTATTGACCTGATCTGAGCCGTGTAGTTGTCGTTGTTGTTATCAGTACATACAGTACACATACATTCAGTCAGTAGAACCATGCTACTATATCCAAAGCATCAAGTTACCAAATGATTGCGTTACACGTTTCTATAGTGAAGATGTTTTTTTTCGTTTTGTCTTCTTTCGGTCTCACATGCTACTCATTAAATTATTCTCACCCTTTCTTTGCGTCTCACCAAATCTCTCTCTCGCCCGCTGAGCACCAGTGAGCAGAGCGTGAGCAAAGCGGGCAGGGGTTGTTCTGTTTGCGACTGGTTGCTG] consensusID : consensus_6166#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 731 fasta sequence [GTGAAATAGAGGAGGATATTATCTTTACATGTTGAAATAATGACAAATTAGCATGCATATTCAATTAGGTGCGCGGGACAAGACAACCCCCCAATTCTACGGCCTTATGCCGGCCTTTGTACATACGTTCGAACGTTACGAAACAAAACAAAACAAAAATATTAACAAAAAACCCCAACACACATACACATAAAAGAAAAACCCCCTCCCCTCGTAGCCTAAAGCAAGATGCAGTAGCACGCAGTTTAATGCAAACTACGA----AGAGAGAGAGAGAGATGCTGTTTGTTTAGTAGAATTCATCGAGTACGCGAGTTTTATCAG-AAAAAAAGATATGAAAGCGAAACTTCACACACACGTGTCCGGAAAGTCATGAGTCTGCCGGTATGCCCCTTAGCTTTCTCTGTTGCCTGTCTGCAACAGGTGCTGCGCGATGATTAGGCTATGTTTTCTCATAGCTTTGCGCCTACCGAGCTGATCTTTCGCAGGAACATCAAACACAGACACTCGTTAGTACGGTAACCGAATGAG-ATTGATGCCATTTTGGTACACCCTGCACCCCGTAGACTGTTGTTAGCTCTTGGTGTTTCGCTTGGCAAAACAGGACGACGGCACTCTCGCGAAGAATTCAATTCAAAGGCTACGCATGGGAGCGCGAAGACGGAACGAACGATTGGTGATGGTTAACGATAGAAACGATGCAACGAAAGAGCGGTTCTGGNGGTAGTGGAAAT] [+] EMBL BX620176 [GTGAAATAGAGGAGGATATTATCTTTACATGTTGAAATAATGACAAATTAGCATGCATATTCAATTAGGTGCGCGGGACAAGACAACCCCCCAATTCTACGGCCTTATGCCGGCCTTTGTACATACGTTCGAACGTTACGAAACAAAACAAAACAAAAATATTAACAAAAAACCCCAACACACATACACATAAAAGAAAAACCCCCTCCCCTCGTAGCCTAAAGCAAGATGCAGTAGCACGCAGTTTAATGCAAACTACGA AGAGAGAGAGAGAGATGCTGTTTGTTTAGTAGAATTCATCGAGTACGCGAGTTTTATCAG AAAAAAAGATATGAAAGCGAAACTTCACACACACGTGTCCGGAAAGTCATGAGTCTGCCGGTATGCCCCTTAGCTTTCTCTGTTGCCTGTCTGCAACAGGTGCTGCGCGATGATTAGGCTATGTTTTCTCATAGCTTTGCGCCTACCGAGCTGATCTTTCGCAGGAACATCAAACACAGACACTCGTTAGTACGGTAACCGAATGAG ATTGATGCCATTTTGGTACACCCTGCACCCCGTAGACTGTTGTTAGCTCTTGGTGTTTCGCTTGGCAAAACAGGACGACGGCACTCTCGCGAAGAATTCAATTCAAAGGCTACGCATGGGAGCGCGAAGACGGAACGAACGATTGGTGATGGTTAACGATAGAAACGATGCAACGAAAGAGCGGTTCTGGNGGTAGTGGAAAT] [+] EMBL AL933555 [ GGAGGCTATTATCTTTACACGTTGAAATAATGACAAATTA CATGCATATTCAATTA GTGCGCGGGACAAGACAACCCCCCAATTCTACGGCCTTATGCCGGCCTTTGTACATACGTTCGAACGTTACGAAACAAAACAAAACAAAAATATTAACAAAAAACCCCAACACACATACACATAAAAGAAAACCCCACTCCCCTCGTAGCCTAAAGCAAGATGCAGTAGCACGCAGTTTAATGCAAACTACGAAGAGAGAGAGAGAGAGAGATGCTGTTTGTTTAGTAGAATTCATCGAGTACGCGAGTTTTATCAGAAAAAAAAGATATGAAAGCGAAACTTCACACACACGTGTCCGGAAAGTCATGAGTCTGCCGGTATGCCCCTTAGCTTTCTCTGTTGCCTGTCTGCCGCAGGTGCTGCGCGATGATTAGGCTGTGTTTTCTCATAGCTTTGCGCCTATCGAGCTGATCTTTCGCAGGAACATCAAACACAGACACTCGTTAGTACGGTAACCGAATGAGCATTGATGCCA TTTGGTACACCCTGCACCCCGTACACTGTT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6166#0 CCGCAGACGCACGTGTCCGGAAAGTCATGAGCCTGCCGGTATATTCTTAAGCTTTCTCTG 60 consensus_6166#1 ------------------------------------------------------------ consensus_6166#0 TTGCCTGTCTGCCGCAGGTGCTGCGCGATGATTAGGCTGTGTTTTCTCATAGTTTTGCGC 120 consensus_6166#1 ------------------------------------------------------------ consensus_6166#0 CTACCGAGCTGATCTTTCGCAGCAACATCAAACACAGACACTCGTTAGTACGGTAACCGA 180 consensus_6166#1 ------------------------------------------------------------ consensus_6166#0 ATGAGATTGATGCCATTTTGGTACACCCTGCACCCCGTAGACTGTTGTTAGCTCTTGGTG 240 consensus_6166#1 ------------------------------------------------------------ consensus_6166#0 TTTCGCTTGGGAAAAAAAAACAGGACGACGGCACTCTCGCGAAGAATTCAATGCAAAGAC 300 consensus_6166#1 ------------------------------------------------------------ consensus_6166#0 TTTACCTGAGGGGCTACGCATGGGAGTGGCAGTGACGGAACGTACGATTGGTGATGGTTA 360 consensus_6166#1 ------------------------------------------------------------ consensus_6166#0 ACGATAGAAACGATGCAAACGGAAGAGAAATAGGCCGGCAAGAATGGCGGTACCGGTGGT 420 consensus_6166#1 ------------------------------------------------------------ consensus_6166#0 AGTGGAAATGGACGTAGTGGTAGCACGTAGGACGTGTGGGGATAAACGGCACCAGCAAAA 480 consensus_6166#1 ------------------------------------------------------------ consensus_6166#0 GCAAAAAGCAAAAAGCTGTTACCATTCAAATAGTGGTGGCGAATGGTGTAGAAATGAGAG 540 consensus_6166#1 ------------------------------------------------------------ consensus_6166#0 GGCGGGAGGATGGAATCAAAAGTAAGGAAAAGGAAAAGATGAAAAAAAAAACACAAACAC 600 consensus_6166#1 ---------GTGAAAT-AGAGGAGGATATTATCTTTACATGTTGAAATAATGACAAATTA 50 ** *** * * * * * * *** *** ** ***** consensus_6166#0 ACACATACATACA--CACATACACGAGAGCAAACAATTAGTAGTCTGATTCAATTGTAGT 658 consensus_6166#1 GCATGCATATTCAATTAGGTGCGCGGGACAAGACAACCC----CCCAATTCTACGGCC-T 105 ** * ** ** * * * ** ** * **** * **** * * * consensus_6166#0 GATAGTAACATTTAGTAAGTGACACATGGCGATA-AATATGTAATTTGATAAGGTTGATG 717 consensus_6166#1 TATGCCGGCCTTT-GTACATACGTTCGAACGTTACGAAACAAAACAAAACAAAAAT-ATT 163 ** * *** *** * ** ** * * ** * ** * ** consensus_6166#0 AATGGTGAAGCAGAACGGAAAAGAGAGATAGAAAGAGAGAGCAAGAAAGCAAACAAAACA 777 consensus_6166#1 AACAAAAAACCCCAACACACAT-ACACATA-AAAGAAAAACCCCCTCCCCTCGTAGCCTA 221 ** ** * *** * * * * *** ***** * * * * * * consensus_6166#0 AAACAAAGCTACCAAGAGCAGATAAGCTAAAAAGCAGAAAAGAAACAAACAAACAAAAAC 837 consensus_6166#1 AAGCAAGAT--GCAGTAGCACGCAGTTTAATGCAAACTACGAAGAGAGAGAGAGAGATGC 279 ** *** ** **** * *** * * * * * * * * * * * consensus_6166#0 AAACTAACTAACAAACAAACATAAGTATGGAAAATGATTAATGAAAGGCAAGCTTAAAAA 897 consensus_6166#1 TGTTTGTTTAGTAGAATTCATCGAGTACGCGAGTT--TTATCAGAAAAAAAGATATGAAA 337 * ** * * **** * * * *** ** *** * *** consensus_6166#0 GAAAAAGCGTATTCAGCAGGGTGAAAAAGGAAAGGAACAAGGAAATGGTTTTTTGAGGTG 957 consensus_6166#1 GCGAAACTTCACACACACGTGTCCGGAAAGTCATGAGTCTGCCGGTATGCCCCTTAGCTT 397 * *** * ** * ** ** * * ** * * * ** * consensus_6166#0 AAAATGT-GAATGTGAAAAACAAATGACCGAAATCGATGCTGAGCTGTGGCCGCGTGTTG 1016 consensus_6166#1 TCTCTGTTGCCTGTCTGCAACAGGTG-CTGCG--CGATGATTAG-----GCTATGTTTTC 449 *** * *** **** ** * * ***** * ** ** ** ** consensus_6166#0 CTGGAGCGTGTTTAAATGCGGGGAAACAAAACCCCGATGATATGGTATGCCGGAAAGCTC 1076 consensus_6166#1 TCATAGC---TTTGCGCCTACCGAGCTGATCTTTCGCAGGAACATCAAACACAGACACTC 506 *** *** ** * ** * * * * * *** consensus_6166#0 AGTAACGCGTCAAGCACAGCAAGTGCTGTAGTTTAAACTTTTGCGCACACCTGAGTTAAT 1136 consensus_6166#1 GTTAGTACGGTAACCG-----AATGAGATTGATGCCATTTTGGTACAC-CCTG------- 553 ** ** ** * * ** * * * * *** * *** **** consensus_6166#0 CCCTCCGGAAAAAATACGTAGTTGCCCGTTTTGTTGTTGAAAAAAGCTAAAAATTAACGT 1196 consensus_6166#1 CACCCCGTAGACTGTTGTTAGCTCTTGGTGTTTCGCTTGGCAAAACAGGACGACGGCACT 613 * * *** * * * *** * ** ** *** **** * * * consensus_6166#0 GACGTTGTAAAGGAAATGCAAATCCCAGG-ATCGACAAGTGATT-CAAAATTAACGGCTA 1254 consensus_6166#1 CTCGCGAAGAATTCAATTCAAAGGCTACGCATGGGAGCGCGAAGACGGAACGAACGATTG 673 ** ** *** **** * * * ** * * ** * ** **** * consensus_6166#0 TTGGAAAAACACGTGAATTCACAAAATTTAACTATTGACCTGATCTGAGCCGTGTAGTTG 1314 consensus_6166#1 GTGATGGTTAACG---ATAGAAACGATGCAACGAAAGAGCGGTTCTGGNGGTAGTGGAAA 730 ** *** ** * * ** *** * ** * * **** ** * consensus_6166#0 TCGTTGTTGTTATCAGTACATACAGTACACATACATTCAGTCAGTAGAACCATGCTACTA 1374 consensus_6166#1 T----------------------------------------------------------- 731 * consensus_6166#0 TATCCAAAGCATCAAGTTACCAAATGATTGCGTTACACGTTTCTATAGTGAAGATGTTTT 1434 consensus_6166#1 ------------------------------------------------------------ consensus_6166#0 TTTTCGTTTTGTCTTCTTTCGGTCTCACATGCTACTCATTAAATTATTCTCACCCTTTCT 1494 consensus_6166#1 ------------------------------------------------------------ consensus_6166#0 TTGCGTCTCACCAAATCTCTCTCTCGCCCGCTGAGCACCAGTGAGCAGAGCGTGAGCAAA 1554 consensus_6166#1 ------------------------------------------------------------ consensus_6166#0 GCGGGCAGGGGTTGTTCTGTTTGCGACTGGTTGCTG 1590 consensus_6166#1 ------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||