These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6167#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 729 fasta sequence [CCCGAGGTTANGCGATACACGATCCACCAAAACCAGCGTATATCTGGCACACATTGCGCAGCTACCGGGAGCAAGTCGCTCCGATACAACCGCACCGATCGACTTTTCCGNGTCACCTCCATCAAGCAACCGCTCCAAGATGAACAATGCTACTCACCGGTGGACTACTTGTTCCTGCTCGTGGCCTGGCTCGCTCGTGTCCTGGCTCGATGTTTGGCCCTGTTCTGGACCTGTTCTGGACCGGCGCTCAGCTGCCTGGGCGCAGTCGGCGGCTATCCGGGCTGCGGTCGGAGGGTATCCGGGCGCGGTCGGCGGTTTGCCCATGTACCCTGGGCCGTCCCGGCCTTGGACATGCTGCCTGTGTACCCTGCCGTCTACCGGGCTGCACCGATGCTGCCCCTGACTGCCTGGNCATGCCGTACGCTTACGGTCTGCTGCCATGCCGGCTGATGATGCCAGTTGCGCCACCCACACTGGCAGGCAACCTGCTGCACCGTATGGCTCGAACACGACGTGCTGGGACGGTATGGTGTGGNCGACCATGGCCGAGGATTTGCAAGCAGGCGCGCCCAGGACATGCAGTGCCGCCAGCTNAGCACGCGCTTCGACGCCTGACGAACAGCATGCTGACTGACGACCGGCTCCTACTGGCAGTACAAGCGCTGGCCAATGCGCTCCAGCTGCGCACNCGGACCTGACCGCGGGGCACANGCACTCGAGCAGGAANCT] [+] EMBL AL931872 [CCCGAGGTTANGCGATACACGATCCACCAAAACCAGCGTATATCTGGCACACATTGCGCAGCTACCGGGAGCAAGTCGCTCCGATACAACCGCACCGATCGACTTTTCCGNGTCACCTCCATCAAGCAACCGCTCCAAGATGAACAATGCTACTCACCGGTGGACTACTTGTTCCTGCTCGTGGCCTGGCTCGCTCGTGTCCTGGCTCGATGTTTGGCCCTGTTCTGGACCTGTTCTGGACCGGCGCTCAGCTGCCTGGGCGCAGTCGGCGGCTATCCGGGCTGCGGTCGGAGGGTATCCGGGCGCGGTCGGCGGTTTGCCCATGTACCCTGGGCCGTCCCGGCCTTGGACATGCTGCCTGTGTACCCTGCCGTCTACCGGGCTGCACCGATGCTGCCCCTGACTGCCTGGNCATGCCGTACGCTTACGGTCTGCTGCCATGCCGGCTGATGATGCCAGTTGCGCCACCCACACTGGCAGGCAACCTGCTGCACCGTATGGCTCGAACACGACGTGCTGGGACGGTATGGTGTGGNCGACCATGGCCGAGGATTTGCAAGCAGGCGCGCCCAGGACATGCAGTGCCGCCAGCTNAGCACGCGCTTCGACGCCTGACGAACAGCATGCTGACTGACGACCGGCTCCTACTGGCAGTACAAGCGCTGGCCAATGCGCTCCAGCTGCGCACNCGGACCTGACCGCGGGGCACANGCACTCGAGCAGGAANCT] consensusID : consensus_6167#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 663 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGCATCTTTGATGTGCTAGTGGACACATTTCGTTGTGAACCCAAATAAAAATCGCTATGGTGTTCGGTTCCAAGGTGATCAAAGCCGGCAACGGCGAACCCGATGCGTTCGAGACGCAGATCGGCCAGGCCATCCTGGAGCTGGAGATGAACTCGGATCTGAAGCCGCAGCTGCGTGATCTGTACATCACCCGCGCGCGTGAGGTCGAGTTCAACAACAAGAAGGCGATCATCATCTACGTGCCGGTGCCGAAACAGAAGGCCTTCCAGAAGGTACAGACCCGTCTGGTGCGCGAGTTGGAGAAGAAGTTCTCCGGCAAGCACGTCGTGTTCATTGCCGAGCGCCGCATTCTGCCCAAACCGATGCGTGGACGCCGCGACCCCAACAAGCAGAAGAGACCGCGTTCCCGAACGCTCACCGCCGTGTACGATGCCATCCTGGAGGATCTGGTATTCCCGGCGGAGGTGGTCGGCAAGCGTATCCGCGTCAAGCTCGACGGATCCCAGCTGATAAAGGTGCACCTGGATAAGAACCAGCAGACCACCATCGAACACAAAGTTGACACTTTTGCGTCGGTGTACAAGAAGCTGACTGGCCGTGACGTTACGTTCGAATTCCCAGAGAACTACCTGTAAAAT] [+] EMBL BM608374 [CCGCCCACGCGTCCGCCCACGCGTCCGCATCTTTGATGTGCTAGTGGACACATTTCGTTGTGAACCCAAATAAAAATCGCTATGGTGTTCGGTTCCAAGGTGATCAAAGCCGGCAACGGCGAACCCGATGCGTTCGAGACGCAGATCGGCCAGGCCATCCTGGAGCTGGAGATGAACTCGGATCTGAAGCCGCAGCTGCGTGATCTGTACATCACCCGCGCGCGTGAGGTCGAGTTCAACAACAAGAAGGCGATCATCATCTACGTGCCGGTGCCGAAACAGAAGGCCTTCCAGAAGGTACAGACCCGTCTGGTGCGCGAGTTGGAGAAGAAGTTCTCCGGCAAGCACGTCGTGTTCATTGCCGAGCGCCGCATTCTGCCCAAACCGATGCGTGGACGCCGCGACCCCAACAAGCAGAAGAGACCGCGTTCCCGAACGCTCACCGCCGTGTACGATGCCATCCTGGAGGATCTGGTATTCCCGGCGGAGGTGGTCGGCAAGCGTATCCGCGTCAAGCTCGACGGATCCCAGCTGATAAAGGTGCACCTGGATAAGAACCAGCAGACCACCATCGAACACAAAGTTGACACTTTTGCGTCGGTGTACAAGAAGCTGACTGGCCGTGACGTTACGTTCGAATTCCCAGAGAACTACCTGTAAAAT] [+] EMBL BM653026 [CCGCCCACGCGTCCGCCCACGCGTCCG CTTTGATGTGCTAGTGGACACATTTCGTTGTGAACCCAAATAAAAATCGCTATGGTGTTCGGTTCCAAGGTGATCAAAGCCGGCAACGGCGAACCCGATGCGTTCGAGACGCAGATCGGCCAGGCCATCCTGGAGCTGGAGATGAACTCGGATCTGAAGCCGCAGCTGCGTGATCTGTACATCACCCGCGCGCGTGAGGTCGAGTTCAACAACAAGAAGGCGATCATCATCTACGTGCCGGTGCCGAAACAGAAGGCCTTCCAGAAGGTACAGACCCGTCTGGTGCGCGAGTTGGAGAAGAAGTTCTCCGGCAAGCACGTCGTGTTCATTGCCGAGCGCCGCATTCTGCCCAAACCGATGCGTGGACGCCGCGACCCCAACAAGCAGAAGAGACCGCGTTCCCGAACGCTCA ] consensusID : consensus_6167#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 656 fasta sequence [CCGAGGAAAAAAGCGCAAAAGAAACGAAGGAAAAACCAGACGCAAAACGGCTCTAGGAGAGACACGCTTTAGAGTAACGCCGGCAACAATTGGCACCTAGGAACACAGTGCACCAGTGGGAATTGGGTGCTGCGCGAGGGTCAGTATTACAACCCGTACTTCCCCGGTGGTGCCATCTCGATGGCGCAGGCACTGTACAACGAGGCCGCTGAATATTCCGACGGTACGCCACCGACGGCCAGCCAGCTGGCGAAGGATGTGTCCACGTTCCTGGTGTGGGCCGCCGAACCTTACCACGACGAGCGCAAGCGCATGGGCATCAAATCGGTCGGCATCATCATGATCCTCGGTGCGCTGTCCTACTACATCAAGCGACACAAGTGGGCCGCGCTCAAGACGCGAAAGATTTCCTTCCACCCAAAGAGCAAGTAAGCGGGACCGCGCTCGGGCCGCACCTACAACAGCAGCAACAGCATAGGTGAGATGTGAGGTGGAGGAAACTGGCCATCAGCTGCCGACCGCGCGAATCGAGACCACTGGACGGGAATCATCGGCATACAAACAACAAAACACACACACAGAGGAAAAAAGCGCAAAAGAAACGAAGGAAAAACAACTGTTACTACCGCGCAAAACATAACGAGAAACACACGCAT] [+] EMBL BM647580 [CCGAGGAAAAAAGCGCAAAAGAAACGAAGGAAAAACCAGACGCAAAACGGCTCTAGGAGAGACACGCTTTAGAGTAACGCCGGCAACAATTGGCACCTAGGAACACAGTGCACCAGTGGGAATTGGGTGCTGCGCGAGGGTCAGTATTACAACCCGTACTTCCCCGGTGGTGCCATCTCGATGGCGCAGGCACTGTACAACGAGGCCGCTGAATATTCCGACGGTACGCCACCGACGGCCAGCCAGCTGGCGAAGGATGTGTCCACGTTCCTGGTGTGGGCCGCCGAACCTTACCACGACGAGCGCAAGCGCATGGGCATCAAATCGGTCGGCATCATCATGATCCTCGGTGCGCTGTCCTACTACATCAAGCGACACAAGTGGGCCGCGCTCAAGACGCGAAAGATTTCCTTCCACCCAAAGAGCAAGTAAGCGGGACCGCGCTCGGGCCGCACCTACAACAGCAGCAACAGCATAGGTGAGATGTGAGGTGGAGGAAACTGGCCATCAGCTGCCGACCGCGCGAATCGAGACCACTGGACGGGAATCATCGGCATACAAACAACAAAACACACACACAGAGGAAAAAAGCGCAAAAGAAACGAAGGAAAAACAACTGTTACTACCGCGCAAAACATAACGAGAAACACACGCAT] consensusID : consensus_6167#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 329 fasta sequence [TGCCCCCCAAGGATTAAACCTGTTGACGGATAAATCCTGCCAAAATCATTGCTCGGCGCTGCCGGGCATGGTCTTGAAAAGGAGCTCAATCTGAGCGGCAACCGTTTCGCGCACTTTCCCGAACAGGTTATCGAGCTGCGATCGCTCAAGTATCTCTACTGGCGGCAATCAGATCACCAACGTTTCGAAGGACATCTGGAAGCTGAGAACTACAGTCCCTGGTTCACTGGGGTGGAAACCTCATTAACGAGATTCCGGGAAACGGCGGGCTTGGTCAAACAACCTGGACGCGCTCCTCTCTGTGAATAATCTGGTTCGAGGGGCTTCTT] [+] EMBL AL695921 [TGCCCCCCAAGGATTAAACCTGTTGACGGATAAATCCTGCCAAAATCATTGCTCGGCGCTGCCGGGCATGGTCTTGAAAAGGAGCTCAATCTGAGCGGCAACCGTTTCGCGCACTTTCCCGAACAGGTTATCGAGCTGCGATCGCTCAAGTATCTCTACTGGCGGCAATCAGATCACCAACGTTTCGAAGGACATCTGGAAGCTGAGAACTACAGTCCCTGGTTCACTGGGGTGGAAACCTCATTAACGAGATTCCGGGAAACGGCGGGCTTGGTCAAACAACCTGGACGCGCTCCTCTCTGTGAATAATCTGGTTCGAGGGGCTTCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6167#2 ------------------------------------------------------CCGAGG 6 consensus_6167#3 ------------------------------------------------------------ consensus_6167#0 CCCGAGGTTANGCGATACACGATCCACCAAAACCAGCGTATATCTGGCACACATTGCGCA 60 consensus_6167#1 ------------------------------------------------------------ consensus_6167#2 AAAAAAGCGCAAAAGAAACGAAGGAAAAACCAGACGCAAAACGGCTCTAGGAG-AGACAC 65 consensus_6167#3 ---------------------------------------TGCCCCCCAAGGATTAAACCT 21 consensus_6167#0 GCTACCGGGAGCAAGTCGCTCCGATACAACCGCACCGATCGACTTTTCCGNGTCACCTCC 120 consensus_6167#1 ----CCGCCCACGCGTC-CGCCCACGCGTCCGCATCTTTGATGTGCTAGTGGACACATTT 55 * consensus_6167#2 GCTTTAGAGTAACGCC--GGCAACAATTGGCACCTAGGAACACAGTGCACCAG-TGGGAA 122 consensus_6167#3 GTTGACGGATAAATCC--TGCCAAAATCATTGCTCGGCGCTGCCGGGCATGGTCTTGAAA 79 consensus_6167#0 ATCAAGCAACCGCTCCAAGATGAACAATGCTACTCACCGGTGGACTACTTGTTCCTGCTC 180 consensus_6167#1 CGTTGTGAACCCAAATAAAAATCGCTATGGTGTTCGGTTCCAAGGTGATCAAAGCCGGCA 115 * consensus_6167#2 TTGGGTG---CTGCGCGAGGGTCAGTATTACAACCCGTACTTCCCCGGTGGTGCCATCT- 178 consensus_6167#3 AGGAGCT---CAATCTGAGCGGCA--ACCGTTTCGCGCACTTTCCCGAACAGGTTATCGA 134 consensus_6167#0 GTGGCCTGGCTCGCTCGTGTCCTGGCTCGATGTTTGGCCCTGTTCTGGACCTGTTCTGGA 240 consensus_6167#1 ACGGCGAACCCGATGCGTTCGAGACGCAGATCGGCCAGGCCATCCTGGAGCTGGAGATGA 175 * * * * * * consensus_6167#2 ----CGATG---GCGCAGGCACTGTACAACGAGGCCGCTGAATATTCCGACGGTACGCCA 231 consensus_6167#3 GCTGCGATC---GCTCAAGTATC-TCTACTGGCGGCAATCAGATCACCAACGTTTCG--A 188 consensus_6167#0 CCGGCGCTC---AGCTGCCTGGGCGCAGTCGGCGGCTATCCGGGCTGCGGTCGGAGGGTA 297 consensus_6167#1 ACTCGGATCTGAAGCCGCAGCTGCGTGATCTGTACATCACCCGCGCGCGTGAGGTCGAGT 235 * * * * consensus_6167#2 CCGACGGCCAGCCAGCTGGCGAAGGATGTGT-CC---ACGTTCCTGGTGTGGGCCGCCGA 287 consensus_6167#3 AGGACATCTGGA-AGCTGAGAACTACAGTCC-CT---GGTTCACTGGGGTGGA------A 237 consensus_6167#0 TCCGGGCGCGGTCGGCGGTTTGCCCATGTAC-CCTGGGCCGTCCCGGCCTTGGACATGCT 356 consensus_6167#1 TCAACAACAAGAAGGCGATCATCATCTACGTGCCGGTGCCGAAACAGAAGGCCTTCCAGA 295 * ** * * consensus_6167#2 ACCTTACCACGACGA----GCGCAAGCGCATGGGC-ATCAAATCGGTCGGCATCATCATG 342 consensus_6167#3 ACCTCATTAACGAGA----TTCCGGGAAACGGCGG-GCTTGGTCAAACAACCTGGACGCG 292 consensus_6167#0 GCCTGTGTACCCTGCCGTCTACCGGGCTGCACCGATGCTGCCCCTGACTGCCTGGNCATG 416 consensus_6167#1 AGGTACAGACCCGTCTGGTGCGCGAGTTGGAGAAGAAGTTC-TCCGGCAAGCACGTCGTG 354 * * * * * * * * consensus_6167#2 ATCCTCGGTGCGC-TGTCCTACTACATCAA---GCGACACAAGTGGGCCGCGCTCAAGAC 398 consensus_6167#3 CTCCTCTCTGTGAATAATCTGGTTCGAGGG---GCTTCTT-------------------- 329 consensus_6167#0 CCGTACGCTTACGGTCTGCTGCCATGCCGGCTGATGATGCCAGTTGCGCCACCCACACTG 476 consensus_6167#1 TTCATTGCCGAGCGCCGCATTCTGCCCAAACC-GATGCGTGGACGCCGCGACCCCAACAA 413 * consensus_6167#2 GCGAAAGATTTCCTTCCACCCAAAGAGCAAGTAAGCGGGACCGCGCTCGGGCCGCACCTA 458 consensus_6167#3 ------------------------------------------------------------ consensus_6167#0 GCAGGCAACCTGCTGCACCGTATGGCTCGAACACGACGTGCTGGGACGGTATGGTGTGGN 536 consensus_6167#1 GCAGAAGAGACCGCGTTCCCGAACGCTC-ACCGCCGTGTACGATGCCATCCTGGAGGATC 472 consensus_6167#2 CAACAGCAGCAACAGCATAGGTGAGATGTGAGGTGGAGGAAACTGGCCATCAGCTGCCGA 518 consensus_6167#3 ------------------------------------------------------------ consensus_6167#0 CGACCATGGCCG-AGGATTTGCAAGCAGGCGCGCCCAGGACATGCAGTGCCGCCAGCTNA 595 consensus_6167#1 TGGTATTCCCGGCGGAGGTGGTCGGCAAGCGTATCCGCGTCAAGCTCGACGGAT--CCCA 530 consensus_6167#2 CCGCGCGAATCGAGACCACTGGACGGGAATCATCGGCATACAAACAACAAAACACACACA 578 consensus_6167#3 ------------------------------------------------------------ consensus_6167#0 GCACGCGCTTCGACGCCTGACGAACAGCAT-GCTGACTGACGACCGGCTCCTACTGGCAG 654 consensus_6167#1 GCTGATAAAGGTGCACCTGGATAAGAACCA-GCAGACCACCATCGAACACAAAGTTGACA 589 consensus_6167#2 CAGAGGAAAAAAGCGCAAAAGAAACGAAGGAAAAACAACTGTTACTACCGCGCAAAACAT 638 consensus_6167#3 ------------------------------------------------------------ consensus_6167#0 TACAAGCGCTGGCCAATGCGCTCCAGCTGCGCACNCGGACCTGACCGCGGGGCACANGCA 714 consensus_6167#1 CTTTTGCGTCGGTGTACAAGAAGCTGACTGGC-CGTGACGTTACGTTCGAATTCCCAGAG 648 consensus_6167#2 AACGAGAAACACACGCAT 656 consensus_6167#3 ------------------ consensus_6167#0 CTCGAGCAGGAANCT--- 729 consensus_6167#1 AACTACCTGTAAAAT--- 663 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||