These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6174#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 684 fasta sequence [CCGGTAAACCGCATATCTGTCGATCGGAATATCCTGCTAATTTCTTCAGCCATCTGTAAAGAAGCAGTGAGCCACCCTCTCTTTCCCAGGCGCGGCACGGCACATTGGTGTGAGCGGGCGGTTTGTGCGGCGTTTTGCTGGTGTGTGATCGAATACGCCAAGTGCGCGACCCGGCCGACAGTCCGTCGTTTTGTTTGGTTGCTGTTTCTCCGTGAGCACCAGGAGGCTGGATTGTGTTAAGTGATAGCGTGTGAGAGATACTGTGACCCTTCCCCAAAATCGACCAAAGCGTGTACCCGGTGTGTGCGTGAGTGATTGTGTGCGGGAAAGCGAGAAGCAATTGTGTGTGTGTGTGTTGTGCTGCAGAGGGCGAGAGGAGCAGGCACAGGTGGTGTGGAACGTTTCGTCGTCTCGCCGCAATCGGCGGTCTATGACCGCTGGAAAGAAAGCAGTAGAAGCAAAAGTAGGCATCTTGCGGTAGAAGTGAACAGGAAAAGGCCTCAGGATGAGTTGCCCGATGCCGGAAATTGGTTCCTGCATCTCGCTGATATCGAAGGCCGATATCCGCTACGAGGGACTGTTGTTCACCGTTGATCCGGAGCGGTGCACGATCGCCCTTGCTCGAGTGAAGTCGTATGGTACCGAGGATCGGGAGACCCAGTTCCCGATTGCGCCGCAGAACCA] [+] EMBL BM609511 [CCGGTAAACCGCATATCTGTCGATCGGAATATCCTGCTAATTTCTTCAGCCATCTGTAAAGAAGCAGTGAGCCACCCTCTCTTTCCCAGGCGCGGCACGGCACATTGGTGTGAGCGGGCGGTTTGTGCGGCGTTTTGCTGGTGTGTGATCGAATACGCCAAGTGCGCGACCCGGCCGACAGTCCGTCGTTTTGTTTGGTTGCTGTTTCTCCGTGAGCACCAGGAGGCTGGATTGTGTTAAGTGATAGCGTGTGAGAGATACTGTGACCCTTCCCCAAAATCGACCAAAGCGTGTACCCGGTGTGTGCGTGAGTGATTGTGTGCGGGAAAGCGAGAAGCAATTGTGTGTGTGTGTGTTGTGCTGCAGAGGGCGAGAGGAGCAGGCACAGGTGGTGTGGAACGTTTCGTCGTCTCGCCGCAATCGGCGGTCTATGACCGCTGGAAAGAAAGCAGTAGAAGCAAAAGTAGGCATCTTGCGGTAGAAGTGAACAGGAAAAGGCCTCAGGATGAGTTGCCCGATGCCGGAAATTGGTTCCTGCATCTCGCTGATATCGAAGGCCGATATCCGCTACGAGGGACTGTTGTTCACCGTTGATCCGGAGCGGTGCACGATCGCCCTTGCTCGAGTGAAGTCGTATGGTACCGAGGATCGGGAGACCCAGTTCCCGATTGCGCCGCAGAACCA] consensusID : consensus_6174#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 659 fasta sequence [CGACCCACGCGTCCGGCGCGCTGTCGATTTTTTTCTCCTCCACACAACGTCAGAGAAGTGAGTGTGCGGAATAGCGAGTGCAGCGAGCGTTCCTTTCTTCGGTTTTTTCGGCGTGTGTCACGTAGAAATTCGCGCTTCGCAAGGCGGCTCGACGGCGTGTGTGCGTGTCCCCGGGTGTGTTAGCGGTGCTCTCTTTCCCAGGCGCGGCACAGCACATTGGTGTGTGACCGGGCGGTTTGTGTGGCGTTTTGCTGGTGTGTGATCGAATACGCCAAGTGCGCGACCCGGCCGACAGCCCGTCGTTTTGTTTGGCTGCTGTTTCTCCGTGAGCACCAGGAGGAGGCTGAATTGTGTTGAGTGGTAGCGTGTGAGAGATACTGTGACCCTT-CCCCAAAAACGACCAAAGC--GTGTACCCGGTGTGTGCGTGAGTGATTGTGTGCGGGAAGGCGAGAAGCAA-T---TGTGTGTGTGTGTTGTGCTGCAGAGGGCGAGCGGAGCAGGCACAGGTGGTGTGGAACGTTTCGTCGTCTCGCCGCAGTCGGCGGTCTATGACCGCTGGAAAGAAAGCAGTAGAAGCAAAAGTAGGCATCTTGCGGTAGAAGTGAACAGGAAAAGGCCTCAGGATGAGTTGCCCGATGCCGGAAATTGGTTCCTGCATCTCG] [+] EMBL BM640677 [CGACCCACGCGTCCGGCGCGCTGTCGATTTTTTTCTCCTCCACACAACGTCAGAGAAGTGAGTGTGCGGAATAGCGAGTGCAGCGAGCGTTCCTTTCTTCGGTCTTTTCGGCGTGTGTCGCGTAGAAAATCGCGTTTCGCAAGGCGGCTCCACGGCGTGTGTGCGTGTCCCCGGGTGTGTTAGCGGTGCTCTCTTTCCCAGGCGCGGCACAGCACATTG GTGTGACCGGGCGGTTTGTGTGGCGTTTTGCTGGTGTGTGATCGAATACGCCAAGTGCGCGACCCGGCCGACAGTCCGTCGTTTTGTTTGGTTGCTGTTTCTCCGTGAGCACC AGGAGGCTGGATTGTGTTAAGTGATAGCGTGTGAGAGATACTGTGACCCTT CCCCAAAAACGACCAAAGC GTGTACCCGGTGTGTGCGTGAGTGATTGTGTGCGGGAAGGCGAGAAGCAA T TGTGTGTGTGTGTTGTGCTGCAGAGGGCGAGCGGAGCAGGCACAGGTGGTGTGGAACGTTTCGTCGTCTCGCCGCAGTCGGCGGTCTATGACCGCTGGAAAGAAAGCAGTAGAAGCAAAAGTAGGCATCTTGCGGTAGAAGTGAACAGGAAAAGGCCT ] [+] EMBL BM600984 [ ccgGTCGATTTTTTTCTCCTCCACACAACGTCAGAGAAGTGAGTGTGCGGAATAGCGAGTGCAGCGAGCGTTCCTTTCTTCGGTTTTTTCGGCGTGTGTCACGTAGAAATTCGCGCTTCGCAAGGCGGCTCGACGGCGTGTGTGCGTGTCCCCGGGTGTGTTAGCGGTGCTCTCTTTCCCAGGCGCGGCACAGCACATTGGTGTGTGACCGGGCGGTTTGTGTGGCGTTTTGCTGGTGTGTGATCGAATACGCCAAGTGCGCGACCCGGCCGACAGCCCGTCGTTTTGTTTGGCTGCTGTTTCTCCGTGAGCACCAGGAGGAGGCTGAATTGTGTTGAGTGGTAGCGTGTG ] [+] EMBL BM587340 [ ccgGAGAAGTGAGTGTGCGGAATAGCGAGTGCAGCGAGCGTTCCTTTCTTCGGTTTTTTCGGCGTGTGTCACGTAGAAATTCGCGCTTCGCAAGGCGGCTCGACGGCGTGTGTGCGTGTCCCCGGGTGTGTTAGCGGTGCTCTCTTTCCCAGGCGCGGCACAGCACATTGGTGTGTGACCGGGCGGTTTGTGTGGCGTTTTGCTGGTGTGTGATCGAATACGCCAAGTGCGCGACCCGGCCGACAGCCCGTCGTTTTGTTTGGCTGCTGTTTCTCCGTGAGCACCAGGAGGAGGCTGAATTGTGTTGAGTGGTAGCGTGTGAAAGATACAGTGACTCTTCCCCCAAAAACGACCAAAGCAAGTGTACCCGGTGTGTGCGTGAGTGATTGTGTGCGGGAAAGCGAGAAGCAAGTGGGTGTGTGTGTGTGTTGTGCTGCAGAGGGCGAGAGGAGCAGGCACAGGTGGTGTGGAACGTTTCGTCGTCTCGCCGCAAACGGCGGTCTATGACCGCTGGAAAGAAAGCAGTAGAAG TAAAGCAGGCATCTTGCGGTAGAAGTGAACAGGAAAAGGCCTCAGGATGAGTTGCCCGATGCCGGAAATTGGTTCCTGCATCTCG] consensusID : consensus_6174#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 508 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGAGAGAAGTGAGTGTGCGGAATAGCGAGTGCAGCGAGCGTTCCTTTCTTCGGTCTTTTCGGCGTGTGTCGCGTAGAAAATCGCGCTTCGCAAGGCGGCTCCACGGCGTGTGTGCGTGTCCCCGGGTGTGTTAGCGGTGCTCTCTTTCCCAGGCGCGGCACGGCACATTGGTGTGAGCGGGCGGTTTGTGCGGCGTTTTGCTGGTGTGTGATCGAATACGCCAAGTGCGCGACCCGGCCGACAGTCCGTCGTTTTGTTTGGTTGCTGTTTCTCCGTGAGCACCAGGAGGCTGGATTGTGTTAAGTGATAGCGTGTGAGAGATACTGTGACCCTTCCCCAAAATCGACCAAAGCGTGTACCCGGTGTGTGCGTGAGTGATTGTGTGCGGGAAAGCGAGAAGCAATTGTGTGTGTGTGTGTTGTGCTGCAGAGGGCGAGAGGAGCAGGCACAGGTGGTGTGGAACGTTTCGTCGTCTCGCCGCAA] [+] EMBL BM653003 [CCGCGGACGCGTGGGCGGACGCGTGGGAGAGAAGTGAGTGTGCGGAATAGCGAGTGCAGCGAGCGTTCCTTTCTTCGGTCTTTTCGGCGTGTGTCGCGTAGAAAATCGCGCTTCGCAAGGCGGCTCCACGGCGTGTGTGCGTGTCCCCGGGTGTGTTAGCGGTGCTCTCTTTCCCAGGCGCGGCACGGCACATTGGTGTGAGCGGGCGGTTTGTGCGGCGTTTTGCTGGTGTGTGATCGAATACGCCAAGTGCGCGACCCGGCCGACAGTCCGTCGTTTTGTTTGGTTGCTGTTTCTCCGTGAGCACCAGGAGGCTGGATTGTGTTAAGTGATAGCGTGTGAGAGATACTGTGACCCTTCCCCAAAATCGACCAAAGCGTGTACCCGGTGTGTGCGTGAGTGATTGTGTGCGGGAAAGCGAGAAGCAATTGTGTGTGTGTGTGTTGTGCTGCAGAGGGCGAGAGGAGCAGGCACAGGTGGTGTGGAACGTTTCGTCGTCTCGCCGCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6174#1 CGACCCACGCGTCCGGCGCGCTGTCGATTTTTTTCTCCTCCACACAACGTCAGAGAAGTG 60 consensus_6174#2 ---------CCGCGGACGCGTGGGCGG--------------ACGCG-TGGGAGAGAAGTG 36 consensus_6174#0 ------------------------------------------------------------ consensus_6174#1 AGTGTGCGGAATAGCGAGTGCAGCGAGCGTTCCTTTCTTCGGTTTTTTCGGCGTGTGTCA 120 consensus_6174#2 AGTGTGCGGAATAGCGAGTGCAGCGAGCGTTCCTTTCTTCGGTCTTTTCGGCGTGTGTCG 96 consensus_6174#0 --------------------------------------CCGGTAAACCGCATATCTGTCG 22 **** * **** consensus_6174#1 CGTAGAAATTCGCGCTTCGCAAGGCGGCTCGACGGCGTGTGTGCGTGTCCCCGGGTGTGT 180 consensus_6174#2 CGTAGAAAATCGCGCTTCGCAAGGCGGCTCCACGGCGTGTGTGCGTGTCCCCGGGTGTGT 156 consensus_6174#0 ATCGGAATATCCTGCT------AATTTCTTCA-GCCATCTGTAAA-------GAAGCAGT 68 *** ** *** ** * * * * *** * ** consensus_6174#1 TAGCGGTGCTCTCTTTCCCAGGCGCGGCACAGCACATTGGTGTGTGACCGGGCGGTTTGT 240 consensus_6174#2 TAGCGGTGCTCTCTTTCCCAGGCGCGGCACGGCACATTGGTGTGAG--CGGGCGGTTTGT 214 consensus_6174#0 GAGCCACCCTCTCTTTCCCAGGCGCGGCACGGCACATTGGTGTGAG--CGGGCGGTTTGT 126 *** ********************** ************* * ************ consensus_6174#1 GTGGCGTTTTGCTGGTGTGTGATCGAATACGCCAAGTGCGCGACCCGGCCGACAGCCCGT 300 consensus_6174#2 GCGGCGTTTTGCTGGTGTGTGATCGAATACGCCAAGTGCGCGACCCGGCCGACAGTCCGT 274 consensus_6174#0 GCGGCGTTTTGCTGGTGTGTGATCGAATACGCCAAGTGCGCGACCCGGCCGACAGTCCGT 186 * ***************************************************** **** consensus_6174#1 CGTTTTGTTTGGCTGCTGTTTCTCCGTGAGCACCAGGAGGAGGCTGAATTGTGTTGAGTG 360 consensus_6174#2 CGTTTTGTTTGGTTGCTGTTTCTCCGTGAGCACCAGGAGG---CTGGATTGTGTTAAGTG 331 consensus_6174#0 CGTTTTGTTTGGTTGCTGTTTCTCCGTGAGCACCAGGAGG---CTGGATTGTGTTAAGTG 243 ************ *************************** *** ******** **** consensus_6174#1 GTAGCGTGTGAGAGATACTGTGACCCTTCCCCAAAAACGACCAAAGCGTGTACCCGGTGT 420 consensus_6174#2 ATAGCGTGTGAGAGATACTGTGACCCTTCCCCAAAATCGACCAAAGCGTGTACCCGGTGT 391 consensus_6174#0 ATAGCGTGTGAGAGATACTGTGACCCTTCCCCAAAATCGACCAAAGCGTGTACCCGGTGT 303 *********************************** *********************** consensus_6174#1 GTGCGTGAGTGATTGTGTGCGGGAAGGCGAGAAGCAATTGTGTGTGTGTGT--TGTGCTG 478 consensus_6174#2 GTGCGTGAGTGATTGTGTGCGGGAAAGCGAGAAGCAATTGTGTGTGTGTGTGTTGTGCTG 451 consensus_6174#0 GTGCGTGAGTGATTGTGTGCGGGAAAGCGAGAAGCAATTGTGTGTGTGTGTGTTGTGCTG 363 ************************* ************************* ******* consensus_6174#1 CAGAGGGCGAGCGGAGCAGGCACAGGTGGTGTGGAACGTTTCGTCGTCTCGCCGCAGTCG 538 consensus_6174#2 CAGAGGGCGAGAGGAGCAGGCACAGGTGGTGTGGAACGTTTCGTCGTCTCGCCGCAA--- 508 consensus_6174#0 CAGAGGGCGAGAGGAGCAGGCACAGGTGGTGTGGAACGTTTCGTCGTCTCGCCGCAATCG 423 *********** ******************************************** consensus_6174#1 GCGGTCTATGACCGCTGGAAAGAAAGCAGTAGAAGCAAAAGTAGGCATCTTGCGGTAGAA 598 consensus_6174#2 ------------------------------------------------------------ consensus_6174#0 GCGGTCTATGACCGCTGGAAAGAAAGCAGTAGAAGCAAAAGTAGGCATCTTGCGGTAGAA 483 consensus_6174#1 GTGAACAGGAAAAGGCCTCAGGATGAGTTGCCCGATGCCGGAAATTGGTTCCTGCATCTC 658 consensus_6174#2 ------------------------------------------------------------ consensus_6174#0 GTGAACAGGAAAAGGCCTCAGGATGAGTTGCCCGATGCCGGAAATTGGTTCCTGCATCTC 543 consensus_6174#1 G----------------------------------------------------------- 659 consensus_6174#2 ------------------------------------------------------------ consensus_6174#0 GCTGATATCGAAGGCCGATATCCGCTACGAGGGACTGTTGTTCACCGTTGATCCGGAGCG 603 consensus_6174#1 ------------------------------------------------------------ consensus_6174#2 ------------------------------------------------------------ consensus_6174#0 GTGCACGATCGCCCTTGCTCGAGTGAAGTCGTATGGTACCGAGGATCGGGAGACCCAGTT 663 consensus_6174#1 --------------------- consensus_6174#2 --------------------- consensus_6174#0 CCCGATTGCGCCGCAGAACCA 684 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||