These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6179#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1058 fasta sequence [CCGCCCACGCGTCCGCCGACATATAAATTACCATCCAAACGGCGCACGGCACTGTGTGGGCGTGTATTTGAACGGAACAACAGCGGGGAAAGATTTCGGTTCGAATTGTTTGAACGGGGGTTTCTTCGTGCGACCGGCAAACCCCTTTGAAAAGCACACAAATGCTGCGATCATCATTTTGTACGCCGCCCACCCCCTACAACAGTGCATCATCATCCTCTCCTGCCAACGATTTTCTGGTGCTTTCGGTGCACGAGATGCGGCGTTTTTGTTTTACGTTACTCCGGCGCGCAAGTCAAGCTTATTATACATATATTAACATATATATATTTTTTTGTGTACATTTGTAAACTTATTAATGCATTATATGTTAAGGCGGAGAATGGCGGAGAGATAGGAGATAGCAGCGCGCAAAAGGAAGCCTAGCAGACGACGAAGAAAAAAAAAAAGAAGCAAGCTGAAGCAAAAATAGTGTCCATGAGTCGTGCAGACGAAAAAGGGGAAAGGTGTGTTGCTGTGATGAGACAGGAGGAAGGAACAAAAAACAAAAG--AAAAAACGC--ATATATATAGGGCAATAGTATACAGGAAACTGAAACAGAAATGCAAAACAAATCACTCGCAAGCGATAGGAGTGGATAGGGATGACAGGGGGGATGCCGCGCAATTACACTTACAGGGGTTTTCTAGGTGTTCTCATAGCTGTGGGACACTTTTTTTTACTCTTTCTAACGTAAAAAATGAATTTAATGTACATGAATTTAATGTACATGAACTTAATATAATGAGAATTGGACTCTATAGCACCCTCGTTAGACAAGTCCAATAGGAATGTTCAAGCAGCCTGTCCAATTTCAAACATATGAAGTTCACTTCCAATAAGAAAGAGCCAAGGAAGTATCCGACAGCTATAAGAACGCCTGGAAACCCCTGTATTGTGTATGCGTGTGTGTGTGTGTTTGCGAGAGACAGTAGTAGCCGTGTGTAGTGTTCAGGGTTTGTTTTTAGTGGTTCGTTTTGTTTTTATCGGCTCTTCTGCTTTCTTATTATAAGCTTGTGTT] [+] EMBL BM657266 [CCGCCCACGCGTCCGCCGACATATAAATTACCATCCAAACGGCGCACGGCACTGTGTGGGCGTGTATTTGAACGGAACAACAGCGGGGAAAGATTTCGGTTCGAATTGTTTGAACGGGGGTTTCTTCGTGCGACCGGCAAACCCCTTTGAAAAGCACACAAATGCTGCGATCATCATTTTGTACGCCGCCCACCCCCTACAACAGTGCATCATCATCCTCTCCTGCCAACGATTTTCTGGTGCTTTCGGTGCACGAGATGCGGCGTTTTTGTTTTACGTTACTCCGGCGCGCAAGTCAAGCTTATTATACATATATTAACATATATATATTTTTTTGTGTACATTTGTAAACTTATTAATGCATTATATGTTAAGGCGGAGAATGGCGGAGAGATAGGAGATAGCAGCGCGCAAAAGGAAGCCTAGCAGACGACGAAGAAAAAAAAAAAGAAGCAAGCTGAAGCAAAAATAGTGTCCATGAGTCGTGCAGACGAAAAAGGGGAAAGGTGTGTTGCTGTGATGAGACAGGAGGAAGGAACAAAAAACAAAAG AAAAAACGC ATATATATAGGGCAATAGTATACAGGAAACTGAAACAGAAATGCAAAACAAATCACTCGCAAGCGATAGGAGTGGATAGGGATGACAGGGGGGATGCCGCGCAATTACACTTACAGGGGTTTTCTAGGTGTTCTC ] [+] EMBL BM619332 [ ccgcTCGTGCAGACGAAAAAGGGGAAAGGTGTGTTGCTGTGATGAGACAGGAGGAAGGAACAAAAAACAAAAGAAAAAAAACGCATATATATATAGGGCAATAGTATACAGGAAACAGAAAC AAATGCAAAACAAATCACTCGCAAGCGATAGGAGTGGATAGGGATGACAGGGGGGATGCCGCGCAATTACACTTACA GGGTTTTCTAGGTGTTCTAATAGCTGTGGGACACTTTTTTTTACTCTTTCTAACGTAAAAAATGAATTTAATGTACATGAATTTAATGTACATGAACTTAATATAATGAGAATTGGACTCTATAGCACCCTCGTTAGACAAGTCCAATAGGAATGTTCAAGCAGCCTGTCCAATTTCAAACATATGAAGTTCACTTCCAATAAGAAAGAGCCAAGGAAGTATCCGACAGCTATAAGAACGCCTGGAAACCCCTGTATTGTGTATGCGTGTGTGTGTGTGTTTGCGAGAGACAGTAGTAGCCGTGTGTAGTGTTCAGGGTTTGTTTTTAGTGGTTCGTTTTGTTTTTATCGGCTCTTCTGCTTTCTTATTATAAGCTTGTGTT] consensusID : consensus_6179#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 780 fasta sequence [GACCCACGCGTCCGCGACGAAGCAGCAGGTGCGGCCAACGAATCGAAAAACGAAATCAAGAAAATACGTGCAATGTCGAAAACATCGAGGCAAGCGGAATTGAAAAGACTGAGAATTGCTCAAGAGATACAACGAGAACAGGCCGAGATAGACGTCAAGATCAAGGATCTGGAGACGCGCGGCGTCGCGATCGAGAAGGAGCTGCGGGGCGAAAGTGAGGCGCTGCGGCAGCACGGGCCCGCCGCCAATCTCGGCGCGAACGACGAGGGGCTGGTGAAGGAGTGGCTGGAAATCATGAGCAGCATCACGCGGCTGAAGGTGCGGGACGACGAGCTGAGCATACGGCAGCAGGAGCTGCAGCTCGAGCATCGGCACGCCCAGCTAAAGGAGGAGCTCAACATGCGGTTGTCATACGGCAAGCTAGATAAGAACTCTTCCGACGTGGCGGCCGAGGGCGCGATACTGAACGAGATGCTCGAGATCGTGGCGAAGCGGCAGTCGCTCAGACCGTCGCCCGACACCAAGGCGACCGCGGCGGCGGTCGCCGCCGTTGCGGCCGGTGCCGCCAGCAGCCCCTTCACCAACCCGACCGGCCGGAAGCCGACCGATACCGACATATAAATTACCATCCAAACGGCGCACGGCACTGTGTGGGCGTGTATTTGAACGGAACAACAGCGGGGAAAGATTTCGGTTCGAATTGTTTGAACGGGGGTTTCTTCGTGCGACCGGCAAACCCCTTTGAAAAGCACACAAATGCTGCGATCATCATTTTGTACG] [+] EMBL BM649217 [GACCCACGCGTCCGCGACGAAGCAGCAGGTGCGGCCAACGAATCGAAAAACGAAATCAAGAAAATACGTGCAATGTCGAAAACATCGAGGCAAGCGGAATTGAAAAGACTGAGAATTGCTCAAGAGATACAACGAGAACAGGCCGAGATAGACGTCAAGATCAAGGATCTGGAGACGCGCGGCGTCGCGATCGAGAAGGAGCTGCGGGGCGAAAGTGAGGCGCTGCGGCAGCACGGGCCCGCCGCCAATCTCGGCGCGAACGACGAGGGGCTGGTGAAGGAGTGGCTGGAAATCATGAGCAGCATCACGCGGCTGAAGGTGCGGGACGACGAGCTGAGCATACGGCAGCAGGAGCTGCAGCTCGAGCATCGGCACGCCCAGCTAAAGGAGGAGCTCAACATGCGGTTGTCATACGGCAAGCTAGATAAGAACTCTTCCGACGTGGCGGCCGAGGGCGCGATACTGAACGAGATGCTCGAGATCGTGGCGAAGCGGCAGTCGCTCAGACCGTCGCCCGACACCAAGGCGACCGCGGCGGCGGTCGCCGCCGTTGCGGCCGGTGCCGCCAGCAGCCCCTTCACCAACCCGACCGGCCGGAAGCCGACCGAT ] [+] EMBL BM584617 [ ccgAGACGTCAAGATCAAGGATCTGGAGACGCGCGGCGTCGCGATCGAGAAGGAGCTGCGGGGCGAAAGTGAGGCGCTGCGGCAGCACGGGCCCGCCGCCAATCTCGGCGCGAACGACGAGGGGCTGGTGAAGGAGTGGCTGGAAATCATGAGCAGCATCACGCGGCTGAAGGTGCGGGACGACGAGCTGAGCATACGGCAGCAGGAGCTGCAGCTCGAGCATCGGCACGCCCAGCTAAAGGAGGAGCTCAACATGCGGTTGTCATACGGCAAGCTAGATAAGAACTCTTCCGACGTGGCGGCCGAGGGCGCGATACTGAACGAGATGCTCGAGATCGTGGCGAAGCGGCAGTCGCTCAGACCGTCGCCCGACACCAAGGCGACCGCGGCGGCGGTCGCCGCCGTTGCGGCCGGTGCCGCCAGCAGCCCCTTCACCAACCCGACCGGCCGGAAGCCGAACGATACCGACATATAAATTACCATCCAAACGGCGCACGGCACTGTGTGGGCGTGTATTTGAACGGAACAACAGCGGGGAAAGATTTCGGTTCGAATTGTTTGAACGGGGGTTTCTTCGTGCGACCGGCAAACCCCTTTGAAAAGCACACAAATGCTGCGATCATCATTTTGTACG] consensusID : consensus_6179#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 691 fasta sequence [CAATCTCGGCGCGAACGACGAGGGGCTGGTGAAGGAGTGGCTGNNAAATCATGAGCAGCATCACGCGGCTGAAGGTGCGGGACGACGAGCTGAGCATACGGCAGCAGGAGCTGCAGCTCGAGCATCGGCACGCCCAGNCTAAAGGAGGAGCTCAACATGCGGTTGTCATACGGCAAGCTAGATAAGAACTCTTCCGACGTGGCGGCCGAGGGCGCGATACTGAACGAGATGCTCGAGATCGTGGCGAAGCGGCAGTCGCTCAGACCGTCGCCCGACACCAAGGCGACCGCGGCGGCGGTCGCCGCCGTTGCGGCCGGTGCCGCCAGCAGCCCCTTCACCAACCCGACCGGCCGGAAGCCGAACGATACCGACGTAAGCATTGCACGACTCTTTCCTTTCCCACTTCTTACCCGCTCCCCGCTGCTGCTGTGGTCGTTGCTGGCCGGCTGCTTGGCGGTAGCGGTGCTGGCCATTGCCGTTACGCTAACAAGCTAAACAACGTTTCGTTTTTTGCACTGCGCGCGAGTGTGTGTGTGTGGGTGTGGGTAACTCCGACACCTATACCAACAGCAGCACCACTTACCTATTTGCACTTGTAGATATGTTATGTTGCACACGCAAATTCAAGTTATTTCAAGTTGTATAATCAAAACAGAGTAGTTTTTGTCCACGCATCCTGCCCACACAGAGT] [+] EMBL BX623857 [CAATCTCGGCGCGAACGACGAGGGGCTGGTGAAGGAGTGGCTGNNAAATCATGAGCAGCATCACGCGGCTGAAGGTGCGGGACGACGAGCTGAGCATACGGCAGCAGGAGCTGCAGCTCGAGCATCGGCACGCCCAGNCTAAAGGAGGAGCTCAACATGCGGTTGTCATACGGCAAGCTAGATAAGAACTCTTCCGACGTGGCGGCCGAGGGCGCGATACTGAACGAGATGCTCGAGATCGTGGCGAAGCGGCAGTCGCTCAGACCGTCGCCCGACACCAAGGCGACCGCGGCGGCGGTCGCCGCCGTTGCGGCCGGTGCCGCCAGCAGCCCCTTCACCAACCCGACCGGCCGGAAGCCGAACGATACCGACGTAAGCATTGCACGACTCTTTCCTTTCCCACTTCTTACCCGCTCCCCGCTGCTGCTGTGGTCGTTGCTGGCCGGCTGCTTGGCGGTAGCGGTGCTGGCCATTGCCGTTACGCTAACAAGCTAAACAACGTTTCGTTTTTTGCACTGCGCGCGAGTGTGTGTGTGTGGGTGTGGGTAACTCCGACACCTATACCAACAGCAGCACCACTTACCTATTTGCACTTGTAGATATGTTATGTTGCACACGCAAATTCAAGTTATTTCAAGTTGTATAATCAAAACAGAGTAGTTTTTGTCCACGCATCCTGCCCACACAGAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6179#1 ----------------------------------------------------------GA 2 consensus_6179#2 ------------------------------------------------------------ consensus_6179#0 CCGCCCACGCGTCCGCCGACATATAAATTACCATCCAAACGGCGCACGGCACTGTGTGGG 60 consensus_6179#1 CCCACGCGTCCGCGACGAAGCAGCAGGTGCGGCCAACGAATCGAAAAACGAAATCAAGAA 62 consensus_6179#2 ------------------------------------------------------------ consensus_6179#0 CGTGTATTTGAACGGAACAACAGCGGGGAAAGATTTCGGTTCGAATTGTTTGAACGGGGG 120 consensus_6179#1 AATACGTGCAATGTCGAAAA----CATCGAGGCAAGCGGAATTGAAAAGACTGAGAATT- 117 consensus_6179#2 ------------------------------------------------------------ consensus_6179#0 TTTCTTCGTGCGACCGGCAAACCCCTTTGAAAAGCACACAAATGCTGCGATCATCATTTT 180 consensus_6179#1 -------GCTCAAGAGATACAACG----AGAACAGGCCGAGATAGACGTCAAGATCAAGG 166 consensus_6179#2 ------------------------------------------------------------ consensus_6179#0 GTACGCCGCCCACCCCCTACAACAGTGCATCATCATCCTCTCCTGCCAACGATTTTCTGG 240 consensus_6179#1 A--TCTGGAGACGCGCGGCGTCGCGATCGAG----AAGGAGCTGCGGGGCGAAAGTGAGG 220 consensus_6179#2 ------------------------------------------------------------ consensus_6179#0 TGCTTTCGGTGCACGAGATGCGGCGTTTTTGTTTTACGTTACTCCGGCGCGCAAGTCAAG 300 consensus_6179#1 CGCTGCGGCAGCACGGGCCCGCCGCCA-ATCTCGGCGCGAACGACGAGGGGCTGGTGAA- 278 consensus_6179#2 -------------------------CA-ATCTCGGCGCGAACGACGAGGGGCTGGTGAA- 33 consensus_6179#0 CTTATTATACATATATTAACATATATATATTTTTTTGTGTACATTTGTAAACTTATTAAT 360 * ** * * * ** ** * ** consensus_6179#1 -------------------GGAGTGGCTGGAAA-TCATGAGCAGCATCACGCGGCTGAAG 318 consensus_6179#2 -------------------GGAGTGGCTGNNAAATCATGAGCAGCATCACGCGGCTGAAG 74 consensus_6179#0 GCATTATATGTTAAGGCGGAGAATGGCGGAGAGATAGGAGATAGCAGCGCGCAAAAGGAA 420 ** **** * * * **** * *** * * consensus_6179#1 GTGCGG--GACGACGA-GCTGAGCATACGGCAGCAGGA-GCTGCAGCTCGAGCATCGGCA 374 consensus_6179#2 GTGCGG--GACGACGA-GCTGAGCATACGGCAGCAGGA-GCTGCAGCTCGAGCATCGGCA 130 consensus_6179#0 GCCTAGCAGACGACGAAGAAAAAAAAAAAGAAGCAAGCTGAAGCAAAAATAGTGTCCATG 480 * * ******** * * * * * **** * * *** ** ** consensus_6179#1 CGCCCAGC---TAAAGGAGGAGCTCAACATGCGGTTGTCAT---ACGGCAAGCTAGATAA 428 consensus_6179#2 CGCCCAGNC--TAAAGGAGGAGCTCAACATGCGGTTGTCAT---ACGGCAAGCTAGATAA 185 consensus_6179#0 AGTCGTGCAGACGAAAAAGGGGAAAGGTGTGTTGCTGTGATGAGACAGGAGGAAGGAACA 540 * * * ** *** * ** * *** ** ** * * * ** * consensus_6179#1 GAACTCTTCCGACGTGGCGGCCG---AGGGCGCGATACTGAACGAGATGCTCGAGATCGT 485 consensus_6179#2 GAACTCTTCCGACGTGGCGGCCG---AGGGCGCGATACTGAACGAGATGCTCGAGATCGT 242 consensus_6179#0 AAAAACAAAAGAAAAAACGCATATATATAGGGCAATAGTATACAGGAAACT-GAAACAGA 599 ** * ** ** * * ** *** * ** ** ** ** * * consensus_6179#1 GGCGAAGCGGCAGTCGCTCA-GACCGTCGCCCGACACCAAGGCGACCGCGGCGGCGGTCG 544 consensus_6179#2 GGCGAAGCGGCAGTCGCTCA-GACCGTCGCCCGACACCAAGGCGACCGCGGCGGCGGTCG 301 consensus_6179#0 AATGCAAAACAAATCACTCGCAAGCGATAGGAGTGGATAGGGATGACAGGGGGGATGCCG 659 * * * ** *** * ** * * ** * ** ** * ** consensus_6179#1 CCGCCGTTGCGGCCGGTGCCGCCAGCAGCCCCTTCACCAACCCGACCGGC-CGGAAGCCG 603 consensus_6179#2 CCGCCGTTGCGGCCGGTGCCGCCAGCAGCCCCTTCACCAACCCGACCGGC-CGGAAGCCG 360 consensus_6179#0 C-GCAATTACACTTACAGGGGTTTTCTAGGTGTTCTCATAGCTGTGGGACACTTTTTTTT 718 * ** ** * * * * *** * * * * * * * consensus_6179#1 ACCGATACCGACATATAAATTAC-------------------CATCCAAACGGCGCACGG 644 consensus_6179#2 AACGATACCGACGTAAGCATTGCACGACTCTTTCCTTTCCCACTTCTTACCCGCTCCCCG 420 consensus_6179#0 ACTCTTTCTAACGTAAAAAATGAAT---------TTAATGTACATGAATTTAATGTACAT 769 * * * ** ** * * * * * consensus_6179#1 C-ACTG-TGTGGGCGT--GTATTTGAACGG--AACAACAGCGGGGAAAG--ATTTCGGTT 696 consensus_6179#2 CTGCTGCTGTGGTCGTTGCTGGCCGGCTGCTTGGCGGTAGCGGTGCTGGCCATTGCCGTT 480 consensus_6179#0 GAACT--TAATATAATGAGAATTGGACTCTATAGCACCCTCGTTAGACA--AGTCCAATA 825 ** * * * * ** * * * * consensus_6179#1 ---CGAATTGTTTGAACGGGGGTT---TCTTCGTGCGACCGGCAAACCCCTTTGAAAAGC 750 consensus_6179#2 ACGCTAACAAGCTAAACAACGTTTCGTTTTTTGCACTGCGCGCGAGTGTGTGTGTGTGG- 539 consensus_6179#0 ----GGAATGTTCAAGCAGCCTGTCCAATTTCAAACATATGAAGTTCACTTCCAATAAGA 881 * * * * ** * * * consensus_6179#1 A-----CACAAATGCTGCGATCATCATTTTGTACG------------------------- 780 consensus_6179#2 G-----TGTGGGTAACTCCGACACCTATACCAACAGCAGCACCACTTACCTATTTGCACT 594 consensus_6179#0 AAGAGCCAAGGAAGTATCCGACAGCTATAAGAACGCCTGGAAACCCCTGTATTGTGTATG 941 * ** * * ** consensus_6179#1 ------------------------------------------------------------ consensus_6179#2 TGTAGATATGTTATGTTGCACACGCAAATTCAAGTTATTTCAAGTTGTATAATCAAAACA 654 consensus_6179#0 CGTGTGTGTGTGTGTTTGCGAGAGACAGTAGTAGCCGTGTGTAGTGTTCAGGGTTTGTTT 1001 consensus_6179#1 --------------------------------------------------------- consensus_6179#2 GAGTAGTTTTTGTCCACGCATCCTGCCCACACAGAGT-------------------- 691 consensus_6179#0 TTAGTGGTTCGTTTTGTTTTTATCGGCTCTTCTGCTTTCTTATTATAAGCTTGTGTT 1058 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||