These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6181#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 651 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGATGAATTCTTTTCGTCGCTGTTCAAAAACACTTTTGCAAACCTTGCTAAACGCAAATATTGCTGGCAGCGGTCCGGGTCGTGTATTTACTCGATCACAATGCTACAAAGCTGTTAACAGACGTGCAATAACGGAGCTTAAAAATCTGCGGCGTGATCCACCGAA-GAACCTGCCGGCAATTCCGACCGAAGAACGTTGGCCGAAGCATTGCACGGCCGGATACGAGCTACCGGGCCAATGACGGTGGCCACTTATATGCGAGAAGTTTTGCTTAACCCAGCGGCTGGATACTACAGTACAAAGGAGAATGTGTTTGGGACAACTGGAGATTTCATCACCGCGCCGGAAATTGGACAAATTTTCGGCGAGCTGGTAGCCATTTGGTGTATAAATGAGTTACAAAAATTTAACTATGATGGCCATATACAGCTCATCGAGCTAGGACCTGGCAAGGGAACGCTGATGCACGATGTGCTGCGCGTATTCGAACGATTCGGGCTGTCCAAAGATCGAGTTAGTGTGCATCTGGTGGAAATGAGCTCCAATTTGCAGCGCCTTCAGGCCGACAAGCTTTGCAACGGGATGGCCCACCGTACACCGGCGGACCAAAGTGAACCTCACGTA] [+] EMBL BM617008 [CCGCCCACGCGTCCGCCCACGCGTCCGGATGAATTCTTTTCGTCGCTGTTCAAAAACACTTTTGCAAACCTTGCTAAACGCAAATATTGCTGGCAGCGGTCCGGGTCGTGTATTTACTCGATCACAATGCTACAAAGCTGTTAACAGACGTGCAATAACGGAGCTGAAAAATCTGCGGCGTGATCCACCGAAGGAACCTGCCGGCAATTCCGACCGAAGAACGTTGGCCGAAGCATTGCACGGCCGGATACGAGCTACCGGGCCAATGACGGTGGCCACTTATATGCGAGAAGTTTTGCTTAACCCAGCGGCTGGATACTACAGTACAAAGGAGAATGTGTTTGGGACAACTGGAGATTTCATCACCGCGCCGGAAATTGGACAAATTTTCGGCGAGCTGGTAGCCATTTGGTGTATAAATGAGTTACAAAAATTTAACTATGATGGCCATATACAGCTCATCGAGCTAGGACCTGGCAAGGGAACGCTGATGCACGATGTGCTGCGCGTATTCGAACGATTCGGGCTGTCCAAAGATCGAGTTAGTGTGCATCTGGTGGAAATGAGCTCCAATTTGCAGCGCCTTCAGGCCGACAAGCTTTGCAACGGGATGGCCCACCGTACACCGGCGGACCAAAGTGAACCTCACGTA] [+] EMBL CNS09E8O [ ACAAAGCTGTTAACAGACGTGCAATAACGGAGCTTAAAAATCTGCGGCGTGATCCACCGAA GAACCTGCCGGCAATTCCGACCGAAGAACGTTGGCCGAAGCATTGCACGGCCGGATACGAGCTACCGGGCCAATGACGGTGGCCACTTATATGCGAGAAGTTTTGCTTAACCCAGCGGCTGGATACTACAGTACAAAGGAGAATGTGTTTGGGACAACTGGAGATTTCATCACCGCGCCGGAAATTGGACAAATTTTCGGCGAGCTGGTAGCCATTTGGTGTATAAATGAGTTACAAAAATTTAACTATGATGGCCATATACAGCTCATCGGGCTAGGACCTGGCAAGGGAACGCTGATGC ] [+] EMBL CNS09A3O [ ACAAAGCTGTTAACAGACGTGCAATAACGGAGCTTAAAAATCTGCGGCGTGATCCACCGAA GAACCTGCCGGCAATTCCGACCGAAGAACGTTGGCCGAAGCATTGCACGGCCGGATACGAGCTACCGGGCCAATGACGGTGGCCACTTATATGCGAGAAGTTTTGCTTAACCCAGCGGCTGGATACTACAGTACAAAGGAGAATGTGTTTGGGACAACTGGAGATTTCATCACCGCGCCGGAAATTGGACAAATTTTCGGCGAGCTGGTAGCCATTTGGTGTATAAATGAGTTACAAAAATTTAACTATGATGGCCATATACAGCTCATCGAGCTAGGACCTGGCA ] [+] EMBL CNS098J0 [ ACAAAGCTGTTAACAGACGTGCAATAACGGAGCTTAAAAATCTGCGGCGTGATCCACCGAA GAACCTGCCGGCAAT ] consensusID : consensus_6181#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 547 fasta sequence [ATCGCACGAGGTGTCACGAGATGAATTCTTTTCGTCCNCTGTTCACAAAACACTTTTGCAACCTTGCTAAACGCAAATATTGCTGGCAGCGGCCCGGGTCGTGTATTTACTCGATCACAATGCTACAAAGCTGTTAACAGACGTGCAATAACGGAGGCTGAAAAATCTGCGGCGTGATCCACCGAAGGAACCTGGCGGNAAATTCCGACCGAAGAACGGTTGCCGAAGCATTTGCCACGGGCCGGAATACGAGCTACCGGGGCAATNNACGGTGGCACTTATATGCGCAGGAAGTTTTGCGTTAANCCAGACGGGCTGGATACTACAGTACACAAGGACGAATGTGTTTGGGACANACTGGAGATTTCATCACCGGGCCGGGAAATTGGACAAATTTTCGGCGGAGACATGGTAGCCNTTTGGTGTATAAATGAGGTTACACAAGACAGTTTAACGCTCATGATAGGCCATATAACAGGTCACTCGAGCTAGGACCTGGCAAGGGAACGCTGATAGCACGATGGTGCTGCGCGTATTCGGAACGATT] [+] EMBL BX469540 [ATCGCACGAGGTGTCACGAGATGAATTCTTTTCGTCCNCTGTTCACAAAACACTTTTGCAACCTTGCTAAACGCAAATATTGCTGGCAGCGGCCCGGGTCGTGTATTTACTCGATCACAATGCTACAAAGCTGTTAACAGACGTGCAATAACGGAGGCTGAAAAATCTGCGGCGTGATCCACCGAAGGAACCTGGCGGNAAATTCCGACCGAAGAACGGTTGCCGAAGCATTTGCCACGGGCCGGAATACGAGCTACCGGGGCAATNNACGGTGGCACTTATATGCGCAGGAAGTTTTGCGTTAANCCAGACGGGCTGGATACTACAGTACACAAGGACGAATGTGTTTGGGACANACTGGAGATTTCATCACCGGGCCGGGAAATTGGACAAATTTTCGGCGGAGACATGGTAGCCNTTTGGTGTATAAATGAGGTTACACAAGACAGTTTAACGCTCATGATAGGCCATATAACAGGTCACTCGAGCTAGGACCTGGCAAGGGAACGCTGATAGCACGATGGTGCTGCGCGTATTCGGAACGATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6181#0 CCGCCCACGCGTCCGCCCACGCGTCC--GGATGAATTCTTTTCGTC-GCTGTTCA-AAAA 56 consensus_6181#1 ----------ATCGCACGAGGTGTCACGAGATGAATTCTTTTCGTCCNCTGTTCACAAAA 50 ** * * * *** ***************** ******* **** consensus_6181#0 CACTTTTGCAAACCTTGCTAAACGCAAATATTGCTGGCAGCGGTCCGGGTCGTGTATTTA 116 consensus_6181#1 CACTTTTGCAA-CCTTGCTAAACGCAAATATTGCTGGCAGCGGCCCGGGTCGTGTATTTA 109 *********** ******************************* **************** consensus_6181#0 CTCGATCACAATGCTACAAAGCTGTTAACAGACGTGCAATAACGGAG-CTTAAAAATCTG 175 consensus_6181#1 CTCGATCACAATGCTACAAAGCTGTTAACAGACGTGCAATAACGGAGGCTGAAAAATCTG 169 *********************************************** ** ********* consensus_6181#0 CGGCGTGATCCACCGAAG-AACCTGCCGGCAA-TTCCGACCGAAGAACGTTGGCCGAAGC 233 consensus_6181#1 CGGCGTGATCCACCGAAGGAACCTGGCGGNAAATTCCGACCGAAGAACGGTTGCCGAAGC 229 ****************** ****** *** ** **************** * ******** consensus_6181#0 ATTG--CACGGCC--GGATACGAGCTACCGGGCCAATGA-CGGTGGCCACTTATATGCG- 287 consensus_6181#1 ATTTGCCACGGGCCGGAATACGAGCTACCGGGGCAATNNACGGTGGC-ACTTATATGCGC 288 *** ***** * * *************** **** ******* *********** consensus_6181#0 -AGAAGTTTTGC-TTAACCCAGC--GGCTGGATACTACAGTACA-AAGGA-GAATGTGTT 341 consensus_6181#1 AGGAAGTTTTGCGTTAANCCAGACGGGCTGGATACTACAGTACACAAGGACGAATGTGTT 348 ********** **** **** ******************* ***** ********* consensus_6181#0 TGGGACAA-CTGGAGATTTCATCACCGCGCCGG-AAATTGGACAAATTTTCGGCGAGC-- 397 consensus_6181#1 TGGGACANACTGGAGATTTCATCACCGGGCCGGGAAATTGGACAAATTTTCGGCGGAGAC 408 ******* ****************** ***** ********************* consensus_6181#0 -TGGTAGCCATTTGGTGTATAAATGAG-TTACAAAAA----TTTAAC---TATGAT-GGC 447 consensus_6181#1 ATGGTAGCCNTTTGGTGTATAAATGAGGTTACACAAGACAGTTTAACGCTCATGATAGGC 468 ******** ***************** ***** ** ****** ***** *** consensus_6181#0 CATATA-CAGCTCA-TCGAGCTAGGACCTGGCAAGGGAACGCTGAT-GCACGATG-TGCT 503 consensus_6181#1 CATATAACAGGTCACTCGAGCTAGGACCTGGCAAGGGAACGCTGATAGCACGATGGTGCT 528 ****** *** *** ******************************* ******** **** consensus_6181#0 GCGCGTATTCG-AACGATTCGGGCTGTCCAAAGATCGAGTTAGTGTGCATCTGGTGGAAA 562 consensus_6181#1 GCGCGTATTCGGAACGATT----------------------------------------- 547 *********** ******* consensus_6181#0 TGAGCTCCAATTTGCAGCGCCTTCAGGCCGACAAGCTTTGCAACGGGATGGCCCACCGTA 622 consensus_6181#1 ------------------------------------------------------------ consensus_6181#0 CACCGGCGGACCAAAGTGAACCTCACGTA 651 consensus_6181#1 ----------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||