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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6194#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1759 fasta sequence
[CCGCGGACGCGTGGGCAGGCAGCGAAGAGATCGAGCTGAACCGCCTGTCGGCCGCAACTCCGCTGCAAAACTTTGTCCCCTCAACGATACGATTTCGCAATGTAGTCTACAGGACAAATGAGAAAGAAATATTGGGCAACGTGTCGGGACGCTTCCAACATGGTCGTCTAGTGGCGCTCATGGGACCTTCAGGCGCGGGCAAGTCTTCGCTCCTGAACGTACTGTCCGGTGCGCAAGTGTTCGGCATGATCGGTACCGTCACGATCAACGGTGAGCCGGTGGAAGAGAACGATCCACGCAGCGTGTACGTCGAGCAGGAGTGTCCACTGCTGGCGTTTCTCACCGTCCAGGAAACGATGCAGTTTGCCGTGGACATGAAGATGCCGCAGAGTTCCCCGAAATCGGCCAAGCAGGCCAAAATTGATGATATTCTGGAGATGGTCGGTTTGGATACGGCTCGAAACACGGTCGTTCGCAGTCTGTCCGGGGGCGAGCAGCGCCGACTGGCGGTTGCTGTTGAGCTGATCACCAATCCACCGATAATGCTGTTCGACGAGCCAACGAGCGGGCTGGACAGTGTGTCGTCGACGCAGGTGATTGCACATCTAAAATCGTTGGCGATGAGTGGCCGTACAATCGTTTGTACGAT-CCACCAGCCGGCTTCAAGTCTATTCCAGCTGTTCGACGATGTGTATCTGCTACGGCAGGGACGCTGTTTGTATGCTGGGCCAGTTGAGCAGATGCTTACACGGTTTGCCCGGGTTGGATTGCGCTGTCCGGAGTATTACAATCCGGCCGATTTTGCGCTGGAATCGATATCGGCCAACCAGCCGGAAGCGCACCGGATGCTGTGCCAGCTGGTGGACGAGGAGATGCGGGAAGTTAATGCGGGTGCACCGTCCAGCCCGACGACGCTCGCTGCTCAGCTCGGACAGGGTGGGAAGAGGATTGCTCGTTATCAGACAGCTGGCTATTATCAGTTGTACACACTGTTGAAGCGATCGGTAGTGTCGTCGGCGAGGGATGAGTTTTTCCTCAAGATTCGACTCGGTATGCATCTGGCGCTGGGGCTCGTCTTCGTTGCGGTACACTATGATGCTGGGTCGGATGCGGCCAAGGTGCTGGCAAACGTTGGTTGCTTCTTCCAGCTGGTTGCCTTCGTGTATTTTACGAACGCAGTGTCGGTGGTTAACTATGCGGATGAGGTGAGCGTCGCGATCAAGGAAATCGCCAACAACTGGTACAGCCGGGAGGCGTACTTCGCCGCCAAGCTGATCCACGACCTACCGCTCCAGCTGTTCTGTCCCTCGTTTCTGCTCGCGATCGTGTACTACCTAACCGGCCAGCCGCTCGAGTGGGCCCGGTTCGGCATGCTGCTCGGTGTGTTCGCGATCGGTGGCGTCATCGGTCAAAGCCTGGGCCTGATCGGGGGCATCTGTTTCGAGGTGAAGATGCAAAACTTTTTCGTAGCGAACGCGTGCATCGTACCGATACTGTTTTCGGGCTTCTTTGTCAATGCGGGCGACATGATAGCGATCCTGCGACCGCTCAGTACGGTGTCGTTCTTTCGGTACCAGTTCCACGGCGCGATGCAGGCACTGTACGGGTACGATCGGGGTAATATACCGTGCGGACAGGTGTACTGCTATTACAAGAAACCGACCACGCTGCTGGAGCAGTTCGATATCGACGAGTACGGGTATGGGACGAGCATTGCGAAGGCGTTAGTGTTGGTGCTGATAATGCAGCTGATAATTTA]
[+] EMBL BM634936 [CCGCGGACGCGTGGGCAGGCAGCGAAGAGATCGAGCTGAACCGCCTGTCGGCCGCAACTCCGCTGCAAAACTTTGTCCCCTCAACGATACGATTTCGCAATGTAGTCTACAGGACAAATGAGAAAGAAATATTGGGCAACGTGTCGGGACGCTTCCAACATGGTCGTCTAGTGGCGCTCATGGGACCTTCAGGCGCGGGCAAGTCTTCGCTCCTGAACGTACTGTCCGGTGCGCAAGTGTTCGGCATGATCGGTACCGTCACGATCAACGGTGAGCCGGTGGAAGAGAACGATCCACGCAGCGTGTACGTCGAGCAGGAGTGTCCACTGCTGGCGTTTCTCACCGTCCAGGAAACGATGCAGTTTGCCGTGGACATGAAGATGCCGCAGAGTTCCCCGAAATCGGCCAAGCAGGCCAAAATTGATGATATTCTGGAGATGGTCGGTTTGGATACGGCTCGAAACACGGTCGTTCGCAGTCTGTCCGGGGGCGAGCAGCGCCGACTGGCGGTTGCTGTTGAGCTGATCACCAATCCACCGATAATGCTGTTCGACGAGCCAACGAGCGGGCTGGACAGTGTGTCGTCGACGCAGGTGATTGCACATCTAAAATCGTTGGCGATGAGTGGCCGTACAATCGTTTGTACGATCCCACCAGCC ]
[+] EMBL BM639730 [ ccgGTTCGACGAGCCAACGAGCGGGCTGGACAGTGTGTCGTCGACGCAGGTGATTGCACATCTAAAATCGTTGGCGATGAGTGGCCGTACAATCGTTTGTACGAT CCACCAGCCGGCTTCAAGTCTATTCCAGCTGTTCGACGATGTGTATCTGCTACGGCAGGGACGCTGTTTGTATGCTGGGCCAGTTGAGCAGATGCTTACACGGTTTGCCCGGGTTGGATTGCGCTGTCCGGAGTATTACAATCCGGCCGATTTTGCGCTGGAATCGATATCGGCCAACCAGCCGGAAGCGCACCGGATGCTGTGCCAGCTGGTGGACGAGGAGATGCGGGAAGTTAATGCGGGTGCACCGTCCAGCCCGACGACGCTCGCTGCTCAGCTCGGACAGGGTGGGAAGAGGATTGCTCGTTATCAGACAGCTGGCTATTATCAGTTGTACACACTGTTGAAGCGATCGGTAGTGTCGTCGGCGAGGGATGAGTTTTTCCTCAAGATTCGACTCGGTATGCATCTGGCGCTGGGGCTCGTCTTCGTTGCGGTACACTATGATGCTGGGTCGGATGCGGCCAAGGTGCTGGCAAACGTTGGTTGCTTCTTCCAGCTGGTTGCCTTCGTGTATT ]
[+] EMBL BM639960 [ ccgcGGAC GCGGGGCGTCGACGCAGGTGATTGCACACCTAAAATCGATGGCGATGAGTGGCCGTACAATCGTCTGTACGAT CCACCAGCCGGCTTCCAGTCTGTTCCAGCTGTTCGACGATGTGTATCTGCTGCGACAGGGACGCTGTTTGTATGCTGGGCCGGTTGAGCAGATGCTGACACGGTTTGCCCGGGTTGGATTGCGCTGTCCGGAGTATTACAATCCGGCCGATTTTGCGCTGGAATCGATATCGGCCAACCAGCCGGAAGCGCACCGGATGCTGTGCCAGCTGGTGGACGAGGAGATGCGGGAGGTTAATGCGGGTGC ]
[+] EMBL BM649413 [ ccgGCGGCCAAGGTGCTGGCAAACGTTGGTTGCTTCTTCCAGCTGTTTGCCTTCGTGTATTTTACGAACGCAGTGTCGGTGGTTAACTATGCGGATGAGGTGAGCGTCGCGATCAAGGAAATCGCCAACAACTGGTACAGCCGGGAGGCGTACTTCGCCGCCAAGCTGATCCACGACCTACCGCTCCAGCTGTTCTGTCCCTCGTTTCTGCTCGCGATCGTGTACTACCTAACCGGCCAGCCGCTCGAGTGGGCCCGGTTCGGCATGCTGCTCGGTGTGTTCGCGATCGGTGGCGTCATCGGTCAAAGCCTGGGCCTGATCGGGGGCATCTGTTTCGAGGTGAAGATGCAAAACTTTTTCGTAGCGAACGCGTGCATCGTACCGATACTGTTTTCGGGCTTCTTTGTCAATGCGGGCGACATGATAGCGATCCTGCGACCGCTCAGTACGGTGTCGTTCTTTCGGTACCAGTTCCACGGCGCGATGCAGGCACTGTACGGGTACGATCGGGGTAATATACCGTGCGGACAGGTGTACTGCTATTACAAGAAACCGACCACGCTGCTGGAGCAGTTCGATATCGACGAGTACGGGTATGGGACGAGCATTGCGAAGGCGTTAGTGTTGGTGCTGATAATGCAGCTGATAATTTA]
consensusID : consensus_6194#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 584 fasta sequence
[AATCCCCGAGGTTTAAAGAGATCGAGCTGAACGCCTGTCGGCCGCAACTCCGCTGCAAAACTTTGTCCCCTCAACGATACGATTTCGCAATGTGGTTTACAGGACAAATGAGAAAGAAATATTGGGCAATGTGTCGGGACGCTTCCAACATGGTCGTCTAGTGGCGCTCATGGGACCTTCCGGCGCGGGCAAGTCTTCACTCCTGAACGTACTGTCCGGTGCACAAGTGTTCGGCATGATCGGTACCGTCACGATCAACGGTGAGCCGGTGGAAGAAAACGATCCACGCAGCGTGTACGTCGAGCAGGAGTGTCCACTGCTGGCGTTTCTCACCGTCCAGGAAACGATGCAGTTTGCCGTGGACATGAAGATGCCGCAGAGTTCCCCGAAATCGGCAAGCAGGCCAAAATCGATGACATTCTGGAGATGGTCGGTTTGGATACGGCTCGAAACACAGTCGTTCGCAGTCTGTCCGGAGGTGAACAGCGTCGACTGGCGGTAGCGGTTGAGCTGATCACCAATCCACCGATAATGCTGTTCGACGAGCCAACGAGCGGGCTGGACAGTGTGTCGTCGACGCAGGT]
[+] EMBL AL693082 [AATCCCCGAGGTTTAAAGAGATCGAGCTGAACGCCTGTCGGCCGCAACTCCGCTGCAAAACTTTGTCCCCTCAACGATACGATTTCGCAATGTGGTTTACAGGACAAATGAGAAAGAAATATTGGGCAATGTGTCGGGACGCTTCCAACATGGTCGTCTAGTGGCGCTCATGGGACCTTCCGGCGCGGGCAAGTCTTCACTCCTGAACGTACTGTCCGGTGCACAAGTGTTCGGCATGATCGGTACCGTCACGATCAACGGTGAGCCGGTGGAAGAAAACGATCCACGCAGCGTGTACGTCGAGCAGGAGTGTCCACTGCTGGCGTTTCTCACCGTCCAGGAAACGATGCAGTTTGCCGTGGACATGAAGATGCCGCAGAGTTCCCCGAAATCGGCAAGCAGGCCAAAATCGATGACATTCTGGAGATGGTCGGTTTGGATACGGCTCGAAACACAGTCGTTCGCAGTCTGTCCGGAGGTGAACAGCGTCGACTGGCGGTAGCGGTTGAGCTGATCACCAATCCACCGATAATGCTGTTCGACGAGCCAACGAGCGGGCTGGACAGTGTGTCGTCGACGCAGGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6194#0 CCGCGGACGCGTGGGCAGGCAGCGAAGAGATCGAGCTGAACCGCCTGTCGGCCGCAACTC 60
consensus_6194#1 ---------AATCCCCGAGGTTTAAAGAGATCGAGCTGAAC-GCCTGTCGGCCGCAACTC 50
* * * ***************** ******************
consensus_6194#0 CGCTGCAAAACTTTGTCCCCTCAACGATACGATTTCGCAATGTAGTCTACAGGACAAATG 120
consensus_6194#1 CGCTGCAAAACTTTGTCCCCTCAACGATACGATTTCGCAATGTGGTTTACAGGACAAATG 110
******************************************* ** *************
consensus_6194#0 AGAAAGAAATATTGGGCAACGTGTCGGGACGCTTCCAACATGGTCGTCTAGTGGCGCTCA 180
consensus_6194#1 AGAAAGAAATATTGGGCAATGTGTCGGGACGCTTCCAACATGGTCGTCTAGTGGCGCTCA 170
******************* ****************************************
consensus_6194#0 TGGGACCTTCAGGCGCGGGCAAGTCTTCGCTCCTGAACGTACTGTCCGGTGCGCAAGTGT 240
consensus_6194#1 TGGGACCTTCCGGCGCGGGCAAGTCTTCACTCCTGAACGTACTGTCCGGTGCACAAGTGT 230
********** ***************** *********************** *******
consensus_6194#0 TCGGCATGATCGGTACCGTCACGATCAACGGTGAGCCGGTGGAAGAGAACGATCCACGCA 300
consensus_6194#1 TCGGCATGATCGGTACCGTCACGATCAACGGTGAGCCGGTGGAAGAAAACGATCCACGCA 290
********************************************** *************
consensus_6194#0 GCGTGTACGTCGAGCAGGAGTGTCCACTGCTGGCGTTTCTCACCGTCCAGGAAACGATGC 360
consensus_6194#1 GCGTGTACGTCGAGCAGGAGTGTCCACTGCTGGCGTTTCTCACCGTCCAGGAAACGATGC 350
************************************************************
consensus_6194#0 AGTTTGCCGTGGACATGAAGATGCCGCAGAGTTCCCCGAAATCGGCCAAGCAGGCCAAAA 420
consensus_6194#1 AGTTTGCCGTGGACATGAAGATGCCGCAGAGTTCCCCGAAATCGGC-AAGCAGGCCAAAA 409
********************************************** *************
consensus_6194#0 TTGATGATATTCTGGAGATGGTCGGTTTGGATACGGCTCGAAACACGGTCGTTCGCAGTC 480
consensus_6194#1 TCGATGACATTCTGGAGATGGTCGGTTTGGATACGGCTCGAAACACAGTCGTTCGCAGTC 469
* ***** ************************************** *************
consensus_6194#0 TGTCCGGGGGCGAGCAGCGCCGACTGGCGGTTGCTGTTGAGCTGATCACCAATCCACCGA 540
consensus_6194#1 TGTCCGGAGGTGAACAGCGTCGACTGGCGGTAGCGGTTGAGCTGATCACCAATCCACCGA 529
******* ** ** ***** *********** ** *************************
consensus_6194#0 TAATGCTGTTCGACGAGCCAACGAGCGGGCTGGACAGTGTGTCGTCGACGCAGGTGATTG 600
consensus_6194#1 TAATGCTGTTCGACGAGCCAACGAGCGGGCTGGACAGTGTGTCGTCGACGCAGGT----- 584
*******************************************************
consensus_6194#0 CACATCTAAAATCGTTGGCGATGAGTGGCCGTACAATCGTTTGTACGATCCACCAGCCGG 660
consensus_6194#1 ------------------------------------------------------------
consensus_6194#0 CTTCAAGTCTATTCCAGCTGTTCGACGATGTGTATCTGCTACGGCAGGGACGCTGTTTGT 720
consensus_6194#1 ------------------------------------------------------------
consensus_6194#0 ATGCTGGGCCAGTTGAGCAGATGCTTACACGGTTTGCCCGGGTTGGATTGCGCTGTCCGG 780
consensus_6194#1 ------------------------------------------------------------
consensus_6194#0 AGTATTACAATCCGGCCGATTTTGCGCTGGAATCGATATCGGCCAACCAGCCGGAAGCGC 840
consensus_6194#1 ------------------------------------------------------------
consensus_6194#0 ACCGGATGCTGTGCCAGCTGGTGGACGAGGAGATGCGGGAAGTTAATGCGGGTGCACCGT 900
consensus_6194#1 ------------------------------------------------------------
consensus_6194#0 CCAGCCCGACGACGCTCGCTGCTCAGCTCGGACAGGGTGGGAAGAGGATTGCTCGTTATC 960
consensus_6194#1 ------------------------------------------------------------
consensus_6194#0 AGACAGCTGGCTATTATCAGTTGTACACACTGTTGAAGCGATCGGTAGTGTCGTCGGCGA 1020
consensus_6194#1 ------------------------------------------------------------
consensus_6194#0 GGGATGAGTTTTTCCTCAAGATTCGACTCGGTATGCATCTGGCGCTGGGGCTCGTCTTCG 1080
consensus_6194#1 ------------------------------------------------------------
consensus_6194#0 TTGCGGTACACTATGATGCTGGGTCGGATGCGGCCAAGGTGCTGGCAAACGTTGGTTGCT 1140
consensus_6194#1 ------------------------------------------------------------
consensus_6194#0 TCTTCCAGCTGGTTGCCTTCGTGTATTTTACGAACGCAGTGTCGGTGGTTAACTATGCGG 1200
consensus_6194#1 ------------------------------------------------------------
consensus_6194#0 ATGAGGTGAGCGTCGCGATCAAGGAAATCGCCAACAACTGGTACAGCCGGGAGGCGTACT 1260
consensus_6194#1 ------------------------------------------------------------
consensus_6194#0 TCGCCGCCAAGCTGATCCACGACCTACCGCTCCAGCTGTTCTGTCCCTCGTTTCTGCTCG 1320
consensus_6194#1 ------------------------------------------------------------
consensus_6194#0 CGATCGTGTACTACCTAACCGGCCAGCCGCTCGAGTGGGCCCGGTTCGGCATGCTGCTCG 1380
consensus_6194#1 ------------------------------------------------------------
consensus_6194#0 GTGTGTTCGCGATCGGTGGCGTCATCGGTCAAAGCCTGGGCCTGATCGGGGGCATCTGTT 1440
consensus_6194#1 ------------------------------------------------------------
consensus_6194#0 TCGAGGTGAAGATGCAAAACTTTTTCGTAGCGAACGCGTGCATCGTACCGATACTGTTTT 1500
consensus_6194#1 ------------------------------------------------------------
consensus_6194#0 CGGGCTTCTTTGTCAATGCGGGCGACATGATAGCGATCCTGCGACCGCTCAGTACGGTGT 1560
consensus_6194#1 ------------------------------------------------------------
consensus_6194#0 CGTTCTTTCGGTACCAGTTCCACGGCGCGATGCAGGCACTGTACGGGTACGATCGGGGTA 1620
consensus_6194#1 ------------------------------------------------------------
consensus_6194#0 ATATACCGTGCGGACAGGTGTACTGCTATTACAAGAAACCGACCACGCTGCTGGAGCAGT 1680
consensus_6194#1 ------------------------------------------------------------
consensus_6194#0 TCGATATCGACGAGTACGGGTATGGGACGAGCATTGCGAAGGCGTTAGTGTTGGTGCTGA 1740
consensus_6194#1 ------------------------------------------------------------
consensus_6194#0 TAATGCAGCTGATAATTTA 1759
consensus_6194#1 -------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||