cluster # 6195

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Anopheles gambiae
cluster # 6195 cluster # 6195 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6195#0 length = 1108 sequences # 4

consensus_6195#1 length = 517 sequences # 1

consensusID : consensus_6195#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1108
fasta sequence

                              [CGCCCCGAGGTTTCAAACGTATATTGTAGGAAAAGTTGTGAGATTTTATCCAAAAATTACCATACTATTTTACTAACTAGTTTACCTGATTTTAAAGCTCTTGTAATGAGTACAGGCGGCAGAAAATCGCTTACGCCAAATGCTGCTCCGGAAGGGCAAGCGGAACCAGCCTCCGTGCCACTGGGCGGTGCGATCGGTCGCGAGGACATTTGGGACGACAGTATTATCATCAAAAAGTATGACGCATCGCTGGCACTGATAAAGGCGGAAGTAGCGAAGCGGCTGGCCATGAACACGAACCGGGGCGGTCTGGCGGATGTGGCGGGCTGCAGCGGCCACAAGCCTCGCCGGCAGCAACACAAAGACAGCGATTCGACCGGAGGAGAAGCAACCGTCGGCACGCCGGAGCACGAGGAAAAGGGCGCGATGGAGATTTCTGAGCAGGAGCAGGGCACAGCGAACGGTCCACCAGCGACGGGCGCGTTCGAGATCGGTGACTATGTGCGAGCGACCTACGACGATGGGGTGGATTACGAGGCGAAAATCATTGGCTTTGGCAGCCATGGGGACTGTTTGATCCGGTACGTCGGGTACAACAACGAGCAGACGGTGTTGCTGGAGGAGCTGCTACCGTCCTGGGGGCGAAAAGGCACGGCGTCAGCAGCGCGTTGAGGCGGCCGAAGCGGAAGCTGCCGCTGCCGACTCGCAGATGGACATTAGCGATGACGAGCGGTTCACGAAGCAGGCCAGCAAGATCAAGATTAACTTCGGACCGAACTTCGGACGATCGAGTATGGGCCAGGCGGCCGGCGGCAGAAGTGGACGATCTGGCATGTTGGGCCCCAGCATGTCCACAGCATACATGGTTCCGCCACCTCCGCCGATGCCCCCGATGCTGGAAGACGCGGATGATGTCGAGTCGGAGAACCTGTCCGCCATGCTGATGTCGTGGTACATGAGCGGTTACTACACCGGGCTCTACCATGGCCAGCGGATGTCTCAGCAGCAGCAGCAACACACGCAGCAGAAGCGGGCACGACNATCGTAATTTTTGCTATGTTCGAGCGGAAACTGTANGGTTGCTGTCGTCNAGTTTTAACGANGAAAT]

[+] EMBL AL933232             [CGCCCCGAGGTTTCAAACGTATATTGTAGGAAAAGTTGTGAGATTTTATCCAAAAATTACCATACTATTTTACTAACTAGTTTACCTGATTTTAAAGCTCTTGTAATGAGTACAGGCGGCAGAAAATCGCTTACGCCAAATGCTGCTCCGGAAGGGCAAGCGGAACCAGCCTCCGTGCCACTGGGCGGTGCGATCGGTCGCGAGGACATTTGGGACGACAGTATTATCATCAAAAAGTATGACGCATCGCTGGCACTGATAAAGGCGGAAGTAGCGAAGCGGCTGGCCATGAACACGAACCGGGGCGGTCTGGCGGATGTGGCGGGCTGCAGCGGCCACAAGCCTCGCCGGCAGCAACACAAAGACAGCGATTCGACCGGAGGAGAAGCAACCGTCGGCACGCCGGAGCACGAGGAAAAGGGCGCGATGGAGATTTCTGAGCAGGAGCAGGGCACAGCGAACGGTCCACCAGCGACGGGCGCG TCGAGATCGGTGACTATGTGCGAGCGACCTACGACGATGGGGTGGATTACGAGGCGAAAATCATTGGCTTTGGCAG CATGGGGACTGTTga                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BM602528             [                   ccgATTGTAGGAAAAGTTGTGAGATTTTATCCAAAAATTACCATACTATTTTACTAACTAGTTTACCTGATTTTAAAGCTCTGGTGATGAGTACAGGCGGCAGAAAATCGCTTACGCCAAATGCTGCTCCGGAAGGGCAAGCGGAACCAGCCTCCGTGCCACTGGGCGGTGCGATCGGTCGCGAAGACATTTGGGACGACAGTATTATCATCAAAAAGTATGACGCATCGCTGGCACTGATAAAGGCGGAAGTAGCGAAGCGGCTGGCCATGAACACGAACCGGGGCGGTCTGGCGGATGTGGCGGGCTGCAGCGGCCACAAGCCTCGCCGGCAGCAACACAAAGACAGCGATTCGACCGGAGGAGAAGCAACCGTCGGCACGCCGGAGCACGAGGAAAAGGGCGCGATGGAGATTTCTGAGCAGGAGCAGGGCACAGCGAACGGCCAACCAGCGACGGGCGCGTTCGAGATCGGTGACTACGTGCGAGCGACCTACGACGATGGGGTGGATTACGAGGCGAAAATCATTGGCTTTGGCAGCCATGGGGACTGTTTGATCCGGTACGTCGGGTACAACAACGAGCAGACGGTGTTGCTGGAGGAGCTGCTACCGTCCTGGGGGCGAAAAGGCACGGCGTCAGCAGCGCGTTG                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BX623603             [                                                                       ACTAACTAGTTTACCTGATTTTAAAGCTCTTGTAATGAGTACAGGCGGCAGAAAATCGCTTACGCCAAATGCTGCTCCGGAAGGGCAAGCGGAACCAGCCTCCGTGCCACTGGGCGGTGCGATCGGTCGCGAGGACATTTGGGACGACAGTATTATCATCAAAAAGTATGACGCATCGCTGGCACTGATAAAGGCGGAAGTAGCGAAGCGGCTGGCCATGAACACGAACCGGGGCGGTCTGGCGGATGTGGCGGGCTGCAGCGGCCACAAGCCTCGCCGGCAGCAACACAAAGACAGCGATTCGACCGGAGGAGAAGCAACCGTCGGCACGCCGGAGCACGAGGAAAAGGGCGCGATGGAGATTTCTGAGCAGGAGCAGGGCACAGCGAACGGTCCACCAGCGACGGGCGCGTTCGAGATCGGTGACTATGTGCGAGCGACCTACGACGATGGGGTGGATTACGAGGCGAAAATCATTGGCTTTGGCAGCCATGGGGACTGTTTGATCCGGTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BX623702             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                AGGGCACAGCGAACGGTCCACCAGCAACGGGCGCGTTCGAGATCGGCGACTACGTGCGAGCGACCTACGACGATGGGGTGGATTACGAGGCGAAAATCATTGGCTTTGGCAGCCATGGGGACTGTTTGATCCGGTACGTCGGGTACAACAACGAGCAGACGGTGTTGCTGGAGGAGCTGCTACCGTCCTGGGGGCG AAAGGCACGGCGTCAGCAGCGCGTTGAGGCGGCCGAAGCGGAAGCTGCCGCTGCCGACTCGCAGATGGACATTAGCGATGACGAGCGGTTCACGAAGCAGGCCAGCAAGATCAAGATTAACTTCGGACCGAACTTCGGACGATCGAGTATGGGCCAGGCGGCCGGCGGCAGAAGTGGACGATCTGGCATGTTGGGCCCCAGCATGTCCACAGCATACATGGTTCCGCCACCTCCGCCGATGCCCCCGATGCTGGAAGACGCGGATGATGTCGAGTCGGAGAACCTGTCCGCCATGCTGATGTCGTGGTACATGAGCGGTTACTACACCGGGCTCTACCATGGCCAGCGGATGTCTCAGCAGCAGCAGCAACACACGCAGCAGAAGCGGGCACGACNATCGTAATTTTTGCTATGTTCGAGCGGAAACTGTANGGTTGCTGTCGTCNAGTTTTAACGANGAAAT]




>consensus_6195#0
CGCCCCGAGGTTTCAAACGTATATTGTAGGAAAAGTTGTGAGATTTTATCCAAAAATTAC
CATACTATTTTACTAACTAGTTTACCTGATTTTAAAGCTCTTGTAATGAGTACAGGCGGC
AGAAAATCGCTTACGCCAAATGCTGCTCCGGAAGGGCAAGCGGAACCAGCCTCCGTGCCA
CTGGGCGGTGCGATCGGTCGCGAGGACATTTGGGACGACAGTATTATCATCAAAAAGTAT
GACGCATCGCTGGCACTGATAAAGGCGGAAGTAGCGAAGCGGCTGGCCATGAACACGAAC
CGGGGCGGTCTGGCGGATGTGGCGGGCTGCAGCGGCCACAAGCCTCGCCGGCAGCAACAC
AAAGACAGCGATTCGACCGGAGGAGAAGCAACCGTCGGCACGCCGGAGCACGAGGAAAAG
GGCGCGATGGAGATTTCTGAGCAGGAGCAGGGCACAGCGAACGGTCCACCAGCGACGGGC
GCGTTCGAGATCGGTGACTATGTGCGAGCGACCTACGACGATGGGGTGGATTACGAGGCG
AAAATCATTGGCTTTGGCAGCCATGGGGACTGTTTGATCCGGTACGTCGGGTACAACAAC
GAGCAGACGGTGTTGCTGGAGGAGCTGCTACCGTCCTGGGGGCGAAAAGGCACGGCGTCA
GCAGCGCGTTGAGGCGGCCGAAGCGGAAGCTGCCGCTGCCGACTCGCAGATGGACATTAG
CGATGACGAGCGGTTCACGAAGCAGGCCAGCAAGATCAAGATTAACTTCGGACCGAACTT
CGGACGATCGAGTATGGGCCAGGCGGCCGGCGGCAGAAGTGGACGATCTGGCATGTTGGG
CCCCAGCATGTCCACAGCATACATGGTTCCGCCACCTCCGCCGATGCCCCCGATGCTGGA
AGACGCGGATGATGTCGAGTCGGAGAACCTGTCCGCCATGCTGATGTCGTGGTACATGAG
CGGTTACTACACCGGGCTCTACCATGGCCAGCGGATGTCTCAGCAGCAGCAGCAACACAC
GCAGCAGAAGCGGGCACGACNATCGTAATTTTTGCTATGTTCGAGCGGAAACTGTANGGT
TGCTGTCGTCNAGTTTTAACGANGAAAT

consensusID : consensus_6195#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 517
fasta sequence

                              [CAGGCCAGAATCGCCACGAGGTTAGTATTATCATCAAAAAGTATGACGCATCGCTGGCACTGATAAAGGCGGAAGTAGCGAAGCGGCTGGCCATGAACACGAACCGGGGCGGTCTGGCGGATGTGGCGGGCTGCAGCGGCCACAAGCCTCGCCGGCAGCAACACAAAAACAGCGATTCGACCGGAGGGGAAGCAACCGTCGGCACGCCGGAGCACGAGGAAAAGGGCGCGAATGGAGATTTCTGAGCAGGAGCAGGGCACAGCGAACGGTCCACCAGCGACGGGCGCGTTCGAGATCGGTGACTACGTGCGAGCGACCTACGACGATTGGGTGGATTACGAGGCGAAAATCATTGGCTTTGGCAGGCCATGGGGACTGTTTGATCCGGTACGTCGGGGTACAACAACGGAGCAGACGGTGTTGCTGGAGGAACTGCTACCGTCCTGGGGGCGAAAGGCACGGCGTCAGCAGCGCGTTGAGGCGGCNCGAAGCGGAAGCTGCCGCTGCCGACTCGCAG]

[+] EMBL BX468993             [CAGGCCAGAATCGCCACGAGGTTAGTATTATCATCAAAAAGTATGACGCATCGCTGGCACTGATAAAGGCGGAAGTAGCGAAGCGGCTGGCCATGAACACGAACCGGGGCGGTCTGGCGGATGTGGCGGGCTGCAGCGGCCACAAGCCTCGCCGGCAGCAACACAAAAACAGCGATTCGACCGGAGGGGAAGCAACCGTCGGCACGCCGGAGCACGAGGAAAAGGGCGCGAATGGAGATTTCTGAGCAGGAGCAGGGCACAGCGAACGGTCCACCAGCGACGGGCGCGTTCGAGATCGGTGACTACGTGCGAGCGACCTACGACGATTGGGTGGATTACGAGGCGAAAATCATTGGCTTTGGCAGGCCATGGGGACTGTTTGATCCGGTACGTCGGGGTACAACAACGGAGCAGACGGTGTTGCTGGAGGAACTGCTACCGTCCTGGGGGCGAAAGGCACGGCGTCAGCAGCGCGTTGAGGCGGCNCGAAGCGGAAGCTGCCGCTGCCGACTCGCAG]




>consensus_6195#1
CAGGCCAGAATCGCCACGAGGTTAGTATTATCATCAAAAAGTATGACGCATCGCTGGCAC
TGATAAAGGCGGAAGTAGCGAAGCGGCTGGCCATGAACACGAACCGGGGCGGTCTGGCGG
ATGTGGCGGGCTGCAGCGGCCACAAGCCTCGCCGGCAGCAACACAAAAACAGCGATTCGA
CCGGAGGGGAAGCAACCGTCGGCACGCCGGAGCACGAGGAAAAGGGCGCGAATGGAGATT
TCTGAGCAGGAGCAGGGCACAGCGAACGGTCCACCAGCGACGGGCGCGTTCGAGATCGGT
GACTACGTGCGAGCGACCTACGACGATTGGGTGGATTACGAGGCGAAAATCATTGGCTTT
GGCAGGCCATGGGGACTGTTTGATCCGGTACGTCGGGGTACAACAACGGAGCAGACGGTG
TTGCTGGAGGAACTGCTACCGTCCTGGGGGCGAAAGGCACGGCGTCAGCAGCGCGTTGAG
GCGGCNCGAAGCGGAAGCTGCCGCTGCCGACTCGCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6195#0      CGCCCCGAGGTTTCAAACGTATATTGTAGGAAAAGTTGTGAGATTTTATCCAAAAATTAC 60
consensus_6195#1      ------------------------------------------------------------
                                                                                  

consensus_6195#0      CATACTATTTTACTAACTAGTTTACCTGATTTTAAAGCTCTTGTAATGAGTACAGGCGGC 120
consensus_6195#1      ------------------------------------------------------------
                                                                                  

consensus_6195#0      AGAAAATCGCTTACGCCAAATGCTGCTCCGGAAGGGCAAGCGGAACCAGCCTCCGTGCCA 180
consensus_6195#1      ------------------------------------------------------------
                                                                                  

consensus_6195#0      CTGGGCGGTGCGATCGGTCGCGAGGACATTTGGGACGACAGTATTATCATCAAAAAGTAT 240
consensus_6195#1      --------------CAG--GCCAGAATCGCCACGAGGTTAGTATTATCATCAAAAAGTAT 44
                                    * *  ** ** *       ** *  *********************

consensus_6195#0      GACGCATCGCTGGCACTGATAAAGGCGGAAGTAGCGAAGCGGCTGGCCATGAACACGAAC 300
consensus_6195#1      GACGCATCGCTGGCACTGATAAAGGCGGAAGTAGCGAAGCGGCTGGCCATGAACACGAAC 104
                      ************************************************************

consensus_6195#0      CGGGGCGGTCTGGCGGATGTGGCGGGCTGCAGCGGCCACAAGCCTCGCCGGCAGCAACAC 360
consensus_6195#1      CGGGGCGGTCTGGCGGATGTGGCGGGCTGCAGCGGCCACAAGCCTCGCCGGCAGCAACAC 164
                      ************************************************************

consensus_6195#0      AAAGACAGCGATTCGACCGGAGGAGAAGCAACCGTCGGCACGCCGGAGCACGAGGAAAAG 420
consensus_6195#1      AAAAACAGCGATTCGACCGGAGGGGAAGCAACCGTCGGCACGCCGGAGCACGAGGAAAAG 224
                      *** ******************* ************************************

consensus_6195#0      GGCGCGA-TGGAGATTTCTGAGCAGGAGCAGGGCACAGCGAACGGTCCACCAGCGACGGG 479
consensus_6195#1      GGCGCGAATGGAGATTTCTGAGCAGGAGCAGGGCACAGCGAACGGTCCACCAGCGACGGG 284
                      ******* ****************************************************

consensus_6195#0      CGCGTTCGAGATCGGTGACTATGTGCGAGCGACCTACGACGATGGGGTGGATTACGAGGC 539
consensus_6195#1      CGCGTTCGAGATCGGTGACTACGTGCGAGCGACCTACGACGATTGGGTGGATTACGAGGC 344
                      ********************* ********************* ****************

consensus_6195#0      GAAAATCATTGGCTTTGGCAG-CCATGGGGACTGTTTGATCCGGTACGTCGGG-TACAAC 597
consensus_6195#1      GAAAATCATTGGCTTTGGCAGGCCATGGGGACTGTTTGATCCGGTACGTCGGGGTACAAC 404
                      ********************* ******************************* ******

consensus_6195#0      AACG-AGCAGACGGTGTTGCTGGAGGAGCTGCTACCGTCCTGGGGGCGAAAAGGCACGGC 656
consensus_6195#1      AACGGAGCAGACGGTGTTGCTGGAGGAACTGCTACCGTCCTGGGGGCGAAA-GGCACGGC 463
                      **** ********************** *********************** ********

consensus_6195#0      GTCAGCAGCGCGTTGAGGCGGCC-GAAGCGGAAGCTGCCGCTGCCGACTCGCAGATGGAC 715
consensus_6195#1      GTCAGCAGCGCGTTGAGGCGGCNCGAAGCGGAAGCTGCCGCTGCCGACTCGCAG------ 517
                      **********************  ******************************      

consensus_6195#0      ATTAGCGATGACGAGCGGTTCACGAAGCAGGCCAGCAAGATCAAGATTAACTTCGGACCG 775
consensus_6195#1      ------------------------------------------------------------
                                                                                  

consensus_6195#0      AACTTCGGACGATCGAGTATGGGCCAGGCGGCCGGCGGCAGAAGTGGACGATCTGGCATG 835
consensus_6195#1      ------------------------------------------------------------
                                                                                  

consensus_6195#0      TTGGGCCCCAGCATGTCCACAGCATACATGGTTCCGCCACCTCCGCCGATGCCCCCGATG 895
consensus_6195#1      ------------------------------------------------------------
                                                                                  

consensus_6195#0      CTGGAAGACGCGGATGATGTCGAGTCGGAGAACCTGTCCGCCATGCTGATGTCGTGGTAC 955
consensus_6195#1      ------------------------------------------------------------
                                                                                  

consensus_6195#0      ATGAGCGGTTACTACACCGGGCTCTACCATGGCCAGCGGATGTCTCAGCAGCAGCAGCAA 1015
consensus_6195#1      ------------------------------------------------------------
                                                                                  

consensus_6195#0      CACACGCAGCAGAAGCGGGCACGACNATCGTAATTTTTGCTATGTTCGAGCGGAAACTGT 1075
consensus_6195#1      ------------------------------------------------------------
                                                                                  

consensus_6195#0      ANGGTTGCTGTCGTCNAGTTTTAACGANGAAAT 1108
consensus_6195#1      ---------------------------------