|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6200#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1278 fasta sequence
[CCGACTAATCCTCTTCCTTGTTCAATCGCAACCGATGACCTATCGGTAAATAAGCGATCCCACAAGTCAAAACTTAGCGTTCGGTCGTGTTTTATGTGTTCGCTGCACACGGTGCACCGAACACAAAAAACCAACTAGGTTTTAGACCGCTCCTAGAGCCCCCTAGCCCACAAGGTTTCGCACTTGCAGAAGCTCTGAAGGAAACGGATTTTTAAAGCAAATCGTTGTTAATTTTATATTGTACATATTGTGAAGGTTTTCTCTGCGTCTTTCGCTGAAACTACAGCGATGGTAGAAGCAACCTCCTTCCGATCGTTCTACCGTTATCGAAGATCTATACCATTCATCGGTTATCATCCAAATTGTTTCGTGTGTCAAACCTCTATCAGTTTACAAAGTTTGAATTTCGGAAAATTGCTTTTTTGTGTCCATTGCCTCTGGAAGAGTATATAGAAGAGTGGGTGGGTGGGTGTGTGTAAATAAGATTGTTCGAGCAAACAGTTTGGAAGTATCAGCAATTTTTTGAAATAATCAAAGTTCACAAGTATTGAATGCAGTAACAAGACAAGCACACGAGTTCTTATCGGATATATGATATTATTGAAACCATCAAGCCCGATTTAAACGATCTACGATATGTTTCTTCGTTGAAATGACAGAAACTCGACAGCATAGCATTTGCATCTTACATCTTGTTGAGACATTTTCGTCAGAAGCCTGTGCGATGTAAAATACTGCTGATCAAGCAAAAACTGTACATTCAGTTCATGTATGATCTGTCGTATAATGTATGATCGTGTCTCCAACAATCGGGGAGGAACAGCGTGACGTTGATGATAAATGAGGAGGAATGTGCTGTTTATTTATTCTTCCCCCTTGAAGTAACCCC-TCCAACCAGCATATCCGCCTCGTTTAGCTACCTCTAGGCTGATAAGAACTTTGCAAAAAAGCTTACTATTCAAGCATCAATCACTACGGTCGCCAATCGTTAGATTTCGCGGAGAAACGTCCGATCGGCTCGATGTAACTGGTGTGGACAGGTCTGGTGCTCTTATTAGTCTCTTTTTCCTAAAGTACGTGGTGTGGTATCTACAACTATCTTTCTTTATTTCGAAAATTTGTACATAAGACTATACACTACAAACTGGTGATAAAAAAAAGAAAGAAATACGACACGCAAACGGATTCGAAAGCTCGATTAGTTGTACCATGGTAAACTCGATCGATATTCTCCGGTTATGTGACCTGTTGTTTTGNTTTGNTCGATAATTAAATAAA]
[-] EMBL AGA280147 [CCGACTAATCCTCTTCCTTGTTCAATCGCAACCGATGACCTATCGGTAAATAAGCGATCCCACAAGTCAAAACTTAGCGTTCGGTCGTGTTTTATGTGTTCGCTGCACACGGTGCACCGAACACAAAAAA ]
[+] EMBL BX615657 [ TTAGCGTTCGGTCGTGTTTTATGTGTTCTCTGCACACGGTGCACCGGATACCGCGGTCCAACTAGGTTTTAGACCGCTCCTAGAGCCCCCTAGCCCACAAGGTTTCGCACTTGCAGAAGCTCTGAAGGAAACGGATTTTTAAAGCAAATCGTTGTTAATTTTATATTGTACATATTGTGAAGGTTTTCTCTGCGTCTTTCGCTGAAACTACAGCGATGGTAGAAGCAACCTCCTTCCGATCGTTCTACCGTTATCGAAGATCTATACCATTCATCGGTTATCATCCAAATTGTTTCGTGTGTCAAACCTCTATCAGTTTACAAAGTTTGAATTTCGGAAAATTGCTTTTTTGTGTCCATTGCCTCTGGAAGAGTATATAGAAGAGTGGGTGGGTGGGTGTGTGTAAATAAGATTGTTCGAGCAAACAGTTTGGAAGTATCAGCAATTTTTTGAAATAATCAAAGTTCACAAGTATTGAATGCAGTAACAAGACAAGTACACGAGTTCTTATCGGATATATGATATTATTGAAACCATCAAGCCCGATTTAAACGATCTACGATATGTTTCTTCGTTGAAATGACAGAAACTCGACAGCATAGCATTTGCATCTTACATCTTGTTGAGACATTTTCGTCAGAAGCCTGTGCGATGTAAAATACTGCTGATCAAGCAAAAACTGTACATTCAGTTCATGTATGATCTGTCGTATAATGTATGATCGTGTCTCCAACA ]
[+] EMBL BX610885 [ CCGATCGTTCTACCGTTATCGAAGATCTATACCATTCATCGGTTATCATCCAAATTGTTTCGTGTGTCAAACCTCTATCAGTTTACAAAGTTTGAATTTCGGAAAATTGCTTTTTTTTGTCCATTGCCTCTGGAAGAGTATATAGAAGAGTGGGTGGGTGGGTGTGTGTAAATAAGATTGTTCGAGCAAACAGTTTGGAAGTATCAGCAATTTTTTGAAATAATCAAAGTTCACAAGTATTGAATGCAGTAACAAGACAAGCACACGAGTTCTTATCGGATATATGATATTATTGAAACCATCAAGCCCGATTTAAACGATCTACGATATGTTTCTTCGTTGAAATGACAGAAACTCGACAGCATAGCATTTGCATCTTACATCTTGTTGAGACATTTTCGTCAGAAGCCTGTGCGATGTAAAATACTGCTGATCAAGCAAAAACTGTACATTCAGTTCATGTATGATCTGTCGTATAATGTATGATCGTGTCTCCAACAATCGGGGAGGAACAGCGTGACGTTGATGATAAATGAGGAGGAATGTGCTGTTTATTTATTCTTCCCCCTTGAAGTAACCCC TCCAACCAGCATATCCGCCTCGTTTAGCTACCTCTAGGCTGATAAGAACTTTGCAAAAAAGCTTACTATTCAAGCATCAATCACTACGGTCGCCAATCGTTAGATTTCGCGGAGAAACGT ]
[+] EMBL BX626463 [ GCAGTAACAAGACAAGCACACGAGTTCTTATCGGATATATGATATTATTGAAACCATCAAGCCCGATTTAAACGATCTACGATCTGTTTCTTCGTTGAAATGACAGAAACTCGACAGCATAGCATTTGCATCTTACATCTTGTTGAGACATTTTCGTCAGAAGCCTGTGCGATGTAAAATACTGCTGATCAAGCAACAACTGTACATTCAGTTCATGTATGATCTGTCGTATAATGTATGATCGTGTCTCCAACAATCGGGGAGGAACAGCGTGACGTTGATGATAAATGAGGAGGAATGTGCTGTTTATTTATTCTTCCCCCTTGCAGTAACCCCATCCACCCAGCATATCCGCCTCGTTTAGCTACCTCTAGGCTGATAAGAACTTTGCAAAAAAGCTTACTATTCAAGCATCAATCACTACGGTTGCCAATCGTTAGATTTCGCGGAGAAGCGTCCGATCGGCTCGATGTAACTGGTGTGGACAGGTCTGGTGCTCTTATTAGTCTCTTTTTCCTAAAGTACGTGGTGTGGTATCTACAACTATCTTTCTTTATTTCGAAAATTTGTACATAAGACTATACACTACAAACTGGTGATAAAAAAAAGAAAGAAATACGACACGCAAACGGATTCGAAAGCTCGATTAGTTGTACCATGGTAAACTCGATCGATATTCTCCGGTTATGTGACCTGTTGTTTTGNTTTGNTCGATAATTAAATAAA]
consensusID : consensus_6200#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 133 fasta sequence
[CCTCTTCCTTGTTCAATCGCAACCGATGACCTATCGGTAAATAAGCGATCCCACAAGTCAAAACTTAGCGTTCGGTCGTGTTTTATGTGTTCGCTGCACACGGTGCACCGAACACTATAAAAAAAAGAAAAAA]
[+] EMBL AGA281848 [CCTCTTCCTTGTTCAATCGCAACCGATGACCTATCGGTAAATAAGCGATCCCACAAGTCAAAACTTAGCGTTCGGTCGTGTTTTATGTGTTCGCTGCACACGGTGCACCGAACACTATAAAAAAAAGAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6200#0 CCGACTAATCCTCTTCCTTGTTCAATCGCAACCGATGACCTATCGGTAAATAAGCGATCC 60
consensus_6200#1 ---------CCTCTTCCTTGTTCAATCGCAACCGATGACCTATCGGTAAATAAGCGATCC 51
***************************************************
consensus_6200#0 CACAAGTCAAAACTTAGCGTTCGGTCGTGTTTTATGTGTTCGCTGCACACGGTGCACCGA 120
consensus_6200#1 CACAAGTCAAAACTTAGCGTTCGGTCGTGTTTTATGTGTTCGCTGCACACGGTGCACCGA 111
************************************************************
consensus_6200#0 ACACAAAAAACCAACTAGGTTTTAGACCGCTCCTAGAGCCCCCTAGCCCACAAGGTTTCG 180
consensus_6200#1 ACACTATAAAAAAAAGAAAAAA-------------------------------------- 133
**** * *** ** *
consensus_6200#0 CACTTGCAGAAGCTCTGAAGGAAACGGATTTTTAAAGCAAATCGTTGTTAATTTTATATT 240
consensus_6200#1 ------------------------------------------------------------
consensus_6200#0 GTACATATTGTGAAGGTTTTCTCTGCGTCTTTCGCTGAAACTACAGCGATGGTAGAAGCA 300
consensus_6200#1 ------------------------------------------------------------
consensus_6200#0 ACCTCCTTCCGATCGTTCTACCGTTATCGAAGATCTATACCATTCATCGGTTATCATCCA 360
consensus_6200#1 ------------------------------------------------------------
consensus_6200#0 AATTGTTTCGTGTGTCAAACCTCTATCAGTTTACAAAGTTTGAATTTCGGAAAATTGCTT 420
consensus_6200#1 ------------------------------------------------------------
consensus_6200#0 TTTTGTGTCCATTGCCTCTGGAAGAGTATATAGAAGAGTGGGTGGGTGGGTGTGTGTAAA 480
consensus_6200#1 ------------------------------------------------------------
consensus_6200#0 TAAGATTGTTCGAGCAAACAGTTTGGAAGTATCAGCAATTTTTTGAAATAATCAAAGTTC 540
consensus_6200#1 ------------------------------------------------------------
consensus_6200#0 ACAAGTATTGAATGCAGTAACAAGACAAGCACACGAGTTCTTATCGGATATATGATATTA 600
consensus_6200#1 ------------------------------------------------------------
consensus_6200#0 TTGAAACCATCAAGCCCGATTTAAACGATCTACGATATGTTTCTTCGTTGAAATGACAGA 660
consensus_6200#1 ------------------------------------------------------------
consensus_6200#0 AACTCGACAGCATAGCATTTGCATCTTACATCTTGTTGAGACATTTTCGTCAGAAGCCTG 720
consensus_6200#1 ------------------------------------------------------------
consensus_6200#0 TGCGATGTAAAATACTGCTGATCAAGCAAAAACTGTACATTCAGTTCATGTATGATCTGT 780
consensus_6200#1 ------------------------------------------------------------
consensus_6200#0 CGTATAATGTATGATCGTGTCTCCAACAATCGGGGAGGAACAGCGTGACGTTGATGATAA 840
consensus_6200#1 ------------------------------------------------------------
consensus_6200#0 ATGAGGAGGAATGTGCTGTTTATTTATTCTTCCCCCTTGAAGTAACCCCTCCAACCAGCA 900
consensus_6200#1 ------------------------------------------------------------
consensus_6200#0 TATCCGCCTCGTTTAGCTACCTCTAGGCTGATAAGAACTTTGCAAAAAAGCTTACTATTC 960
consensus_6200#1 ------------------------------------------------------------
consensus_6200#0 AAGCATCAATCACTACGGTCGCCAATCGTTAGATTTCGCGGAGAAACGTCCGATCGGCTC 1020
consensus_6200#1 ------------------------------------------------------------
consensus_6200#0 GATGTAACTGGTGTGGACAGGTCTGGTGCTCTTATTAGTCTCTTTTTCCTAAAGTACGTG 1080
consensus_6200#1 ------------------------------------------------------------
consensus_6200#0 GTGTGGTATCTACAACTATCTTTCTTTATTTCGAAAATTTGTACATAAGACTATACACTA 1140
consensus_6200#1 ------------------------------------------------------------
consensus_6200#0 CAAACTGGTGATAAAAAAAAGAAAGAAATACGACACGCAAACGGATTCGAAAGCTCGATT 1200
consensus_6200#1 ------------------------------------------------------------
consensus_6200#0 AGTTGTACCATGGTAAACTCGATCGATATTCTCCGGTTATGTGACCTGTTGTTTTGNTTT 1260
consensus_6200#1 ------------------------------------------------------------
consensus_6200#0 GNTCGATAATTAAATAAA 1278
consensus_6200#1 ------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||