|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6204#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 826 fasta sequence
[GGACGACCTTTCCGTGAAAACACAGAG-CTCCAGCACTGCCAAGTGTTTTCCTACCAGTTTCTGCCCAATTTGCCGGTTCCGTTTCAATCAACGCAAACAAAGCGCCAGCACGCGCCCAGCTATCAATTCCCGACCATACACACATTCAACGCTACCAGCCCATCGTTTCCAAGCAAGTGTGCTGCCGATAC-GTCCTGCTGCCGCCCTCCTAACCTCAACCGGGCGAACAGACAGAATGTCGCACACCATCCTGCTGGTGCAG-CCGGGGCAGCATCCGGAAACGCGCACCTACAGCGACTACGAGAGCGTGAACGAGTGCATGGAGGGGGTGTGCAAGATCTACGAGGAGCAGCTGAAGCGGCGCAACCCCAACACACCGACCATCACCTACGACATTAGCCAGCTATTCGACTTTGTCGATCAGCTAATCGATCTCAGCTGCCTCGTCTACCAGAAGTCGACCAACACCTACGCGCCCTACAACAAGGAATGGATAAAGGAGAAAATCTACGTCCTGCTGAGGCAGGCGGCCGGCACCAACGCGTAATGCAAGCTCCTGTTTCTTCTATTACCCTTTCTCCACACTTTCATTATTTTTTCTTTCTTTCTTTCGGGACGGTCATCTCTCTCTCTCTCTTTCTGGTGTCATCCCACACACACTCTTGAAGTATTGAGCCCATCCGTTGCGACCCTTTCGGTTACGCAGCGGAATCCTTTCTTTTTTTCTTCTTCTTTTTGTTCCATTTCCCTTCTGCACCAGTTTCGTTCATTGGAGCATGTTTTAACATGATTATGCTGTACAGAAATACCCACAATCACTGTGAGA]
[+] EMBL BX606314 [GGACGACCTTTCCGTGAAAACACAGAG CTCCAGCACTGCCAAGTGTTTTCCTACCAGTTTCTGCCCAATTTGCCGGTTCCGTTTCAATCAACGCAAACAAAGCGCCAGCACGCGCCCAGCTATCAATTCCCGACCATACACACATTCAACGCTACCAGCCCATCGTTTCCAAGCAAGTGTGCTGCCGATAC GTCCTGCTGCCGCCCTCCTAACCTCAACCGGGCGAACAGACAGAATGTCGCACACCATCCTGCTGGTGCAG CCGGGGCAGCATCCGGAAACGCGCACCTACAGCGACTACGAGAGCGTGAACGAGTGCATGGAGGGGGTGTGCAAGATCTACGAGGAGCAGCTGAAGCGGCGCAACCCCAACACACCGACCATCACCTACGACATTAGCCAGCTATTCGACTTTGTCGATCAGCTAATCGATCTCAGCTGCCTCGTCTACCAGAAGTCGACCAACACCTACGCGCCCTACAACAAGGAATGGATAAAGGAGAAAATCTACGTCCTGCTGAGGCAGGCGGCCGGCACCAACGCGTAATGCAAGCTCCTGTTTCTTCTATTACCCTTTCTCCACACTTTCATTATTTTTTCTTTCTTTCTTTCGGGACGGTCATCTCTCTCTCTCTCTTTCTGGTGTCATCCCACACACACTCTTGAAGTATTGAGCCCATCCGTTGCGACCCTTTCGGTTACGCAGCGGAATCCTTTCTTTTTTTCTTCTTCTTTTTGTTCCATTTCCCTTCTGCACCAGTTTCGTTCATTGGAGCATGTTTTAACATGATTATGCTGTACAGAAATACCCACAATCACTGTGAGA]
[+] EMBL BX619234 [ GACCGTGCCGTGAAAACACAGAGACTCCAGCACTGCCAAGTGTTTTCCTACCAGTATCTGCCCAATTTGCCGGTTCCGTTTCAATCAACGCAAACAAAGCGCCAGCACGCGCCCGGCTATCAATTCCCGACCATACACACATTCAACGCTACCAGCCCATCGTTTCCAAGCAAGTGTGCTGCCGATACNGTCCTGCTGCCGCCCTCCTAACCTCAACAGGGCGAACAGACAGAATGTCGCACACCATCCTGCTGGTGCAGACCGGGGCAGCATCCGGAAACGCGCACCTACAGCGACTACGAGAGCGTGAACGAGTGCATGGAGGGGGTGTGCAAGATCTACGAGGAGCAGCTGAAGCGGCGCAACCCCAACACACCGACCATCACCTACGACATTAGCCAGCTTTNNGACTTTGTCGATCAGCTAATCGATCTCAGCTGCCTCGTCTACCAGAAGTCNACCAACACCTACGCGC ]
consensusID : consensus_6204#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 689 fasta sequence
[CCGGCCGTGTGCCATCGGACGGACGGTATACCTTTTGGGCCGACGAGCGGAACCAATTTCCAGTCGCGCGGGTAAATTAAAGAACAAAATCCACCCGCCTGCTCGATCAACGCCATCAACGCTTTTCCACCATCAACACACCACGCCGGTGGGCTGGACGCCGCATTTCCACATCGGCAAACGGCGGACCAAAGTTGGCAATTTTTCCTTAACAACCGCAACCCGGCGGACGGACAGAATGTCGCACACCATCCTGCTGGTGCAGCCGGGGCAGCATCCGGAAACGCGCACCTACAGCGACTACGAGAGCGTGAACGAGTGCATGGAGGGGGTGTGCAAGATCTACGAGGAGCAGCTGAAGCGGCGCAACCCCAACACACCGACCATCACCTACGACATTAGCCAGCTATTCGACTTTGTCGATCAGCTAATCGATCTCAGCTGCCTCGTCTACCAGAAGTCGACCAACACCTACGCGCCCTACAACAAGGAATGGATAAAGGAGAAAATCTACGTCCTGCTGAGGCAGGCGGCCGGCACCAACGCGTAACCCAACCGGGTGTCGGAAGAGGGCAGCAGCACGTGCTGCGACACGAGCCCGACTTTTTTTTTCATATTTTATTTTATTTTTTAAATTTCCTTTCCCATTATTTGTACACACTTTTACAGGCTGAAAATTGTGGTTTGGA]
[+] EMBL BM596817 [CCGGCCGTGTGCCATCGGACGGACGGTATACCTTTTGGGCCGACGAGCGGAACCAATTTCCAGTCGCGCGGGTAAATTAAAGAACAAAATCCACCCGCCTGCTCGATCAACGCCATCAACGCTTTTCCACCATCAACACACCACGCCGGTGGGCTGGACGCCGCATTTCCACATCGGCAAACGGCGGACCAAAGTTGGCAATTTTTCCTTAACAACCGCAACCCGGCGGACGGACAGAATGTCGCACACCATCCTGCTGGTGCAGCCGGGGCAGCATCCGGAAACGCGCACCTACAGCGACTACGAGAGCGTGAACGAGTGCATGGAGGGGGTGTGCAAGATCTACGAGGAGCAGCTGAAGCGGCGCAACCCCAACACACCGACCATCACCTACGACATTAGCCAGCTATTCGACTTTGTCGATCAGCTAATCGATCTCAGCTGCCTCGTCTACCAGAAGTCGACCAACACCTACGCGCCCTACAACAAGGAATGGATAAAGGAGAAAATCTACGTCCTGCTGAGGCAGGCGGCCGGCACCAACGCGTAACCCAACCGGGTGTCGGAAGAGGGCAGCAGCACGTGCTGCGACACGAGCCCGACTTTTTTTTTCATATTTTATTTTATTTTTTAAATTTCCTTTCCCATTATTTGTACACACTTTTACAGGCTGAAAATTGTGGTTTGGA]
consensusID : consensus_6204#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 606 fasta sequence
[CAAGAATTGCCCCGAGGTTNGACTACGAGAGCGTGAACGAGTGCATGGAGGGGGTGTGCAAGATCTACGAGNGAGCAGCTGAAGCGGCTGCAACCCAACACACCGACCATCACCTACGAGGAGCAGCTGAAGCGGCGCAAACCCAAAACACCGACATCACCTACGACATTAGCCAGCTATTCGACTTTGTCGATCAGCTAATCGATCTCAGCTGCCTCGTCTAACAGAAGTCGACCAAACCTACGCGCCCTACAACAAGGAATGGATAAAGGAGAAAATCTACGTCCTGCTGAGGCAGTGCGGCCGGCACCAACGCGTAACCCAACCGGTGTCGGAAGAGGGCAGCAGCACGTGCTGCGACACGAGCCGACTTATAATTTTCATATTTTATTTTATATTTTTAAATTTCCTTTCCCATTATTTGTACACACTTTTACAGGCTGCAGCACTTGGTGTGGACAGCCCGAACAGCAAAACCAACACAAAAAACGATCCCAACCCAAGGACTGTGTANCGACACGAGGTCANGCATATTAGCCAAAATCGGTTTTGGCCATCTTTGACACGCCGGCAGAGCCGCTTGAAAAATGCNTCATACTTCACACA]
[+] EMBL AL930056 [CAAGAATTGCCCCGAGGTTNGACTACGAGAGCGTGAACGAGTGCATGGAGGGGGTGTGCAAGATCTACGAGNGAGCAGCTGAAGCGGCTGCAACCCAACACACCGACCATCACCTACGAGGAGCAGCTGAAGCGGCGCAAACCCAAAACACCGACATCACCTACGACATTAGCCAGCTATTCGACTTTGTCGATCAGCTAATCGATCTCAGCTGCCTCGTCTAACAGAAGTCGACCAAACCTACGCGCCCTACAACAAGGAATGGATAAAGGAGAAAATCTACGTCCTGCTGAGGCAGTGCGGCCGGCACCAACGCGTAACCCAACCGGTGTCGGAAGAGGGCAGCAGCACGTGCTGCGACACGAGCCGACTTATAATTTTCATATTTTATTTTATATTTTTAAATTTCCTTTCCCATTATTTGTACACACTTTTACAGGCTGCAGCACTTGGTGTGGACAGCCCGAACAGCAAAACCAACACAAAAAACGATCCCAACCCAAGGACTGTGTANCGACACGAGGTCANGCATATTAGCCAAAATCGGTTTTGGCCATCTTTGACACGCCGGCAGAGCCGCTTGAAAAATGCNTCATACTTCACACA]
consensusID : consensus_6204#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 583 fasta sequence
[CCGCCCACGCGTCCGGGTAAATTAAAGAACAAAATCCACCCGCCTGCTCGATCAACGCCATCAACGCTTTTCCACCATCAACACACCACGCCGGTGGGCTGGACGCCGCATTTCCACATCGGCAAACGGCGGACCAAAGTAATGCGCTGTTGTTTACTTTTTTAGTTGGCAATTTTTCCTTAACAACCGCAACCCGGCGGACGGACAGAATGTCGCACACCATCCTGCTGGTGCAGCCGGGGCAGCATCCGGAAACGCGCACCTACAGCGACTACGAGAGCGTGAACGAGTGCATGGAGGGGGTGTGCAAGATCTACGAGGAGCAGCTGAAGCGGCGCAACCCCAACACACCGACCATCACCTACGACATTAGCCAGCTATTCGACTTTGTCGATCAGCTAATCGATCTCAGCTGCCTCGTCTACCAGAAGTCGACCAACACCTACGCGCCCTACAACAAGGAATGGATAAAGGAGAAAATCTACGTCCTGCTGAGGCAGGCGGCCGGCACCAACGCGTAACCCAACCGGTGTCGGAAGAGGGCAGCAGCACGTGCTGCGACACGAGCCGACTTTTTTTTTCA]
[+] EMBL BM600461 [CCGCCCACGCGTCCGGGTAAATTAAAGAACAAAATCCACCCGCCTGCTCGATCAACGCCATCAACGCTTTTCCACCATCAACACACCACGCCGGTGGGCTGGACGCCGCATTTCCACATCGGCAAACGGCGGACCAAAGTAATGCGCTGTTGTTTACTTTTTTAGTTGGCAATTTTTCCTTAACAACCGCAACCCGGCGGACGGACAGAATGTCGCACACCATCCTGCTGGTGCAGCCGGGGCAGCATCCGGAAACGCGCACCTACAGCGACTACGAGAGCGTGAACGAGTGCATGGAGGGGGTGTGCAAGATCTACGAGGAGCAGCTGAAGCGGCGCAACCCCAACACACCGACCATCACCTACGACATTAGCCAGCTATTCGACTTTGTCGATCAGCTAATCGATCTCAGCTGCCTCGTCTACCAGAAGTCGACCAACACCTACGCGCCCTACAACAAGGAATGGATAAAGGAGAAAATCTACGTCCTGCTGAGGCAGGCGGCCGGCACCAACGCGTAACCCAACCGGTGTCGGAAGAGGGCAGCAGCACGTGCTGCGACACGAGCCGACTTTTTTTTTCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6204#1 CCGGCCGTGTGCCATCGGACGGACGGTATACCTTTTGGGCCGACGAGCGGAACCAATTTC 60
consensus_6204#3 -------------------------------------------------------CCGCC 5
consensus_6204#2 ------------------------------------------------------------
consensus_6204#0 -------------------------GGACGACCTTTCCGTGAAAACACAGAGCTCCAGCA 35
consensus_6204#1 CAGTCGCGCGGGTAAATTAAAGAACAAAATCCACCCGCCTGCTCGATCAACGCCATCAAC 120
consensus_6204#3 CACGCGTCCGGGTAAATTAAAGAACAAAATCCACCCGCCTGCTCGATCAACGCCATCAAC 65
consensus_6204#2 ------------------------------------------------------------
consensus_6204#0 CTGCCAAGTGTTTTCCTACCAGTTTCTGCCCAATTTGCCGGTTCCGTT---TCAATCAAC 92
consensus_6204#1 GCTTTTCCACCATCAACACACCACGCCGGTGGGCTGGACGCCGCATTTCCACATCGGCAA 180
consensus_6204#3 GCTTTTCCACCATCAACACACCACGCCGGTGGGCTGGACGCCGCATTTCCACATCGGCAA 125
consensus_6204#2 ------------------------------------------------------------
consensus_6204#0 GCAAACAAAGCGCCAGCACGC-GCCCAGCTATCAATTCCCGACCATACACACATTCAACG 151
consensus_6204#1 ACGGCGGACCAAAGT--------------------------TGGCAATTTTTCCTTAACA 214
consensus_6204#3 ACGGCGGACCAAAGTAATGCGCTGTTGTTTACTTTTTTAGTTGGCAATTTTTCCTTAACA 185
consensus_6204#2 -------------------------------------------------------CAAGA 5
consensus_6204#0 CTACCAGCCCATCGTTTCCAAGCAAGTGTGCTGCCGATACGTCCTGCTGCCGCCCTCCTA 211
*
consensus_6204#1 ACCGCAACCCGGCGGACGGACAGAATGTCGCACACCATCCTGCTGGTGCAGCCGGGGCAG 274
consensus_6204#3 ACCGCAACCCGGCGGACGGACAGAATGTCGCACACCATCCTGCTGGTGCAGCCGGGGCAG 245
consensus_6204#2 ATTGC--CCCGAGGTTNGACTACGAGAGCGTGAACGAGTGCATGGAGGGGGT--GTGCAA 61
consensus_6204#0 ACCTCAACCGGGCGAACAGACAGAATGTCGCACACCATCCTGCTGGTGCAGCCGGGGCAG 271
* * ** * * * * ** ** * * * * * ***
consensus_6204#1 CATCCGGAAACGCGCACCTACAGCGACTACGAGAGCGTGAACGAGTGCATGGAGGGGGTG 334
consensus_6204#3 CATCCGGAAACGCGCACCTACAGCGACTACGAGAGCGTGAACGAGTGCATGGAGGGGGTG 305
consensus_6204#2 GATCTACGAGNGAGCAGCTGAAGCGGCTGCAAC--------CCAACACACCGAC------ 107
consensus_6204#0 CATCCGGAAACGCGCACCTACAGCGACTACGAGAGCGTGAACGAGTGCATGGAGGGGGTG 331
*** * * *** ** **** ** * * * * ** **
consensus_6204#1 TGCAAGATCTACGAGGAGCAGCTGAAGCGGCGCAACCCCAACACACCGACCATCACCTAC 394
consensus_6204#3 TGCAAGATCTACGAGGAGCAGCTGAAGCGGCGCAACCCCAACACACCGACCATCACCTAC 365
consensus_6204#2 --CATCACCTACGAGGAGCAGCTGAAGCGGCGCAAACCCAAAACACCGAC-ATCACCTAC 164
consensus_6204#0 TGCAAGATCTACGAGGAGCAGCTGAAGCGGCGCAACCCCAACACACCGACCATCACCTAC 391
** * *************************** ***** ******** *********
consensus_6204#1 GACATTAGCCAGCTATTCGACTTTGTCGATCAGCTAATCGATCTCAGCTGCCTCGTCTAC 454
consensus_6204#3 GACATTAGCCAGCTATTCGACTTTGTCGATCAGCTAATCGATCTCAGCTGCCTCGTCTAC 425
consensus_6204#2 GACATTAGCCAGCTATTCGACTTTGTCGATCAGCTAATCGATCTCAGCTGCCTCGTCTAA 224
consensus_6204#0 GACATTAGCCAGCTATTCGACTTTGTCGATCAGCTAATCGATCTCAGCTGCCTCGTCTAC 451
***********************************************************
consensus_6204#1 CAGAAGTCGACCAACACCTACGCGCCCTACAACAAGGAATGGATAAAGGAGAAAATCTAC 514
consensus_6204#3 CAGAAGTCGACCAACACCTACGCGCCCTACAACAAGGAATGGATAAAGGAGAAAATCTAC 485
consensus_6204#2 CAGAAGTCGACCAA-ACCTACGCGCCCTACAACAAGGAATGGATAAAGGAGAAAATCTAC 283
consensus_6204#0 CAGAAGTCGACCAACACCTACGCGCCCTACAACAAGGAATGGATAAAGGAGAAAATCTAC 511
************** *********************************************
consensus_6204#1 GTCCTGCTGAGGCAG-GCGGCCGGCACCAACGCGTAACCCAACCGGGTGTCGGAAGAGGG 573
consensus_6204#3 GTCCTGCTGAGGCAG-GCGGCCGGCACCAACGCGTAACCCAACCGG-TGTCGGAAGAGGG 543
consensus_6204#2 GTCCTGCTGAGGCAGTGCGGCCGGCACCAACGCGTAACCCAACCGG-TGTCGGAAGAGGG 342
consensus_6204#0 GTCCTGCTGAGGCAG-GCGGCCGGCACCAACGCGTAATGCAAGCTCCTGTTTCTT----- 565
*************** ********************* *** * ***
consensus_6204#1 CAGCAGCACGTGCTGCGACACGAGCCCGACTTTTTTTTTCATATTTTATTTTAT-TTTTT 632
consensus_6204#3 CAGCAGCACGTGCTGCGACACGAGCC-GACTTTTTTTTTCA------------------- 583
consensus_6204#2 CAGCAGCACGTGCTGCGACACGAGCCGACTTATAATTTTCATATTTTATTTTATATTTTT 402
consensus_6204#0 CTATTACCCTTTCT-CCACACTTTC---ATTATTTTTTCTTTCTTTCTTTCGGGACGGTC 621
* * * * ** * **** * * * ***
consensus_6204#1 AAATTTCCTTTCCCATTATTTGTACACACTTTTACAGGCTGAAAATTGTGGTTTGGA--- 689
consensus_6204#3 ------------------------------------------------------------
consensus_6204#2 AAATTTCCTTTCCCATTATTTGTACACACTTTTACAGGCTGCAGCACTTGGTGTGGACAG 462
consensus_6204#0 ATCTCTCTCTCTCTCTTTCTGGTGTCATCCCACACACACTCTTGAA-GTATTGAGCCCAT 680
consensus_6204#1 ------------------------------------------------------------
consensus_6204#3 ------------------------------------------------------------
consensus_6204#2 CCCGAACAGCAAAACCAAC-ACAAAAAACGATCCCAACCCAAGGACTGTGTANCGACACG 521
consensus_6204#0 CCGTTGCGACCCTTTCGGTTACGCAGCGGAATCCTTTCTTTTTTTCTTCTTCTTTTTGTT 740
consensus_6204#1 ------------------------------------------------------------
consensus_6204#3 ------------------------------------------------------------
consensus_6204#2 AGGTCANGCATATTAGCCAAAATCGGTTTTGGCCATCTTTGACACGCCGGCAGAGCCGCT 581
consensus_6204#0 CCATTTCCCTTCTGCACCAGTTTCGTTCATTGGAGCATGTTTTAACATGATTATGCTGTA 800
consensus_6204#1 --------------------------
consensus_6204#3 --------------------------
consensus_6204#2 TGAAAAATGCNTCATACTTCACACA- 606
consensus_6204#0 CAGAAATACCCACAATCACTGTGAGA 826
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||