cluster # 6207

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Anopheles gambiae
cluster # 6207 cluster # 6207 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6207#0 length = 690 sequences # 4

consensus_6207#1 length = 520 sequences # 1

consensusID : consensus_6207#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 690
fasta sequence

                              [CATATCNNACATCTCCAGTCGGTTTGATTTTCNAATCGCAAACCACCAACTCAAAACGTTCATTAAATGGGATAAAGTAGAATTCCACCAAATAAAACCCTTTCTGCAACAATTATCCCCGCACACACTGGGAAGCGTAACGACCACCTGCAGCACAATCACGCTTATCAGTGTGATGGAAATCTTTCCGTGTGGTTTGTTTCGTACGGCACAGCAAACCAACCACCATCATACGATGATCAGCAACTGGACGGCTCATCAGTAGCGTTCACCCAGAGGACCCGTACGTACCAAATGTTGTTTCCCGCTTCATCCCGAACACTGCTCCACCGTTGGATAAATCAGTGCGGAGTGTTTGAATCCCGGAGTTTGAAAACCACCGGACTGCAGATCCGGCAATTAGGTGCAAGTGCTTCATTGTTCGCTGGAGTGCAATTTACCGCTCCTTACAGTAGTAGCGGGCTGAGCCGGCGTTTGAAGGAGCAGCAGACGATCAGTAGTGGATACAGTAGCAAGAAGTATTCAAATATGTTACCGTCGCACGAAACGATGGCGCAGCGAGGTGGACCCGTCGAGCCGGTGCGCTTCACG-AAAAACATGACATTCTTCACCAATCGAAAGCAAAGCTATGAAAAAGACAATCATACATTAAGGCTGACGGAAACGCTCGACAAGCCGTTGGTGTTTATC]

[+] EMBL BX620620             [CATATCNNACATCTCCAGTCGGTTTGATTTTCNAATCGCAAACCACCAACTCAAAACGTTCATTAAATGGGATAAAGTAGAATTCCACCAAATAAAACCCTTTCTGCAACAATTATCCCCGCACACACTGGGAAGCGTAACGACCACCTGCAGCACAATCACGCTTATCAGNGTGATGGAAATCTTTCCGTGTGGTTTGTTTCGTACGGCACAGCAAACCAACCACCTTCAAACGATGATCAGCAGCTGGACGGCTCATCAGTAGCGTTCACCCAGAGGACCCGTACGTACCAAATGTTGTTTCCCGCTTCATCCCAAACACTGCTCCACCGTTGGATAAATCAGTGCGGAGTGTTTGAATCCCGGAGTTCGAAAACCACCGGACTGCAGATCCGGCAATTAGGTGCAAGTGCTTCATTGTTCGCTGGAGTGCATTTTACCGCTCCTTACAGTAGTAGCGGACTGAGCCGGCGATTGAAGGAGCAGCAGACGATCAGTAGTGGATACAGTAGCAAGAAGTATTCAAATATGTTACCGTCGCACGAAACGATGGCGCAGCGAGGAGGACCCGCCGAGCCGGTGCGCTTCACGAAAAAACATGACATTCTTCNCCAATCGAAAGCAAAGCTATGAAAAAGACANCCATACATTAAGGCTGACGGAAACGCTCGACAAGCCGTTGGTGTTTATC]
[+] EMBL BM583579             [  ccgcaaACATCTACAGCCGGTTTGATTTTCAAATCGCAAACCACCAATTCAAAACGTTCATTAAATGGGTTAAAGTGGAATTCCACCAAATAAAACCCTTTCTGCAACAATTATCCCCGCACACACTGGGAAGCGTAACGACCACCTGCAGCACAATCACGCTTATCAGTGTGATGGAAATCTTTCCGTGTGGTTTGTTTCGTACGGCACAGCAAACCAACCACCATCATACGATGATCAGCAACTGGACGGCTCATCAGTAGCGTTCTCCCAGAGGACCCGTACGTACCAAATGTTGTTTCCCGCTTCATCCCGAACACTGCTCCACCGTTGGATAAATCAGTGCGGAGTGTTTGAATCCCGGAGTTTGAAAACCACCGGACTGCAGATCCGGCAATTAGGTGCAAGTGCTTCATTGTTCGCTGGAGTGCAATTTACCGCTCCTTACAGTAGTAGCGGGCTGAGCCGGCGTTTGAAGGAGCAGCAGACGATCAGTAGTGGATACAGTAGCAAGACGTATTCAAATATGTTACCGTCGCACGAAACGATGGCGCAGCGAGGTGGACCCGTCGAGCCGGTGCGCTTCACG AAAAACATGACATTCTTCACCAATAGAAAGCAAAGCTATGAAAAAGACAATCATACATTAAGGCTGACGGAAACGCTCGACAAGCCGTTGG        ]
[+] EMBL CNS08G5O             [                                                                                                    TTTCTGCAACAATTATTCCCGCACACACTGGGAAGCGTAACGACCACCTGCAGCACAATCACGCTTATCAGTGTGATGGAAATCTTTCCGTGTGGTTTGTTTCGTACGGCACAGCAAACCAACCACCATCATACGATGATCAGCAACTGGACGGCTCATCAGTAGCGTTCACCCAGAGGACCCGTACGTACCAAATGTTGTTTCCCGCTTCATCCCGAACACTGCTCCACCGTTGGATAAATCAGTGCGGAGTATTTGAATCCCGGAGTTTGAAAACCACCGGACTGCAGATACGGCAATTAGGTGCAAGTGCTTCATTGTTCGCTGGAGTGCAATTTACCGCTCCTTACAGTAGTAGCGGGCTGAGCCGGCGTTTGAAGGAGCAGCAGACGATCAGTAGTGGATACAGTAGCAAGAAGTATTCAAATATGTTACCGTCGCACGAAACGATGGCGCA CGAGGTGGACCCGTCGAGCCGGTGCGCTTCACG AAAAACATGACATTCTTCACCAATCGAAAGCAAAGCTATGAAAAAGACAATCATACATTAAGGCTGACGGAAACGCTCGACAAGCCGTTG         ]
[+] EMBL CNS08SAJ             [                                                                                                    TTTCTGCAACAATTATTCCCGCACACACTGGGAAGCGTAACGACCACCTGCAGCACAATCACGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]




>consensus_6207#0
CATATCNNACATCTCCAGTCGGTTTGATTTTCNAATCGCAAACCACCAACTCAAAACGTT
CATTAAATGGGATAAAGTAGAATTCCACCAAATAAAACCCTTTCTGCAACAATTATCCCC
GCACACACTGGGAAGCGTAACGACCACCTGCAGCACAATCACGCTTATCAGTGTGATGGA
AATCTTTCCGTGTGGTTTGTTTCGTACGGCACAGCAAACCAACCACCATCATACGATGAT
CAGCAACTGGACGGCTCATCAGTAGCGTTCACCCAGAGGACCCGTACGTACCAAATGTTG
TTTCCCGCTTCATCCCGAACACTGCTCCACCGTTGGATAAATCAGTGCGGAGTGTTTGAA
TCCCGGAGTTTGAAAACCACCGGACTGCAGATCCGGCAATTAGGTGCAAGTGCTTCATTG
TTCGCTGGAGTGCAATTTACCGCTCCTTACAGTAGTAGCGGGCTGAGCCGGCGTTTGAAG
GAGCAGCAGACGATCAGTAGTGGATACAGTAGCAAGAAGTATTCAAATATGTTACCGTCG
CACGAAACGATGGCGCAGCGAGGTGGACCCGTCGAGCCGGTGCGCTTCACGAAAAACATG
ACATTCTTCACCAATCGAAAGCAAAGCTATGAAAAAGACAATCATACATTAAGGCTGACG
GAAACGCTCGACAAGCCGTTGGTGTTTATC

consensusID : consensus_6207#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 520
fasta sequence

                              [ATCCCCCGAGGTTAGTTTCCCGCTTCATCCCGAACACTGCTCACCGTTGGATAAATCAGTGCGGAGTGTTTGAATCCCGGCAGTTTGAAAACCACCGGACTGCAGATCCGGCAATTAGGTGCAAGTGCTTCATTGTTCGCTGGAGTGCAATTTACCGCTCCTTACAGTAGTAGCGGGCTGAGCCGGCGTTTGAACGGAGCAGCAGACGATCAGTAGTGGATACAGTAGCAAGACGTATTCAAATATGTTACCGTCGCACGAAACGATGGCGCAGCGAGGTGGACCCGTCGAGCCGGTGCGCTTCACGAAAAACATGACATTCTTCACCAATAGAAAGCAAAGCTATGAAAAAGACAATCATACATTAAGGCTGACGGAAACGCTCGACAAGCCGTTGGTGTTTATCTTCGCCTGGCTACAGGCGTCCGAAAAGCATCTGGCAAAGTACGCCGACTTCTACCTGGACCAGGGGTTCGAAGTGCTGTGCGTCCACATAACGCCCTGGCAGCTGGTGTGGCCC]

[+] EMBL AL933136             [ATCCCCCGAGGTTAGTTTCCCGCTTCATCCCGAACACTGCTCACCGTTGGATAAATCAGTGCGGAGTGTTTGAATCCCGGCAGTTTGAAAACCACCGGACTGCAGATCCGGCAATTAGGTGCAAGTGCTTCATTGTTCGCTGGAGTGCAATTTACCGCTCCTTACAGTAGTAGCGGGCTGAGCCGGCGTTTGAACGGAGCAGCAGACGATCAGTAGTGGATACAGTAGCAAGACGTATTCAAATATGTTACCGTCGCACGAAACGATGGCGCAGCGAGGTGGACCCGTCGAGCCGGTGCGCTTCACGAAAAACATGACATTCTTCACCAATAGAAAGCAAAGCTATGAAAAAGACAATCATACATTAAGGCTGACGGAAACGCTCGACAAGCCGTTGGTGTTTATCTTCGCCTGGCTACAGGCGTCCGAAAAGCATCTGGCAAAGTACGCCGACTTCTACCTGGACCAGGGGTTCGAAGTGCTGTGCGTCCACATAACGCCCTGGCAGCTGGTGTGGCCC]




>consensus_6207#1
ATCCCCCGAGGTTAGTTTCCCGCTTCATCCCGAACACTGCTCACCGTTGGATAAATCAGT
GCGGAGTGTTTGAATCCCGGCAGTTTGAAAACCACCGGACTGCAGATCCGGCAATTAGGT
GCAAGTGCTTCATTGTTCGCTGGAGTGCAATTTACCGCTCCTTACAGTAGTAGCGGGCTG
AGCCGGCGTTTGAACGGAGCAGCAGACGATCAGTAGTGGATACAGTAGCAAGACGTATTC
AAATATGTTACCGTCGCACGAAACGATGGCGCAGCGAGGTGGACCCGTCGAGCCGGTGCG
CTTCACGAAAAACATGACATTCTTCACCAATAGAAAGCAAAGCTATGAAAAAGACAATCA
TACATTAAGGCTGACGGAAACGCTCGACAAGCCGTTGGTGTTTATCTTCGCCTGGCTACA
GGCGTCCGAAAAGCATCTGGCAAAGTACGCCGACTTCTACCTGGACCAGGGGTTCGAAGT
GCTGTGCGTCCACATAACGCCCTGGCAGCTGGTGTGGCCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6207#0      CATATCNNACATCTCCAGTCGGTTTGATTTTCNAATCGCAAACCACCAACTCAAAACGTT 60
consensus_6207#1      ------------------------------------------------------------
                                                                                  

consensus_6207#0      CATTAAATGGGATAAAGTAGAATTCCACCAAATAAAACCCTTTCTGCAACAATTATCCCC 120
consensus_6207#1      ------------------------------------------------------------
                                                                                  

consensus_6207#0      GCACACACTGGGAAGCGTAACGACCACCTGCAGCACAATCACGCTTATCAGTGTGATGGA 180
consensus_6207#1      ------------------------------------------------------------
                                                                                  

consensus_6207#0      AATCTTTCCGTGTGGTTTGTTTCGTACGGCACAGCAAACCAACCACCATCATACGATGAT 240
consensus_6207#1      ------------------------------------------------------------
                                                                                  

consensus_6207#0      CAGCAACTGGACGGCTCATCAGTAGCGTTCACCCAGAGGACCCGTACGTACCAAATGTTG 300
consensus_6207#1      ---------------------------------------------ATCCCCCGAGGTTAG 15
                                                                   *    ** *   * *

consensus_6207#0      TTTCCCGCTTCATCCCGAACACTGCTCCACCGTTGGATAAATCAGTGCGGAGTGTTTGAA 360
consensus_6207#1      TTTCCCGCTTCATCCCGAACACTGCTC-ACCGTTGGATAAATCAGTGCGGAGTGTTTGAA 74
                      *************************** ********************************

consensus_6207#0      TCCCGG-AGTTTGAAAACCACCGGACTGCAGATCCGGCAATTAGGTGCAAGTGCTTCATT 419
consensus_6207#1      TCCCGGCAGTTTGAAAACCACCGGACTGCAGATCCGGCAATTAGGTGCAAGTGCTTCATT 134
                      ****** *****************************************************

consensus_6207#0      GTTCGCTGGAGTGCAATTTACCGCTCCTTACAGTAGTAGCGGGCTGAGCCGGCGTTTGAA 479
consensus_6207#1      GTTCGCTGGAGTGCAATTTACCGCTCCTTACAGTAGTAGCGGGCTGAGCCGGCGTTTGAA 194
                      ************************************************************

consensus_6207#0      -GGAGCAGCAGACGATCAGTAGTGGATACAGTAGCAAGAAGTATTCAAATATGTTACCGT 538
consensus_6207#1      CGGAGCAGCAGACGATCAGTAGTGGATACAGTAGCAAGACGTATTCAAATATGTTACCGT 254
                       ************************************** ********************

consensus_6207#0      CGCACGAAACGATGGCGCAGCGAGGTGGACCCGTCGAGCCGGTGCGCTTCACGAAAAACA 598
consensus_6207#1      CGCACGAAACGATGGCGCAGCGAGGTGGACCCGTCGAGCCGGTGCGCTTCACGAAAAACA 314
                      ************************************************************

consensus_6207#0      TGACATTCTTCACCAATCGAAAGCAAAGCTATGAAAAAGACAATCATACATTAAGGCTGA 658
consensus_6207#1      TGACATTCTTCACCAATAGAAAGCAAAGCTATGAAAAAGACAATCATACATTAAGGCTGA 374
                      ***************** ******************************************

consensus_6207#0      CGGAAACGCTCGACAAGCCGTTGGTGTTTATC---------------------------- 690
consensus_6207#1      CGGAAACGCTCGACAAGCCGTTGGTGTTTATCTTCGCCTGGCTACAGGCGTCCGAAAAGC 434
                      ********************************                            

consensus_6207#0      ------------------------------------------------------------
consensus_6207#1      ATCTGGCAAAGTACGCCGACTTCTACCTGGACCAGGGGTTCGAAGTGCTGTGCGTCCACA 494
                                                                                  

consensus_6207#0      --------------------------
consensus_6207#1      TAACGCCCTGGCAGCTGGTGTGGCCC 520