These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6214#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1912 fasta sequence [CCGCGCGCAGTCGCGCTCCCTAGGAGCAAAACATAGCACAAACATAGAACTAATACAACAAGCATAATTGCATAAAACGCGAAACTTGCGGCTATGTAAGTACCGCGAAGGAAGGAGCAAAAACCCGCACGCAAAAGGTGTATCCGAACGAAGAAAAGAGAGAAATAGAAAATCCAAACACGCCAATACGAGAGCAGAAGAAACACTTGGAAACTGGATGAATGAAATTGTACCGCACAAGTGAGGCAAACCTATATCCGCTTTTGACTACCCAAAATAAGTATCTTTTTTGAGTAAACAAAAGAAAAAGAATAAGAAGAAGAAGTAAAACCAATGAGTAAAGAAAAAGGGGTGGTAGTAGGCGCAAAACACACACACATACAAAAACAAACAAACAAACACAAATAATCTAAACAAATACTATAATATTTGACGATAAAAAGAAAGAAACATTTAGAATGAGAAAACCAATGTGACATAAAACAAGTGTGGCAGTGAACAGCAGACGGCTAGAAAGGAAACTATCTTAGGAACAGAATGAAATGGTTAATAATAAAAGAAGGGTAGGAAAAAAACTACCACAAGAAAGAAAAAAGAAACTAAAGAAGAACAAAAAAAACAACCCCTACAAACATACGAAAAGAGATAAAACTAAAACAAAACCTAGATTAGAACGCGTTACGTGAGAAAAGTGAATAAACAAACTGAAGCAGATTGGTTTAAGGCAGCGGAAGAAAAGTGATGCTGCAGCTAGTATCAATAATAGTGGCATCAACACGCAAGAATCTTTTTTTCACTCACAAGAGAAAACACATCAATAAGTCAAACTCTGCAGTATAAATCAACCACATCAAAACACAATCCCCTGGGGCGTCGTCCGCTCTTAGTTATTACGCATTTACTACGCATCACACATAAATCGAAGCTAATTGGATAAGGAAGACATTGACCGTTGGGCAGCTGAAGAAATAGAGGGCTAGCATCCCGCGCCATCCCACGAGCTCTGGAGTGCGGGGGGCACAGGTTTTGTTAGATAAAGATTCGTTTTTTCTCGCCAATCCCAACGCCAACAAGCAGGACAGGATAAGTGGCAGGATGTCTAGGTATAGA-CCCCCCTTTGGCTCATATATCGTTCCGAATTTATTGCTAAAACCATAGCCAATAGTCTTACGGCGATATTAGATCATTCATCCCGAATAGATCCATCATTGCCCTTCCCAAAAACGCACACACACGATTTCCGTCGCGAAACGCGTTGTGTGGGGCTGCAAAACGACCGACGCAGGTCCTTGCTTCTTGCGCATTACGCTTCAAATCGTGTGGCACGTGGCTTTTTCTACACACAACAACTACAACAACACCCCGCTACCAATCTCTCTCTCTCACCATTCTGGGTTTTCTTCTTCACTTTCAACAACAACAACACACGTTCGCACAACGCGGACAAAGGTGGTGGTGATGAATCCTTTGAGTAAGTAAGAATTTAAAGCGACAAAAACCAAACTAAACAAACAAACAAACAAAACGCATTCATACAGAGATACAGACATTTATTCTTATTACCACCTCGAAAAGTTCGCTGTTTGGGGGATGGTTTGTGGAAGTAGTTTGTGGAAACGCTGTGTGCTGTGGCTGCAGGAATGAGATCTGTTCGAAAAACTAGAAGCAAGAGGAGAAGAAGAAGAAGTAAAACAAAAACGTCTCAAATTTATTACAAAACTTGATGAAAGGTAGCAAAAAAATCTGGTAATAAGAAACATTGCGAATGTAGCTATATATAGCAGAGCAGTAAGAGGAGAGGGGGGGAATGAAAGAAGGTATGCAACATTCAAAAGAAGTATATATAAAATAACAAAACAAACAAAACTATTAGAAACTGTAAAATGGAACCAAGAAGAGAGAGAGAAAGAGA] [+] EMBL BM635157 [CCGCGCGCAGTCGCGCTCCCTAGGAGCAAAACATAGCACAAACATAGAACTAATACAACAAGCATAATTGCATAAAACGCGAAACTTGCGGCTATGTAAGTACCGCGAAGGAAGGAGCAAAAACCCGCACGCAAAAGGTGTATCCGAACGAAGAAAAGAGAGAAATAGAAAATCCAAACACGCCAATACGAGAGCAGAAGAAACACTTGGAAACTGGATGAATGAAATTGTACCGCACAAGTGAGGCAAACCTATATCCGCTTTTGACTACCCAAAATAAGTATCTTTTTTGAGTAAACAAAAGAAAAAGAATAAGAAGAAGAAGTAAAACCAATGAGTAAAGAAAAAGGGGTGGTAGTAGGCGCAAAACACACACACATACAAAAACAAACAAACAAACACAAATAATCTAAACAAATACTATAATATTTGACGATAAAAAGAAAGAAACATTTAGAATGAGAAAACCAATGTGACATAAAACAAGTGTGGCAGTGAACAGCAGACGGCTAGAAAGGAAACTATCTTAGGAACAGAATGAAATGGTTAATAATAAAAGAAGGGTAGGAAAAAAACTACCAC ] [+] EMBL BM637854 [ ccgAACCAATGTGACATAAAACAAGTGTGGCAGTGAACAGCAGACGGCTAGAAAGGAAACTATCTTAGGAACAGAATGAAATGGTTAATAATAAAAGAAGGGTAGGAAAAAAACTACAACAAGAAAGAAAAAAGAAACTAAAGAAGAACAAAAAAAACAACCCCTACAAACATACGAAAAGAGATAAAACTAAAACAAAACCTAGATTAGAACGCGTTACGTGAGAAAAGTGAATAAACAAACTGAAGCAGATTGGTTTAAGGCAGCGGAAGAAAAGTGATGCTGCAGCTAGTATCAATAATAGTGGCATCAACACGCAAGAATCTTTTTTTCACTCACAAGAGAAAACACATCAATAAGTCAAACTCTGCAGTATAAATCAACCACATCAAAACACAATCCCCTGGGGCGTCGTCCGCTCTTAGTTATTACGCATTTACTACGCATCACACATAAATCGAAGCTAATTGGATAAGGAAGACATTGACCGTTGGGCAGCTGAAGAAATAGAGGGCTAGCATCCCGCGCCATCCCACGAGCTCTGGAGTGCGGGGGGCACAGGTTTTGTTAGATAAAGATTCGTTTTTTCTCGCCAATCCCAACGCCAACAAGCAGGACAGGATAAGTGGCAGGATGTCTAGGTATAGA CCCCCCTTTGGCTCATATATCGTTCCGAATTTATTGCTAAAACCATAGCCAATAGTCTTACG ] [+] EMBL BM636858 [ ccgCGCTCTTAGTTATTACGCATTTACTACGCATCACACATAAATCGAAGCTAATTGGATAAGGAAGACATTGGACATTGGGCAGCTGAAGAGATAGAGGGGTAGCATCCCGCGCCATCCCACGAGCTCTGGAGTGCGGGGGGCACAGGTTTTGTTAGATAAAGATTCGTTTTTTCTCGCCAATCCCAACGCCAACAAGCAGGGCAGGATAAGTGGCAGGATGTCTAGGTATAAATCCCCCGCTCGGCTGATATATCGTTCCGAATTTATTGCTAAAACCATAACCAATAGTCTTACGGCGATATTAGATCATTCATCCCGAATAGATCCATCATTGCCCTTCCCAAAAACGCACACACACGATTTCCGTCGCGAAACGCGTTGTGTGGGGCTGCAAAACGACCGACGCAGGTCCTTGCTTCTTGCGCATTACGCTTCAAATCGTGTGGCACGTGGCTTTTTCTACACACAACAACTACAACAACACCCCGCTACCAATCTCTCTCTCTCACCATTCTGGGTTTTCTTCTTCA ] [+] EMBL BM584393 [ ccgGACCGACGCAGGTCCTTGCTTCTTGCGCATTACGCTTCAAATCGTGTGGCACGTGGCTTTTTCTACACACAACAACTACAACAACA CCCGCTACCAATCTTTCTCTCTCACCATTCT GGTTTTCTTCTTCACTTTCAACAACAACAACACACGTTCGCACAACGCGGACAAAGGTGGTGGTGATGAATCCTTTGAGTAAGTAAGAATTTAAAGCGACAAAAACCAAACTAAACAAACAAACAAACAAAACGCATTCATACAGAGATACAGACATTTATTCTTATTACCACCTCGAAAAGTTCGCTGTTTGGGGGATGGTTTGTGGAAGTAGTTTGTGGAAACGCTGTGTGCTGTGGCTGCAGGAATGAGATCTGTTCGAAAAACTAGAAGCAAGAGGAGAAGAAGAAGAAGTAAAACAAAAACGTCTCAAATTTATTACAAAACTTGATGAAAGGTAGCAAAAAAATCTGGTAATAAGAAACATTGCGAATGTAGCTATATATAGCAGAGCAGTAAGAGGAGAGGGGGGGAATGAAAGAAGGTATGCAACATTCAAAAGAAGTATATATAAAATAACAAAACAAACAAAACTATTAGAAACTGTAAAATGGAACCAAGAAGAGAGAGAGAAAGAGA] consensusID : consensus_6214#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 589 fasta sequence [CCCACGCGTCCGCAGGCGGCTAGAAAGGAAACTATCTTAGGAACTGAATGAAATGGTTAATAATAAAAAAGGGTAGGAAAAATCTACAACAAGAAAGAAAAAAGAAACTAAAGAAGAACAAAAAAACAACCCCTACAAACATACGAAAAGAGATAAAACTAAAACAAACCCTAGATTAGAACGCGTTACGTGAGAAAAGTGAACAAAAAAACTGAAGCAGATTGGTTTAAGGCAGCGGAAGAAAAGTGATGCTGTAGCTAGTATCAATAATAGTGGCATCAACACGCAAGAATCTTTTTTCTCTCACAAGAGAAAACACATCAATAAGTCAAACTCTGCAGTATAAATCAACCACATCAAAACACAATCCCCTGGGGCGTCGTCCGCTCTTAGTTATTACGCATTTACTACGCATCACACATAAATCGAAGCTAATTGGATAAGGAAGACATTGGACATTGGGCAGCTGAAGAGATAGAGGGGTAGCATCCCGCGCCATCCCACGAGCTCTGGAGTGCGGGGGGCACAGGTTTTGTTAGATAAAGATTCGTTTTTTCTCGCCAATCCCAACGCCAACAAGCAGGGCAGG] [+] EMBL BM647602 [CCCACGCGTCCGCAGGCGGCTAGAAAGGAAACTATCTTAGGAACTGAATGAAATGGTTAATAATAAAAAAGGGTAGGAAAAATCTACAACAAGAAAGAAAAAAGAAACTAAAGAAGAACAAAAAAACAACCCCTACAAACATACGAAAAGAGATAAAACTAAAACAAACCCTAGATTAGAACGCGTTACGTGAGAAAAGTGAACAAAAAAACTGAAGCAGATTGGTTTAAGGCAGCGGAAGAAAAGTGATGCTGTAGCTAGTATCAATAATAGTGGCATCAACACGCAAGAATCTTTTTTCTCTCACAAGAGAAAACACATCAATAAGTCAAACTCTGCAGTATAAATCAACCACATCAAAACACAATCCCCTGGGGCGTCGTCCGCTCTTAGTTATTACGCATTTACTACGCATCACACATAAATCGAAGCTAATTGGATAAGGAAGACATTGGACATTGGGCAGCTGAAGAGATAGAGGGGTAGCATCCCGCGCCATCCCACGAGCTCTGGAGTGCGGGGGGCACAGGTTTTGTTAGATAAAGATTCGTTTTTTCTCGCCAATCCCAACGCCAACAAGCAGGGCAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6214#0 CCGCGCGCAGTCGCGCTCCCTAGGAGCAAAACATAGCACAAACATAGAACTAATACAACA 60 consensus_6214#1 ------------------------------------------------------------ consensus_6214#0 AGCATAATTGCATAAAACGCGAAACTTGCGGCTATGTAAGTACCGCGAAGGAAGGAGCAA 120 consensus_6214#1 ------------------------------------------------------------ consensus_6214#0 AAACCCGCACGCAAAAGGTGTATCCGAACGAAGAAAAGAGAGAAATAGAAAATCCAAACA 180 consensus_6214#1 ------------------------------------------------------------ consensus_6214#0 CGCCAATACGAGAGCAGAAGAAACACTTGGAAACTGGATGAATGAAATTGTACCGCACAA 240 consensus_6214#1 ------------------------------------------------------------ consensus_6214#0 GTGAGGCAAACCTATATCCGCTTTTGACTACCCAAAATAAGTATCTTTTTTGAGTAAACA 300 consensus_6214#1 ------------------------------------------------------------ consensus_6214#0 AAAGAAAAAGAATAAGAAGAAGAAGTAAAACCAATGAGTAAAGAAAAAGGGGTGGTAGTA 360 consensus_6214#1 ------------------------------------------------------------ consensus_6214#0 GGCGCAAAACACACACACATACAAAAACAAACAAACAAACACAAATAATCTAAACAAATA 420 consensus_6214#1 ------------------------------------------------------------ consensus_6214#0 CTATAATATTTGACGATAAAAAGAAAGAAACATTTAGAATGAGAAAACCAATGTGACATA 480 consensus_6214#1 ------------------------------------------------------------ consensus_6214#0 AAACAAGTGTGGCAGTGAACAGCAGACGGCTAGAAAGGAAACTATCTTAGGAACAGAATG 540 consensus_6214#1 ----------CCCACGCGTCCGCAGGCGGCTAGAAAGGAAACTATCTTAGGAACTGAATG 50 ** * **** **************************** ***** consensus_6214#0 AAATGGTTAATAATAAAAGAAGGGTAGGAAAAAAACTACCACAAGAAAGAAAAAAGAAAC 600 consensus_6214#1 AAATGGTTAATAATAAAA-AAGGGTAGGAAAAAT-CTACAACAAGAAAGAAAAAAGAAAC 108 ****************** ************** **** ******************** consensus_6214#0 TAAAGAAGAACAAAAAAAACAACCCCTACAAACATACGAAAAGAGATAAAACTAAAACAA 660 consensus_6214#1 TAAAGAAGAACAAAAAAA-CAACCCCTACAAACATACGAAAAGAGATAAAACTAAAACAA 167 ****************** ***************************************** consensus_6214#0 AACCTAGATTAGAACGCGTTACGTGAGAAAAGTGAATAAACAAACTGAAGCAGATTGGTT 720 consensus_6214#1 ACCCTAGATTAGAACGCGTTACGTGAGAAAAGTGAACAAAAAAACTGAAGCAGATTGGTT 227 * ********************************** *** ******************* consensus_6214#0 TAAGGCAGCGGAAGAAAAGTGATGCTGCAGCTAGTATCAATAATAGTGGCATCAACACGC 780 consensus_6214#1 TAAGGCAGCGGAAGAAAAGTGATGCTGTAGCTAGTATCAATAATAGTGGCATCAACACGC 287 *************************** ******************************** consensus_6214#0 AAGAATCTTTTTTTCACTCACAAGAGAAAACACATCAATAAGTCAAACTCTGCAGTATAA 840 consensus_6214#1 AAGAATCTTTTTT-CTCTCACAAGAGAAAACACATCAATAAGTCAAACTCTGCAGTATAA 346 ************* * ******************************************** consensus_6214#0 ATCAACCACATCAAAACACAATCCCCTGGGGCGTCGTCCGCTCTTAGTTATTACGCATTT 900 consensus_6214#1 ATCAACCACATCAAAACACAATCCCCTGGGGCGTCGTCCGCTCTTAGTTATTACGCATTT 406 ************************************************************ consensus_6214#0 ACTACGCATCACACATAAATCGAAGCTAATTGGATAAGGAAGACATTGACCGTTGGGCAG 960 consensus_6214#1 ACTACGCATCACACATAAATCGAAGCTAATTGGATAAGGAAGACATTGGACATTGGGCAG 466 ************************************************ * ******** consensus_6214#0 CTGAAGAAATAGAGGGCTAGCATCCCGCGCCATCCCACGAGCTCTGGAGTGCGGGGGGCA 1020 consensus_6214#1 CTGAAGAGATAGAGGGGTAGCATCCCGCGCCATCCCACGAGCTCTGGAGTGCGGGGGGCA 526 ******* ******** ******************************************* consensus_6214#0 CAGGTTTTGTTAGATAAAGATTCGTTTTTTCTCGCCAATCCCAACGCCAACAAGCAGGAC 1080 consensus_6214#1 CAGGTTTTGTTAGATAAAGATTCGTTTTTTCTCGCCAATCCCAACGCCAACAAGCAGGGC 586 ********************************************************** * consensus_6214#0 AGGATAAGTGGCAGGATGTCTAGGTATAGACCCCCCTTTGGCTCATATATCGTTCCGAAT 1140 consensus_6214#1 AGG--------------------------------------------------------- 589 *** consensus_6214#0 TTATTGCTAAAACCATAGCCAATAGTCTTACGGCGATATTAGATCATTCATCCCGAATAG 1200 consensus_6214#1 ------------------------------------------------------------ consensus_6214#0 ATCCATCATTGCCCTTCCCAAAAACGCACACACACGATTTCCGTCGCGAAACGCGTTGTG 1260 consensus_6214#1 ------------------------------------------------------------ consensus_6214#0 TGGGGCTGCAAAACGACCGACGCAGGTCCTTGCTTCTTGCGCATTACGCTTCAAATCGTG 1320 consensus_6214#1 ------------------------------------------------------------ consensus_6214#0 TGGCACGTGGCTTTTTCTACACACAACAACTACAACAACACCCCGCTACCAATCTCTCTC 1380 consensus_6214#1 ------------------------------------------------------------ consensus_6214#0 TCTCACCATTCTGGGTTTTCTTCTTCACTTTCAACAACAACAACACACGTTCGCACAACG 1440 consensus_6214#1 ------------------------------------------------------------ consensus_6214#0 CGGACAAAGGTGGTGGTGATGAATCCTTTGAGTAAGTAAGAATTTAAAGCGACAAAAACC 1500 consensus_6214#1 ------------------------------------------------------------ consensus_6214#0 AAACTAAACAAACAAACAAACAAAACGCATTCATACAGAGATACAGACATTTATTCTTAT 1560 consensus_6214#1 ------------------------------------------------------------ consensus_6214#0 TACCACCTCGAAAAGTTCGCTGTTTGGGGGATGGTTTGTGGAAGTAGTTTGTGGAAACGC 1620 consensus_6214#1 ------------------------------------------------------------ consensus_6214#0 TGTGTGCTGTGGCTGCAGGAATGAGATCTGTTCGAAAAACTAGAAGCAAGAGGAGAAGAA 1680 consensus_6214#1 ------------------------------------------------------------ consensus_6214#0 GAAGAAGTAAAACAAAAACGTCTCAAATTTATTACAAAACTTGATGAAAGGTAGCAAAAA 1740 consensus_6214#1 ------------------------------------------------------------ consensus_6214#0 AATCTGGTAATAAGAAACATTGCGAATGTAGCTATATATAGCAGAGCAGTAAGAGGAGAG 1800 consensus_6214#1 ------------------------------------------------------------ consensus_6214#0 GGGGGGAATGAAAGAAGGTATGCAACATTCAAAAGAAGTATATATAAAATAACAAAACAA 1860 consensus_6214#1 ------------------------------------------------------------ consensus_6214#0 ACAAAACTATTAGAAACTGTAAAATGGAACCAAGAAGAGAGAGAGAAAGAGA 1912 consensus_6214#1 ---------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||