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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6214#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1912 fasta sequence
[CCGCGCGCAGTCGCGCTCCCTAGGAGCAAAACATAGCACAAACATAGAACTAATACAACAAGCATAATTGCATAAAACGCGAAACTTGCGGCTATGTAAGTACCGCGAAGGAAGGAGCAAAAACCCGCACGCAAAAGGTGTATCCGAACGAAGAAAAGAGAGAAATAGAAAATCCAAACACGCCAATACGAGAGCAGAAGAAACACTTGGAAACTGGATGAATGAAATTGTACCGCACAAGTGAGGCAAACCTATATCCGCTTTTGACTACCCAAAATAAGTATCTTTTTTGAGTAAACAAAAGAAAAAGAATAAGAAGAAGAAGTAAAACCAATGAGTAAAGAAAAAGGGGTGGTAGTAGGCGCAAAACACACACACATACAAAAACAAACAAACAAACACAAATAATCTAAACAAATACTATAATATTTGACGATAAAAAGAAAGAAACATTTAGAATGAGAAAACCAATGTGACATAAAACAAGTGTGGCAGTGAACAGCAGACGGCTAGAAAGGAAACTATCTTAGGAACAGAATGAAATGGTTAATAATAAAAGAAGGGTAGGAAAAAAACTACCACAAGAAAGAAAAAAGAAACTAAAGAAGAACAAAAAAAACAACCCCTACAAACATACGAAAAGAGATAAAACTAAAACAAAACCTAGATTAGAACGCGTTACGTGAGAAAAGTGAATAAACAAACTGAAGCAGATTGGTTTAAGGCAGCGGAAGAAAAGTGATGCTGCAGCTAGTATCAATAATAGTGGCATCAACACGCAAGAATCTTTTTTTCACTCACAAGAGAAAACACATCAATAAGTCAAACTCTGCAGTATAAATCAACCACATCAAAACACAATCCCCTGGGGCGTCGTCCGCTCTTAGTTATTACGCATTTACTACGCATCACACATAAATCGAAGCTAATTGGATAAGGAAGACATTGACCGTTGGGCAGCTGAAGAAATAGAGGGCTAGCATCCCGCGCCATCCCACGAGCTCTGGAGTGCGGGGGGCACAGGTTTTGTTAGATAAAGATTCGTTTTTTCTCGCCAATCCCAACGCCAACAAGCAGGACAGGATAAGTGGCAGGATGTCTAGGTATAGA-CCCCCCTTTGGCTCATATATCGTTCCGAATTTATTGCTAAAACCATAGCCAATAGTCTTACGGCGATATTAGATCATTCATCCCGAATAGATCCATCATTGCCCTTCCCAAAAACGCACACACACGATTTCCGTCGCGAAACGCGTTGTGTGGGGCTGCAAAACGACCGACGCAGGTCCTTGCTTCTTGCGCATTACGCTTCAAATCGTGTGGCACGTGGCTTTTTCTACACACAACAACTACAACAACACCCCGCTACCAATCTCTCTCTCTCACCATTCTGGGTTTTCTTCTTCACTTTCAACAACAACAACACACGTTCGCACAACGCGGACAAAGGTGGTGGTGATGAATCCTTTGAGTAAGTAAGAATTTAAAGCGACAAAAACCAAACTAAACAAACAAACAAACAAAACGCATTCATACAGAGATACAGACATTTATTCTTATTACCACCTCGAAAAGTTCGCTGTTTGGGGGATGGTTTGTGGAAGTAGTTTGTGGAAACGCTGTGTGCTGTGGCTGCAGGAATGAGATCTGTTCGAAAAACTAGAAGCAAGAGGAGAAGAAGAAGAAGTAAAACAAAAACGTCTCAAATTTATTACAAAACTTGATGAAAGGTAGCAAAAAAATCTGGTAATAAGAAACATTGCGAATGTAGCTATATATAGCAGAGCAGTAAGAGGAGAGGGGGGGAATGAAAGAAGGTATGCAACATTCAAAAGAAGTATATATAAAATAACAAAACAAACAAAACTATTAGAAACTGTAAAATGGAACCAAGAAGAGAGAGAGAAAGAGA]
[+] EMBL BM635157 [CCGCGCGCAGTCGCGCTCCCTAGGAGCAAAACATAGCACAAACATAGAACTAATACAACAAGCATAATTGCATAAAACGCGAAACTTGCGGCTATGTAAGTACCGCGAAGGAAGGAGCAAAAACCCGCACGCAAAAGGTGTATCCGAACGAAGAAAAGAGAGAAATAGAAAATCCAAACACGCCAATACGAGAGCAGAAGAAACACTTGGAAACTGGATGAATGAAATTGTACCGCACAAGTGAGGCAAACCTATATCCGCTTTTGACTACCCAAAATAAGTATCTTTTTTGAGTAAACAAAAGAAAAAGAATAAGAAGAAGAAGTAAAACCAATGAGTAAAGAAAAAGGGGTGGTAGTAGGCGCAAAACACACACACATACAAAAACAAACAAACAAACACAAATAATCTAAACAAATACTATAATATTTGACGATAAAAAGAAAGAAACATTTAGAATGAGAAAACCAATGTGACATAAAACAAGTGTGGCAGTGAACAGCAGACGGCTAGAAAGGAAACTATCTTAGGAACAGAATGAAATGGTTAATAATAAAAGAAGGGTAGGAAAAAAACTACCAC ]
[+] EMBL BM637854 [ ccgAACCAATGTGACATAAAACAAGTGTGGCAGTGAACAGCAGACGGCTAGAAAGGAAACTATCTTAGGAACAGAATGAAATGGTTAATAATAAAAGAAGGGTAGGAAAAAAACTACAACAAGAAAGAAAAAAGAAACTAAAGAAGAACAAAAAAAACAACCCCTACAAACATACGAAAAGAGATAAAACTAAAACAAAACCTAGATTAGAACGCGTTACGTGAGAAAAGTGAATAAACAAACTGAAGCAGATTGGTTTAAGGCAGCGGAAGAAAAGTGATGCTGCAGCTAGTATCAATAATAGTGGCATCAACACGCAAGAATCTTTTTTTCACTCACAAGAGAAAACACATCAATAAGTCAAACTCTGCAGTATAAATCAACCACATCAAAACACAATCCCCTGGGGCGTCGTCCGCTCTTAGTTATTACGCATTTACTACGCATCACACATAAATCGAAGCTAATTGGATAAGGAAGACATTGACCGTTGGGCAGCTGAAGAAATAGAGGGCTAGCATCCCGCGCCATCCCACGAGCTCTGGAGTGCGGGGGGCACAGGTTTTGTTAGATAAAGATTCGTTTTTTCTCGCCAATCCCAACGCCAACAAGCAGGACAGGATAAGTGGCAGGATGTCTAGGTATAGA CCCCCCTTTGGCTCATATATCGTTCCGAATTTATTGCTAAAACCATAGCCAATAGTCTTACG ]
[+] EMBL BM636858 [ ccgCGCTCTTAGTTATTACGCATTTACTACGCATCACACATAAATCGAAGCTAATTGGATAAGGAAGACATTGGACATTGGGCAGCTGAAGAGATAGAGGGGTAGCATCCCGCGCCATCCCACGAGCTCTGGAGTGCGGGGGGCACAGGTTTTGTTAGATAAAGATTCGTTTTTTCTCGCCAATCCCAACGCCAACAAGCAGGGCAGGATAAGTGGCAGGATGTCTAGGTATAAATCCCCCGCTCGGCTGATATATCGTTCCGAATTTATTGCTAAAACCATAACCAATAGTCTTACGGCGATATTAGATCATTCATCCCGAATAGATCCATCATTGCCCTTCCCAAAAACGCACACACACGATTTCCGTCGCGAAACGCGTTGTGTGGGGCTGCAAAACGACCGACGCAGGTCCTTGCTTCTTGCGCATTACGCTTCAAATCGTGTGGCACGTGGCTTTTTCTACACACAACAACTACAACAACACCCCGCTACCAATCTCTCTCTCTCACCATTCTGGGTTTTCTTCTTCA ]
[+] EMBL BM584393 [ ccgGACCGACGCAGGTCCTTGCTTCTTGCGCATTACGCTTCAAATCGTGTGGCACGTGGCTTTTTCTACACACAACAACTACAACAACA CCCGCTACCAATCTTTCTCTCTCACCATTCT GGTTTTCTTCTTCACTTTCAACAACAACAACACACGTTCGCACAACGCGGACAAAGGTGGTGGTGATGAATCCTTTGAGTAAGTAAGAATTTAAAGCGACAAAAACCAAACTAAACAAACAAACAAACAAAACGCATTCATACAGAGATACAGACATTTATTCTTATTACCACCTCGAAAAGTTCGCTGTTTGGGGGATGGTTTGTGGAAGTAGTTTGTGGAAACGCTGTGTGCTGTGGCTGCAGGAATGAGATCTGTTCGAAAAACTAGAAGCAAGAGGAGAAGAAGAAGAAGTAAAACAAAAACGTCTCAAATTTATTACAAAACTTGATGAAAGGTAGCAAAAAAATCTGGTAATAAGAAACATTGCGAATGTAGCTATATATAGCAGAGCAGTAAGAGGAGAGGGGGGGAATGAAAGAAGGTATGCAACATTCAAAAGAAGTATATATAAAATAACAAAACAAACAAAACTATTAGAAACTGTAAAATGGAACCAAGAAGAGAGAGAGAAAGAGA]
consensusID : consensus_6214#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 589 fasta sequence
[CCCACGCGTCCGCAGGCGGCTAGAAAGGAAACTATCTTAGGAACTGAATGAAATGGTTAATAATAAAAAAGGGTAGGAAAAATCTACAACAAGAAAGAAAAAAGAAACTAAAGAAGAACAAAAAAACAACCCCTACAAACATACGAAAAGAGATAAAACTAAAACAAACCCTAGATTAGAACGCGTTACGTGAGAAAAGTGAACAAAAAAACTGAAGCAGATTGGTTTAAGGCAGCGGAAGAAAAGTGATGCTGTAGCTAGTATCAATAATAGTGGCATCAACACGCAAGAATCTTTTTTCTCTCACAAGAGAAAACACATCAATAAGTCAAACTCTGCAGTATAAATCAACCACATCAAAACACAATCCCCTGGGGCGTCGTCCGCTCTTAGTTATTACGCATTTACTACGCATCACACATAAATCGAAGCTAATTGGATAAGGAAGACATTGGACATTGGGCAGCTGAAGAGATAGAGGGGTAGCATCCCGCGCCATCCCACGAGCTCTGGAGTGCGGGGGGCACAGGTTTTGTTAGATAAAGATTCGTTTTTTCTCGCCAATCCCAACGCCAACAAGCAGGGCAGG]
[+] EMBL BM647602 [CCCACGCGTCCGCAGGCGGCTAGAAAGGAAACTATCTTAGGAACTGAATGAAATGGTTAATAATAAAAAAGGGTAGGAAAAATCTACAACAAGAAAGAAAAAAGAAACTAAAGAAGAACAAAAAAACAACCCCTACAAACATACGAAAAGAGATAAAACTAAAACAAACCCTAGATTAGAACGCGTTACGTGAGAAAAGTGAACAAAAAAACTGAAGCAGATTGGTTTAAGGCAGCGGAAGAAAAGTGATGCTGTAGCTAGTATCAATAATAGTGGCATCAACACGCAAGAATCTTTTTTCTCTCACAAGAGAAAACACATCAATAAGTCAAACTCTGCAGTATAAATCAACCACATCAAAACACAATCCCCTGGGGCGTCGTCCGCTCTTAGTTATTACGCATTTACTACGCATCACACATAAATCGAAGCTAATTGGATAAGGAAGACATTGGACATTGGGCAGCTGAAGAGATAGAGGGGTAGCATCCCGCGCCATCCCACGAGCTCTGGAGTGCGGGGGGCACAGGTTTTGTTAGATAAAGATTCGTTTTTTCTCGCCAATCCCAACGCCAACAAGCAGGGCAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6214#0 CCGCGCGCAGTCGCGCTCCCTAGGAGCAAAACATAGCACAAACATAGAACTAATACAACA 60
consensus_6214#1 ------------------------------------------------------------
consensus_6214#0 AGCATAATTGCATAAAACGCGAAACTTGCGGCTATGTAAGTACCGCGAAGGAAGGAGCAA 120
consensus_6214#1 ------------------------------------------------------------
consensus_6214#0 AAACCCGCACGCAAAAGGTGTATCCGAACGAAGAAAAGAGAGAAATAGAAAATCCAAACA 180
consensus_6214#1 ------------------------------------------------------------
consensus_6214#0 CGCCAATACGAGAGCAGAAGAAACACTTGGAAACTGGATGAATGAAATTGTACCGCACAA 240
consensus_6214#1 ------------------------------------------------------------
consensus_6214#0 GTGAGGCAAACCTATATCCGCTTTTGACTACCCAAAATAAGTATCTTTTTTGAGTAAACA 300
consensus_6214#1 ------------------------------------------------------------
consensus_6214#0 AAAGAAAAAGAATAAGAAGAAGAAGTAAAACCAATGAGTAAAGAAAAAGGGGTGGTAGTA 360
consensus_6214#1 ------------------------------------------------------------
consensus_6214#0 GGCGCAAAACACACACACATACAAAAACAAACAAACAAACACAAATAATCTAAACAAATA 420
consensus_6214#1 ------------------------------------------------------------
consensus_6214#0 CTATAATATTTGACGATAAAAAGAAAGAAACATTTAGAATGAGAAAACCAATGTGACATA 480
consensus_6214#1 ------------------------------------------------------------
consensus_6214#0 AAACAAGTGTGGCAGTGAACAGCAGACGGCTAGAAAGGAAACTATCTTAGGAACAGAATG 540
consensus_6214#1 ----------CCCACGCGTCCGCAGGCGGCTAGAAAGGAAACTATCTTAGGAACTGAATG 50
** * **** **************************** *****
consensus_6214#0 AAATGGTTAATAATAAAAGAAGGGTAGGAAAAAAACTACCACAAGAAAGAAAAAAGAAAC 600
consensus_6214#1 AAATGGTTAATAATAAAA-AAGGGTAGGAAAAAT-CTACAACAAGAAAGAAAAAAGAAAC 108
****************** ************** **** ********************
consensus_6214#0 TAAAGAAGAACAAAAAAAACAACCCCTACAAACATACGAAAAGAGATAAAACTAAAACAA 660
consensus_6214#1 TAAAGAAGAACAAAAAAA-CAACCCCTACAAACATACGAAAAGAGATAAAACTAAAACAA 167
****************** *****************************************
consensus_6214#0 AACCTAGATTAGAACGCGTTACGTGAGAAAAGTGAATAAACAAACTGAAGCAGATTGGTT 720
consensus_6214#1 ACCCTAGATTAGAACGCGTTACGTGAGAAAAGTGAACAAAAAAACTGAAGCAGATTGGTT 227
* ********************************** *** *******************
consensus_6214#0 TAAGGCAGCGGAAGAAAAGTGATGCTGCAGCTAGTATCAATAATAGTGGCATCAACACGC 780
consensus_6214#1 TAAGGCAGCGGAAGAAAAGTGATGCTGTAGCTAGTATCAATAATAGTGGCATCAACACGC 287
*************************** ********************************
consensus_6214#0 AAGAATCTTTTTTTCACTCACAAGAGAAAACACATCAATAAGTCAAACTCTGCAGTATAA 840
consensus_6214#1 AAGAATCTTTTTT-CTCTCACAAGAGAAAACACATCAATAAGTCAAACTCTGCAGTATAA 346
************* * ********************************************
consensus_6214#0 ATCAACCACATCAAAACACAATCCCCTGGGGCGTCGTCCGCTCTTAGTTATTACGCATTT 900
consensus_6214#1 ATCAACCACATCAAAACACAATCCCCTGGGGCGTCGTCCGCTCTTAGTTATTACGCATTT 406
************************************************************
consensus_6214#0 ACTACGCATCACACATAAATCGAAGCTAATTGGATAAGGAAGACATTGACCGTTGGGCAG 960
consensus_6214#1 ACTACGCATCACACATAAATCGAAGCTAATTGGATAAGGAAGACATTGGACATTGGGCAG 466
************************************************ * ********
consensus_6214#0 CTGAAGAAATAGAGGGCTAGCATCCCGCGCCATCCCACGAGCTCTGGAGTGCGGGGGGCA 1020
consensus_6214#1 CTGAAGAGATAGAGGGGTAGCATCCCGCGCCATCCCACGAGCTCTGGAGTGCGGGGGGCA 526
******* ******** *******************************************
consensus_6214#0 CAGGTTTTGTTAGATAAAGATTCGTTTTTTCTCGCCAATCCCAACGCCAACAAGCAGGAC 1080
consensus_6214#1 CAGGTTTTGTTAGATAAAGATTCGTTTTTTCTCGCCAATCCCAACGCCAACAAGCAGGGC 586
********************************************************** *
consensus_6214#0 AGGATAAGTGGCAGGATGTCTAGGTATAGACCCCCCTTTGGCTCATATATCGTTCCGAAT 1140
consensus_6214#1 AGG--------------------------------------------------------- 589
***
consensus_6214#0 TTATTGCTAAAACCATAGCCAATAGTCTTACGGCGATATTAGATCATTCATCCCGAATAG 1200
consensus_6214#1 ------------------------------------------------------------
consensus_6214#0 ATCCATCATTGCCCTTCCCAAAAACGCACACACACGATTTCCGTCGCGAAACGCGTTGTG 1260
consensus_6214#1 ------------------------------------------------------------
consensus_6214#0 TGGGGCTGCAAAACGACCGACGCAGGTCCTTGCTTCTTGCGCATTACGCTTCAAATCGTG 1320
consensus_6214#1 ------------------------------------------------------------
consensus_6214#0 TGGCACGTGGCTTTTTCTACACACAACAACTACAACAACACCCCGCTACCAATCTCTCTC 1380
consensus_6214#1 ------------------------------------------------------------
consensus_6214#0 TCTCACCATTCTGGGTTTTCTTCTTCACTTTCAACAACAACAACACACGTTCGCACAACG 1440
consensus_6214#1 ------------------------------------------------------------
consensus_6214#0 CGGACAAAGGTGGTGGTGATGAATCCTTTGAGTAAGTAAGAATTTAAAGCGACAAAAACC 1500
consensus_6214#1 ------------------------------------------------------------
consensus_6214#0 AAACTAAACAAACAAACAAACAAAACGCATTCATACAGAGATACAGACATTTATTCTTAT 1560
consensus_6214#1 ------------------------------------------------------------
consensus_6214#0 TACCACCTCGAAAAGTTCGCTGTTTGGGGGATGGTTTGTGGAAGTAGTTTGTGGAAACGC 1620
consensus_6214#1 ------------------------------------------------------------
consensus_6214#0 TGTGTGCTGTGGCTGCAGGAATGAGATCTGTTCGAAAAACTAGAAGCAAGAGGAGAAGAA 1680
consensus_6214#1 ------------------------------------------------------------
consensus_6214#0 GAAGAAGTAAAACAAAAACGTCTCAAATTTATTACAAAACTTGATGAAAGGTAGCAAAAA 1740
consensus_6214#1 ------------------------------------------------------------
consensus_6214#0 AATCTGGTAATAAGAAACATTGCGAATGTAGCTATATATAGCAGAGCAGTAAGAGGAGAG 1800
consensus_6214#1 ------------------------------------------------------------
consensus_6214#0 GGGGGGAATGAAAGAAGGTATGCAACATTCAAAAGAAGTATATATAAAATAACAAAACAA 1860
consensus_6214#1 ------------------------------------------------------------
consensus_6214#0 ACAAAACTATTAGAAACTGTAAAATGGAACCAAGAAGAGAGAGAGAAAGAGA 1912
consensus_6214#1 ----------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||