These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6217#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 734 fasta sequence [TAGTAGAATTCAAATCGTAAGATAATTCATTTTATTTCAACTATAGAAAATCAACCTATCAAAACTGAACACGGCTGCCGAAAAAGGAAACAAACGATAAAATGAAATGTTGTGAAACTTGTAACCGCGTGATCCCCCGGGGGCTTCACA-TTCAATCTTAATGAATTTGTTTTGCACAAACGTGCAGAACCTAAACATGAAATTCAATAGCATCACAA-TTAATTCAATTCTAGCTACTAGCGGCCGTGTTAAACACAGAGAAATAAAATGCAATTTAAGCATTGCAAAGAAAAGCAAAATAATTCAAGAAACACATGCCGGATTATACTACACGTCATTCGGTGCGCTGAAGAGATAGTCCCACGGGAAGATCGTGAGAGACCTCGCGCAAAGAATACGCTGTCGTTTGTGTGACTAGGAAAAACGATTACTGTTGCTCGCGATCGGGTGTTGCCGCTGGTGCCCTGGCCAATGCCGTTCGCGACAGTCGGTCGTACAGTAGGACGTATTCCAGCAGCACGGAATTCGGGCTTCCTTTTCACACACCACGCACCATTGCCTTTTCTTAATTTCACTTATTTGGTGCTGGTGCGTTTCCTTCAACCATTCCAGTTTGCGGGCAAAGTGCTGCTCTTTGTTCTGCAGCAGCTTTAGAGCGACCTGTATCGTTTCCTCCAGATTGGTTACTTGTTGAAACAGTTGCTTAGCCGAAATGCCATCGTGCCGGATTCTGC] [+] EMBL BX611600 [TAGTAGAATTCAAATCGTAAGATAATTCATTTTATTTCAACTATAGAAAATCAACCTATCAAAACTGAACACGGCTGCCGAAAAAGGAAACAAACGATAAAATGAAATGTTGTGAAACTTGTAACCGCGTGATCCCCCGGGGGCTTCACA TTCAATCTTAATGAATTTGTTTTGCACAAACGTGCAGAACCTAAACATGAAATTCAATAGCATCACAA TTAATTCAATTCTAGCTACTAGCGGCCGTGTTAAACACAGAGAAATAAAAT ] [+] EMBL AGA280175 [ tttttttTAAGATAATTCATTTTATTTCAACTATAGAAAATCAACCTATCAAAACTGAACACGGCTGCAGAAAAAGGAAACAAACGATAAAATGAAATGTTGTGAAACTTGTAACCGCGTGATCCCCCGGNGGCTTCACA TTCAATCTTAATGAATTTGTTTTGCACAAACGTGCAGAACCTAAACATGAAATTCAATAGCATCACAA TTAATTCAATTCTAGCTACTAGCGGCCGTGTTAAACACAGAGAAATAAAATGCAATTTAAGCATTGCAAAGAAAAGCAAAATAATTCAAGAAACACATGCCGGATTATACT ] [-] EMBL BX468823 [ GTGAAACTTGTAACCGCGTGATCCCCCGGGGGCTTCACACTTCAATCTTAATGAATTTGTTTTGCACAAACGTGCAGAACCTAAACATGAAATTCAATAGCATCACAACTTAATTCAATTCTAGCTACTAGCGGCCGTGTTAAACACAGAGAAATCAAATGCAATTTAGGCATTGCAAAGAAAAGCAAAATAATTCAAGAAACACATGCCGGATTATACTACACGTCATTCGGTGCGCTGAAGAGATAGTCCCACGGGAAGATCGTGAGAGACCTCGCGCAAAGAATACGCTGTCGTTTGTGTGACTAGGAAAAACGATTACTGTTGCTCGCGATCGGGTGTTGCCGCTGGTGCCCTGGCCAATGCCGTTCGCGACAGTCGGTCGTACAGTAGGACGTATTCCAGCAGCACGGAATTCGGGCTTCCTTTTCACACACCACGCACCATTGCCTTTTCTTAATTTCACTTATTTGGTGCTGGTGCGTTTCCTTCAACCATTCCAGTTTGCGGGCAAAGTGCTGCTCTTTGTTCTGCAGCAGCTTTAGAGCGACCTGTATCGTTTCCTCCAGATTGGTTACTTGTTGAAACAGTTGCTTAGCCGAAATGCCATCGTGCCGGATTCTGC] consensusID : consensus_6217#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 680 fasta sequence [TAATTCAAGAAACACATGCCGGGATTATACTACACGTCATTCGGTGCGCTGAAGAGATAGTCCCACGGGAAGATCGTGAGAGACCTCGCGCAAAGAATACGCTGTCGTTTGTGTGACTAGGAAAAACGATTACTGTGGCTCGCGATCGGGTGTTGCCGCTGGTGCCCTGGCCAATGCCGTTCGCGGCAGTCGGTCGTACAGTAGGACGTATTCCAGCAGCACGCAATTCGGGCTTCCTTTTCACACACCACGCACCATTGCCTTTTCTTAATTTCACTTATTTGGTGCTGGTGCGTTTCCTTCAACCATTCCAGTTTGCGGGCAAAGTGCTGCTCTTTGTTCTGCAGCAGCTTTAGAGCGACCTGTTTCGTTTCCTCCAGATCGGTTACTTGTTGAAACAGTTGCTTTAGCCGAAATGTGTCGTATTTTTCCGGGAACCGTAGAATTTCATTCTGCTTCGTGCGAGCTACTCGCGTAGAGCTGGAAGCGCCTACCTCACCATCGTACCCGTTATGATTGCCATCGAGCGCGCAGTCCAACTGCTGTAGAGGAAGCTCGACCGAATCCTGCTCGGGCGATTGGGCGACTGCTTGAGTGCTGGAGCGTGTCTTTTTGGCTGGTGTATGCTGATGGGAGGCCGTTTCCCGACGTTTTGACCGCGTCGATATAGTACTGCCCGG] [-] EMBL BM613026 [TAATTCAAGAAACACATGCCGGGATTATACTACACGTCATTCGGTGCGCTGAAGAGATAGTCCCACGGGAAGATCGTGAGAGACCTCGCGCAAAGAATACGCTGTCGTTTGTGTGACTAGGAAAAACGATTACTGTGGCTCGCGATCGGGTGTTGCCGCTGGTGCCCTGGCCAATGCCGTTCGCGGCAGTCGGTCGTACAGTAGGACGTATTCCAGCAGCACGCAATTCGGGCTTCCTTTTCACACACCACGCACCATTGCCTTTTCTTAATTTCACTTATTTGGTGCTGGTGCGTTTCCTTCAACCATTCCAGTTTGCGGGCAAAGTGCTGCTCTTTGTTCTGCAGCAGCTTTAGAGCGACCTGTTTCGTTTCCTCCAGATCGGTTACTTGTTGAAACAGTTGCTTTAGCCGAAATGTGTCGTATTTTTCCGGGAACCGTAGAATTTCATTCTGCTTCGTGCGAGCTACTCGCGTAGAGCTGGAAGCGCCTACCTCACCATCGTACCCGTTATGATTGCCATCGAGCGCGCAGTCCAACTGCTGTAGAGGAAGCTCGACCGAATCCTGCTCGGGCGATTGGGCGACTGCTTGAGTGCTGGAGCGTGTCTTTTTGGCTGGTGTATGCTGATGGGAGGCCGTTTCCCGACGTTTTGACCGCGTCGATATAGTACTGCCCGG] [-] EMBL AGA281875 [ GTACCCGTTATGATTGCCATCGAGCGCGCAGTCCAACTGCTGTAGAGGAAGCTCGACCGAATCCTGCTCGGGCGATTGGGCGACTGCTTGAGTGCTGGAGCGTGTCTTTTTGGCTGGTGTATGCTGATGGGAGGCCGTTTCCCGACGTTTTGACCGCGTCGATATAGTACTGCCatt] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6217#0 TAGTAGAATTCAAATCGTAAGATAATTCATTTTATTTCAACTATAGAAAATCAACCTATC 60 consensus_6217#1 ------------------------------------------------------------ consensus_6217#0 AAAACTGAACACGGCTGCCGAAAAAGGAAACAAACGATAAAATGAAATGTTGTGAAACTT 120 consensus_6217#1 ------------------------------------------------------------ consensus_6217#0 GTAACCGCGTGATCCCCCGGGGGCTTCACATTCAATCTTAATGAATTTGTTTTGCACAAA 180 consensus_6217#1 ------------------------------------------------------------ consensus_6217#0 CGTGCAGAACCTAAACATGAAATTCAATAGCATCACAATTAATTCAATTCTAGCTACTAG 240 consensus_6217#1 ------------------------------------------------------------ consensus_6217#0 CGGCCGTGTTAAACACAGAGAAATAAAATGCAATTTAAGCATTGCAAAGAAAAGCAAAAT 300 consensus_6217#1 -----------------------------------------------------------T 1 * consensus_6217#0 AATTCAAGAAACACATGCCGG-ATTATACTACACGTCATTCGGTGCGCTGAAGAGATAGT 359 consensus_6217#1 AATTCAAGAAACACATGCCGGGATTATACTACACGTCATTCGGTGCGCTGAAGAGATAGT 61 ********************* ************************************** consensus_6217#0 CCCACGGGAAGATCGTGAGAGACCTCGCGCAAAGAATACGCTGTCGTTTGTGTGACTAGG 419 consensus_6217#1 CCCACGGGAAGATCGTGAGAGACCTCGCGCAAAGAATACGCTGTCGTTTGTGTGACTAGG 121 ************************************************************ consensus_6217#0 AAAAACGATTACTGTTGCTCGCGATCGGGTGTTGCCGCTGGTGCCCTGGCCAATGCCGTT 479 consensus_6217#1 AAAAACGATTACTGTGGCTCGCGATCGGGTGTTGCCGCTGGTGCCCTGGCCAATGCCGTT 181 *************** ******************************************** consensus_6217#0 CGCGACAGTCGGTCGTACAGTAGGACGTATTCCAGCAGCACGGAATTCGGGCTTCCTTTT 539 consensus_6217#1 CGCGGCAGTCGGTCGTACAGTAGGACGTATTCCAGCAGCACGCAATTCGGGCTTCCTTTT 241 **** ************************************* ***************** consensus_6217#0 CACACACCACGCACCATTGCCTTTTCTTAATTTCACTTATTTGGTGCTGGTGCGTTTCCT 599 consensus_6217#1 CACACACCACGCACCATTGCCTTTTCTTAATTTCACTTATTTGGTGCTGGTGCGTTTCCT 301 ************************************************************ consensus_6217#0 TCAACCATTCCAGTTTGCGGGCAAAGTGCTGCTCTTTGTTCTGCAGCAGCTTTAGAGCGA 659 consensus_6217#1 TCAACCATTCCAGTTTGCGGGCAAAGTGCTGCTCTTTGTTCTGCAGCAGCTTTAGAGCGA 361 ************************************************************ consensus_6217#0 CCTGTATCGTTTCCTCCAGATTGGTTACTTGTTGAAACAGTTGCTT-AGCCGAAATGC-- 716 consensus_6217#1 CCTGTTTCGTTTCCTCCAGATCGGTTACTTGTTGAAACAGTTGCTTTAGCCGAAATGTGT 421 ***** *************** ************************ ********** consensus_6217#0 --CATCGTGCCGGATTCTGC---------------------------------------- 734 consensus_6217#1 CGTATTTTTCCGGGAACCGTAGAATTTCATTCTGCTTCGTGCGAGCTACTCGCGTAGAGC 481 ** * **** * * consensus_6217#0 ------------------------------------------------------------ consensus_6217#1 TGGAAGCGCCTACCTCACCATCGTACCCGTTATGATTGCCATCGAGCGCGCAGTCCAACT 541 consensus_6217#0 ------------------------------------------------------------ consensus_6217#1 GCTGTAGAGGAAGCTCGACCGAATCCTGCTCGGGCGATTGGGCGACTGCTTGAGTGCTGG 601 consensus_6217#0 ------------------------------------------------------------ consensus_6217#1 AGCGTGTCTTTTTGGCTGGTGTATGCTGATGGGAGGCCGTTTCCCGACGTTTTGACCGCG 661 consensus_6217#0 ------------------- consensus_6217#1 TCGATATAGTACTGCCCGG 680 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||