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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6223#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 929 fasta sequence
[CCGGCGCCACTAGCAGCGCAGTGGGTTCGTCGGTGGCGGAACCGAAATGATGCATTTTACGGCGGCGATACAGCAGCGTACGTAATATGAGCGTCATTTATTTATTACTATTTTCCTTCAAATTTCCCTCCTGTCCTCCCAGAACTGTTATGTAGTCCAATGTTAGTCTATCCTTTTCTCCTCCGTGCAAGGGCATCGGCCTAATCGGTCGTTCCTATTGCCTTTATTCATTTGGAGGGGGTAAGGGGAAGGGGTTAATTTGTCGTTCTGAGTTTAAATGTTACAGTGGCAATATTTCTATTCCTTTATCATACTTCGTTGAACCCGTTTTGTTGCTTTATGTTGAAGAAAGTAGGTTAAGCTGAGGCAGCGAGACAGAAAGAGAGAGAGAGAGAGTGAGAAGTTACGTTTGCAAATGGTTTCCTTTGTTACGATCGGTGTTACAAGATTGAGATTGAGACAATGAAGGTTTAAAATCGAACGCGAGGCAATCGAATAAGCAACTTGACGTTGACCAGGGCCTTTTTCTTCCTTCTATTCATTCCCTTTTTTCGATAAATTATACAAAAAAAACAACAATATAAAGAAAATAAAACCCCCGGGGGCAATGGGGGCAGTCCTGTTTAATAAGAAAGCGTGAACCGTGTAAACGACAAGCCATTAGGGACGCGAGAGGTGGTACGGGAGGCGTTGCGCGTCTTTGCGACGGACCAAAAACCAACGAATCAAAACCGCAGCTAGGGTGTTAACTGGTGGGGGGCTGGATTTCCTTCACCGCGGAAGGATGTACGAGCGCCGATAGGTTAGGGGAATGTACGCGCGTGGGCAAATAATGTAAGAAAACAAAGCTCTAGTGAAAAAAAAACAAAATTAAACATCGGTATTTGCAAAATTGGAAACGACAAACAACCAACATAACGATGCGACAG]
[+] EMBL BM616931 [CCGGCGCCACTAGCAGCGCAGTGGGTTCGTCGGTGGCGGAACCGAAATGATGCATTTTACGGCGGCGATACAGCAGCGTACGTAATATGAGCGTCATTTATTTATTACTATTTTCCTTCAAATTTCCCTCCTGTCCTCCCAGAACTGTTATGTAGTCCAATGTTAGTCTATCCTTTTCTCCTCCGTGCAAGGGCATCGGCCTAATCGGTCGTTCCTATTGCCTTTATTCATTTGGAGGGGGTAAGGGGAAGGGGTTAATTTGTCGTTCTGAGTTTAAATGTTACAGTGGCAATATTTCTATTCCTTTATCATACTTCGTTGAACCCGTTTTGTTGCTTTATGTTGAAGAAAGTAGGTTAAGCTGAGGCAGCGAGACAGAAAGAGAGAGAGAGAGAGTGAGAAGTTACGTTTGCAAATGGTTTCCTTTGTTACGATCGGTGTTACAAGATTGAGATTGAGACAATGAAGGTTTAAAATCGAACGCGAGGCAATCGAATAAGCAACTTGACGTT ]
[+] EMBL BM595014 [ ccGGGTTAATTTGTCGTTCTGAGTTTAAATGTTACAGTGGCAATATTTCTATTCCTTTATCATACTTCGTTGAACCCGTTTTGTTGCTTTATGTTGAAGAAAGTAGGTTAAGCTGAGGCAGCGAGACAGAAAGAGAGAGAGAGAGAGTGAGAAGTTACGTTTGCAAATGGTTTCCTTTGTTACGATCGGTGTTACAAGATTGAGATTGAGACAATGAAGGTTTAAAATCGAACGCGAGGCAATCGAATAAGCAACTTGACGTTGACCAGGGCCTTTTTCTTCCTTCTATTCATTCCCTTTTTTCGATAAATTATACAAAAAAAACAACAATATAAAGAAAATAAAACCCCCGGGGGCAATGGGGGCAGTCCTGTTTAATAAGAAAGCGTGAACCGTGTAAACGACAAGCCATTAGGGACGCGAGAGGTGGTACGGGAGGCGTTGCGCGTCTTTGCGACGGACCAAAAACCAACGAATCAAAACCGCAGCTAGGGTGTTAACTGGTGGGGGGCTGGATTTCCTTCACCGCGGAAGGATGTACGAGCGCCGATAGGTTAGGGGAATGTACGCGCGTGGGCAAATAATGTAAGAAAACAAAGCTCTAGTGAAAAAAAAACAAAATTAAACATCGGTATTTGCAAAATTGGAAACGACAAACAACCAACATAACGATGCGACAG]
[+] EMBL BM648276 [ ccgAGCTGAGGCAGCGAGACAGAAAGAGAGAGAGAGAGAGTGAGAAGGTACGTTTGCAAATGGTTTCCTTTGTTACGATCGGTGTTACATGATTGAGATTGAGACAATGAAGGTTTAAAATAGAACGCGAGGCAATCGAATAAGCAACTTGACGTTGACCAGGGCCTTTTTCTTCCTTCTATTCATTCCCTTTTTTCGATAAATTATAC ]
consensusID : consensus_6223#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 796 fasta sequence
[TCCCCGAGGTTAACAGCGGCTGAAGAGCGAAGAGCGACCTCGCTGGCCACGTTCCACGATGCGAAGCACAGTATCGTCGGGATGGATTTGGACGAGCCGCGGAAAAGATTGCTGACCGTCGGGCAGGACCGTATTATCAAGATTTGGGACCTCTCCTCGATCTGGGGTTAGTAGTGGCGATTGGCGGGCGAAAACACGCGCGGCTCCGGTAACGTCTAACGAAGGACCACGCCGCGGAACAATTCAAAACAACGGCAAAAAGGCGCCACTAGCAGCGCAGTGGGTTCGTCGGTGGCGGAACCGAAATGATGCATTTTACGGCGGCGATACAGCAGCGTACGTAATATGAGCGTCATCTTATTTATTACTATTTTCCTTCAAATTTCCCTCCTGTCCTCCCAGAACTGTTATGTAGTCCAATGTTAGTCTATCCTTTATCCCCTCCGCTGCAAGAGGCATCGGGCCTAATCGCGCTGGTTCCTATTGCCTCTCTATATCATTTGGCAGGCGGGTAAGAAGGCAAGCGCCGCTTAACTTTGTCGATTCCTGAGCTTTAAATGTTACAGTGGCAATATTTCTATTCCTTTATCATACTTCGTTGTAAGCCCGTTTCGTTGCTTTAGTGTTGAAGAAAGTAGGTTAAGCTGAGGCAGCGAGACAGAAAGAGAGAGAGAGAGAGTGAGAAGGTACGTTGCAAAATGGTTTCCCTTTGGTTACGATCGGCTGTTTACATGATTGANGCACTNNGCACGACANACTNGCACACGCTCCNNCCCACTAGAACGCGAGGCCAATC]
[+] EMBL AL932976 [TCCCCGAGGTTAACAGCGGCTGAAGAGCGAAGAGCGACCTCGCTGGCCACGTTCCACGATGCGAAGCACAGTATCGTCGGGATGGATTTGGACGAGCCGCGGAAAAGATTGCTGACCGTCGGGCAGGACCGTATTATCAAGATTTGGGACCTCTCCTCGATCTGGGGTTAGTAGTGGCGATTGGCGGGCGAAAACACGCGCGGCTCCGGTAACGTCTAACGAAGGACCACGCCGCGGAACAATTCAAAACAACGGCAAAAAGGCGCCACTAGCAGCGCAGTGGGTTCGTCGGTGGCGGAACCGAAATGATGCATTTTACGGCGGCGATACAGCAGCGTACGTAATATGAGCGTCATCTTATTTATTACTATTTTCCTTCAAATTTCCCTCCTGTCCTCCCAGAACTGTTATGTAGTCCAATGTTAGTCTATCCTTTATCCCCTCCGCTGCAAGAGGCATCGGGCCTAATCGCGCTGGTTCCTATTGCCTCTCTATATCATTTGGCAGGCGGGTAAGAAGGCAAGCGCCGCTTAACTTTGTCGATTCCTGAGCTTTAAATGTTACAGTGGCAATATTTCTATTCCTTTATCATACTTCGTTGTAAGCCCGTTTCGTTGCTTTAGTGTTGAAGAAAGTAGGTTAAGCTGAGGCAGCGAGACAGAAAGAGAGAGAGAGAGAGTGAGAAGGTACGTTGCAAAATGGTTTCCCTTTGGTTACGATCGGCTGTTTACATGATTGANGCACTNNGCACGACANACTNGCACACGCTCCNNCCCACTAGAACGCGAGGCCAATC]
[+] EMBL BM583237 [ ccgGGACGAGCCGCGGAAAAGATTGCTGACCGTCGGGCAGGATCGTATCATCAAGATTTGGGACCTTTCCTCGATCTGGGGTTAGTAGTGGCGATTGGCGGGCGAAAACACGCGCGGCTCCGGTAACGTTTAACGAAGGACCACGTCGCGGAA AATTCAAAACAACGGCAAAAAGGCGCCACTAGCAGCGCAGTGGGTTCGTCGGTGGCGGAACCGAAATGATGCATTTTACGGCGGCGATACAGCAGCGTACGTAATATGAGCGTCAT TTATTT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6223#0 ------------------------------------------------------------
consensus_6223#1 TCCCCGAGGTTAACAGCGGCTGAAGAGCGAAGAGCGACCTCGCTGGCCACGTTCCACGAT 60
consensus_6223#0 ------------------------------------------------------------
consensus_6223#1 GCGAAGCACAGTATCGTCGGGATGGATTTGGACGAGCCGCGGAAAAGATTGCTGACCGTC 120
consensus_6223#0 ------------------------------------------------------------
consensus_6223#1 GGGCAGGACCGTATTATCAAGATTTGGGACCTCTCCTCGATCTGGGGTTAGTAGTGGCGA 180
consensus_6223#0 ------------------------------------------------------------
consensus_6223#1 TTGGCGGGCGAAAACACGCGCGGCTCCGGTAACGTCTAACGAAGGACCACGCCGCGGAAC 240
consensus_6223#0 -------------------CCGGCGCCACTAGCAGCGCAGTGGGTTCGTCGGTGGCGGAA 41
consensus_6223#1 AATTCAAAACAACGGCAAAAAGGCGCCACTAGCAGCGCAGTGGGTTCGTCGGTGGCGGAA 300
***************************************
consensus_6223#0 CCGAAATGATGCATTTTACGGCGGCGATACAGCAGCGTACGTAATATGAGCGTCAT-TTA 100
consensus_6223#1 CCGAAATGATGCATTTTACGGCGGCGATACAGCAGCGTACGTAATATGAGCGTCATCTTA 360
******************************************************** ***
consensus_6223#0 TTTATTACTATTTTCCTTCAAATTTCCCTCCTGTCCTCCCAGAACTGTTATGTAGTCCAA 160
consensus_6223#1 TTTATTACTATTTTCCTTCAAATTTCCCTCCTGTCCTCCCAGAACTGTTATGTAGTCCAA 420
************************************************************
consensus_6223#0 TGTTAGTCTATCCTTT-TCTCCTCCG-TGCAAG-GGCATCGG-CCTAATCGGTC--GTTC 214
consensus_6223#1 TGTTAGTCTATCCTTTATCCCCTCCGCTGCAAGAGGCATCGGGCCTAATCGCGCTGGTTC 480
**************** ** ****** ****** ******** ******** * ****
consensus_6223#0 CTATTGCCTTTAT---TCATTTGGAGGG--GGTAAGGGGAAGGGG-----TTAA-TTTGT 263
consensus_6223#1 CTATTGCCTCTCTATATCATTTGGCAGGCGGGTAAGAAGGCAAGCGCCGCTTAACTTTGT 540
********* * * ******** ** ****** * * **** *****
consensus_6223#0 CG--TTCTGAG-TTTAAATGTTACAGTGGCAATATTTCTATTCCTTTATCATACTTCGTT 320
consensus_6223#1 CGATTCCTGAGCTTTAAATGTTACAGTGGCAATATTTCTATTCCTTTATCATACTTCGTT 600
** * ***** ************************************************
consensus_6223#0 G--AACCCGTTTTGTTGCTTTA-TGTTGAAGAAAGTAGGTTAAGCTGAGGCAGCGAGACA 377
consensus_6223#1 GTAAGCCCGTTTCGTTGCTTTAGTGTTGAAGAAAGTAGGTTAAGCTGAGGCAGCGAGACA 660
* * ******* ********* *************************************
consensus_6223#0 GAAAGAGAGAGAGAGAGAGTGAGAAGTTACGTTTGCAAATGGTTTCCTTT--GTTACGAT 435
consensus_6223#1 GAAAGAGAGAGAGAGAGAGTGAGAAGGTACGTTGCAAAATGGTTTCCCTTTGGTTACGAT 720
************************** ****** *********** ** ********
consensus_6223#0 CGGTG--TTACAAGATTGAGATTGAGACAATGAAGGTTTAAAATCGAACGCGAGGCAATC 493
consensus_6223#1 CGGCTGTTTACATGATTGANGCACTNNGCACGA-----CANACTNGCACACGCTCCNNCC 775
*** ***** ****** * ** * * * * ** ** * *
consensus_6223#0 GAATAAGCAACTTGACGTTGACCAGGGCCTTTTTCTTCCTTCTATTCATTCCCTTTTTTC 553
consensus_6223#1 CACTAG--AACGCGAGGCCAATC------------------------------------- 796
* ** *** ** * * *
consensus_6223#0 GATAAATTATACAAAAAAAACAACAATATAAAGAAAATAAAACCCCCGGGGGCAATGGGG 613
consensus_6223#1 ------------------------------------------------------------
consensus_6223#0 GCAGTCCTGTTTAATAAGAAAGCGTGAACCGTGTAAACGACAAGCCATTAGGGACGCGAG 673
consensus_6223#1 ------------------------------------------------------------
consensus_6223#0 AGGTGGTACGGGAGGCGTTGCGCGTCTTTGCGACGGACCAAAAACCAACGAATCAAAACC 733
consensus_6223#1 ------------------------------------------------------------
consensus_6223#0 GCAGCTAGGGTGTTAACTGGTGGGGGGCTGGATTTCCTTCACCGCGGAAGGATGTACGAG 793
consensus_6223#1 ------------------------------------------------------------
consensus_6223#0 CGCCGATAGGTTAGGGGAATGTACGCGCGTGGGCAAATAATGTAAGAAAACAAAGCTCTA 853
consensus_6223#1 ------------------------------------------------------------
consensus_6223#0 GTGAAAAAAAAACAAAATTAAACATCGGTATTTGCAAAATTGGAAACGACAAACAACCAA 913
consensus_6223#1 ------------------------------------------------------------
consensus_6223#0 CATAACGATGCGACAG 929
consensus_6223#1 ----------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||