These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6233#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 950 fasta sequence [AGGCAGAATCGCCACGAGGTGAGTAGGAGCTGAAGAACCAAAAAACTGTTGCTTTTACGGAAGTTTTACAAAAATGTCCAAACAATTTGTTGGTTTCTCTGACGATGACATCTTCAAGATCACGCGACAAACAAGCAGCAAAGAAAAGGCAAAGGAACTGTCGCGACCGCATAGCAGACACCCCAAAGCACCGCCAGGCGCGGTGAAATTTGTTCCGCCGCCTACCATCGTAGATAATGGCAATCTTAGCACAGTCAGTTGTGTCGACTCCAGCATTTACCCACGAACACCCTATTCAACAAGCCGTCGCCTTTAAACCACTGCCTCAAATGATAAATGCTCCGGAGGATGAGTCAATCCTAGTGCTTCCAAATCAGCNCAGTAAAAAGTCGGTCATTCGAACCAACTGTTGCTAGCACTATGCTAGGGCGCCACCGGCATGCGGACCAATGTAAATGAGGTGCTAACTCCCTTCAAAGGTATGTCGCTCAAGGATTTTGGAACAGGAGCGAAAACTGATGGCAGAACAGAACAGACAGAAAGCGGGATATTGCTCCATAAAGGCAATAGAGGCAACATGCTCAGGAAAGAACAGCGACGCCGGAGGCGGAAGCAAANAATTCCAAGGACGACTCACANATCAGAGGNTAACCGGGCTGGAACTCCGAGCTGGGACATCGGGATGGTTGGGCGGAATATTTNCACGGGGAAAACCACACATTGNAATTGCCGGGAAAGGCCCTAACAACCNTTTGTTAGCACAAAACCGGGTTTTNGACGGCAAGCAACGCATNTCANTCCTNTCNCCAAGCTCGNNNTTGGGAACAAGACATCCGTAAGATTGACNCTGGGANAAAGGCCTTAACAGGAGGNTGGGGAACGCTTAACCACTCCAAAAGGGCGCCCCTGAGAGACGACTAGGNACACGGCAGANAATCNGGGTTACCCGG] [+] EMBL BX467528 [AGGCAGAATCGCCACGAGGTGAGTAGGAGCTGAAGAACCAAAAAACTGTTGCTTTTACGGAAGTTTTACAAAAATGTCCAAACAATTTGTTGGTTTCTCTGACGATGACATCTTCAAGATCACGCGACAAACAAGCAGCAAAGAAAAGGCAAAGGAACTGTCGCGACCGCATAGCAGACACCCCAAAGCACCGCCAGGCGCGGTGAAATTTGTTCCGCCGCCTACCATCGTAGATAATGGCAATCTTAGCACAGTCAGTTGTGTCGACTCCAGCATTTACCCACGAACACCCTATTCAACAAGCCGTCGCCTTTAAACCACTGCCTCAAATGATAAATGCTCCGGAGGATGAGTCAATCCTAGTGCTTCCAAATCAGCNCAGTAAAAAGTCGGTCATTCGAACCAACTGTTGCTAGCACTATGCTAGGGCGCCACCGGCATGCGGACCAATGTAAATGAGGTGCTAACTCCCTTCAAAGGTATGTCGCTCAAGGATTTTGGAACAGGAGCGAAAACTGATGGCAGAACAGAACAGACAGAAAGCGGGATATTGCTCCATAAAGGCAATAGAGGCAACATGCTCAGGAAAGAACAGCGACGCCGGAGGCGGAAGCAAANAATTCCAAGGACGACTCACANATCAGAGGNTAACCGGGCTGGAACTCCGAGCTGGGACATCGGGATGGTTGGGCGGAATATTTNCACGGGGAAAACCACACATTGNAATTGCCGGGAAAGGCCCTAACAACCNTTTGTTAGCACAAAACCGGGTTTTNGACGGCAAGCAACGCATNTCANTCCTNTCNCCAAGCTCGNNNTTGGGAACAAGACATCCGTAAGATTGACNCTGGGANAAAGGCCTTAACAGGAGGNTGGGGAACGCTTAACCACTCCAAAAGGGCGCCCCTGAGAGACGACTAGGNACACGGCAGANAATCNGGGTTACCCGG] consensusID : consensus_6233#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 817 fasta sequence [CCGCAAACTTCGAGTAGGAGCCTGAAGAACAAAAAAACTGTTGCTTTTACGGAAGTTTTACAAAAATGTCCAAACAA-TTTGTTGGTTTCTCTGACGATGACATCTTCAAGATCACGCGACAAACAAGCAGCAAAGAAAAGGCAAAGGAACTGTCGCGACCGCATAGCAGACACCCCAAAGCACCGCCAGGCGCGGTGAAATTTGTTCCGCCGCCTACCATCGTAGATAATGGCAATCTTAGCACAGTCAGTTGTGTCGACTCCAGCATTTACCCACAGCACCCTATTCAACAAGCCGTCGCCTTTAAACCACTGCCTCAAATGATAAATGCTCCGGAGGATGAGTCAATCCTAGTGCTTCCAA-ATCAGCCAGTAAAAAGTCGGTCATTCGAACCAACTGTTGCTAGCACTATGCTAGGCGCCACCGGCATGCGGACCAATGTAAATGAGGTGCTAACTCCCTTCAAAGGTATGTCGCTCAAGGATTTTGAACAGCAGCGAAAACTGATGGA-AGAACAGAACAGACAGAAGCGGGATATTCTCCATAAAGCAATAGAGCAACATGCTC-AGAAAACAGCA-GCGGA-GGCGAACAAAATTCAGGAGATAAAATCAGAGCTAACCCGGCTGGACTCCGAGCTGGCATCGGATGTGGCGATTTTACGGAAACAAATTGATGCGGCAAGCCTACACTTTTCAAACGTTGAGAAAAATTATCTCACTATAGAAAATCTATTTCTGAAAGCTAAGGTGGAGCTTCATCAAGCGCTGGAGAAGAAAGAATGCTTACCGAACATTTGTGTGCAATCATTTNCCACAAT] [+] EMBL BM641192 [CCGCAAACTTCGAGTAGGAGCCTGAAGAACAAAAAAACTGTTGCTTTTACGGAAGTTTTACAAAAATGTCCAAACAA TTTGTTGGTTTCTCTGACGATGACATCTTCAAGATCACGCGACAAACAAGCAGCAAAGAAAAGGCAAAGGAACTGTCGCGACCGCATAGCAGACACCCCAAAGCACCGCCAGGCGCGGTGAAATTTGTTCCGCCGCCTACCATCGTAGATAATGGCAATCTTAGCACAGTCAGTTGTGTCGACTCCAGCATTTACCCACAACACCCTATTCAACAAGCCGTCGCCTTTAAACCACTGCCTCAAATGATAAATGCTCCGGAGGATGAGTCAATCCTAGTGCTTCCAA ATCAGCCAGTAAAAAGTCGGTCATTCGAACCAACTGTTGCTAGCACTATGCTAGGCGCCACCGGCATGCGGACCAATGTAAATGAGGTGCTAACTCCCTTCAAAGGTATGTCGCTCAAGGATTTTGAACAGCAGCGAAAACTGATGGA AGAACAGAACAGACAGAAGCGGGATATTCTCCATAAAGCAATAGAGCAACATGCTC AGAAAACAGCA GCGGA GGCGAACAAAATTCAGGAGATAAAATCAGAGCTAACCCGGCTGGACTCCGAGCTGGCATCGGATGTGGCGATTTTACGGAAACAAATTGATGCGGCAAGCCTACACTTTTCAAACGTTGAG ] [+] EMBL AL694158 [ cccgaggttAGTAGGAG CTGAAGAACAAAAAAACTGTTGCTTTTACGGAAGTTTTACAAAAATGTCCAAACAAGTTTGTTGGTTTCTCTGACGATGACATCTTCAAGATCACGCGACAAACAAGCAGCAAAGAAAAGGCAAAGGAACTGTCGCGACCGCATAGCAGACACCCCAAAGCACCGCCAGGCGCGGTGAAATTTGTTCCGCCG CTACCATCGTAGATAATGGCAATCTTAGCACAGTCAGTTGTGTCGACTCCAGCATTTACCCACA AACCCTATTCAACAAGCCGTCG CTTTAAACCACTGCCTCAAATGATAAATGCTCCGGAGGATGAGTCAATCCTAGTGCTTCCAANATCAGCCAGTAAAAAGTCGGTCATTCGAACCAACTGTTGCTAGCACTATGCTAGGCGCCACCGGCATGCGGACCAATGTAAATGAGGTGCTAACTCCCTTCAAAGGTATGTCGCTCAAGGATTTTGAACAGCAGCGAAAACTGATGGANAGAACAGAACAGACAGAAGCGGGATATTCTCCATAAAGCAATAGAGCAACATGCTC AGAAAACAGCAGGCGGACGGCGA ] [+] EMBL BX622410 [ AACTGTTGCTTTTACGGAAGTTTTACAAAAATGTCCAAACAA TTTGTTGGTTTCTCTGACGATGACATCTTCAAGATCACGCGACAAACAAGCAGCAAAGAAAAGGCAAAGGAACTGTCGCGACCGCATAGCAGACACCCCAAAGCACCGCCAGGCGCGGTGAAATTTGTTCCGCCGCCTACCATCGTAGATAATGGCAATCTTAGCACAGTCAGTTGTGTCGACTCCAGCATTTACCCACAGCACCCTATTCAACAAGCCGTCGCCTTTAAACCACTGCCTCAAATGATAAATGCTCCTGAGGATGAGTCAATCTTAGTGCTTCCAA ATCAGCCAGTAAAAAGTCGGTCATTCGAACCAACTGTTGCTAGCACTATGCTAGGCGCCACCGGCATGCGGACCAATGTAAATGAGGTACTAACTCCCTTCAAAGGTATGTCGCTCAAGGATTTTGAACAGCAGCGAAAACTGATGGA AGAACAGAACAGACAGAAGCGGGATATTCTCCATAAAGCAATAGAGCAACATGCTCAAAAAAACAGCA GCGGA GGCGAACAAAATTCAGGAGATAAAATCAGAGCTAACCCGGCTGGACTCCGAGCTGGCATCGGATGTGGCGATTTTACGGAAACAAATTGATGCGGCAAGCCTACACTTTTCAAACGTTGAGAAAAATTATCTCACTATAGAAAATCTATTTCTGAAAGCTAAGGTGGAGCTTCATCAAGCGCTGGAGAAGAAAGAATGCTTACCGAACATTTGTGTGCAATCATTTNCCACAAT] [+] EMBL BX625397 [ AACTGTTGCTTTTACGGAAGTTTTACAAAAATGTCCAAACAA TTTGTTGGTTTCTCTGACGATGACATCTTCAAGATCACGCGACAAACAAGCAGCAAAGAAAAGGCAAAGGAACTGTCGCGACCGCATAGCAGACACCCCAAAGCACCGCCAGGCGCGGTGAAATTTGTTCCGCCGCCTACCATCGTAGATAATGGCAATCTTAGCACAGTCAGTTGTGTCGACTCCAGCATTTACCCACAGCACCCTATTCAACAAGCCGTCGCCTTTAAACCACTGCCTCAAATGATAAATGCTCCTGAGGATGAGTCAATCTTAGTGCTTCCAA ATCANCCAGTAAAAAGNCGGTCATTCNAACCAACTGTTGCTAGCACTATGCTAGGCGCCACCGGCATGCGGACCAATGTAAATGAGGTACTAACTCCCTTCAAAGGTATGTCGCTCAAGGATTTTGAACAGCAGCGAAAACTGATGGA AGAACAGAACAGACAGAAGCGGGATATTCTCCATAAAGCAATAGAGCAACATGCTC AAAAAACAGCA GCGGA GGCGAACAAAATTCANGAGATAAAATCAGAGCTAACCCGGCTGGACTCCGAGCTGGCATCGGATGTGGCGATTTTACGGAAACAAATTGATGCGGCAAGNCTACAC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6233#0 AGGCAGAATCGCCACGAGGT--GAGTAGGAGC-TGAAGAACCAAAAAACTGTTGCTTTTA 57 consensus_6233#1 -----------CCGCAAACTTCGAGTAGGAGCCTGAAGAACAAAAAAACTGTTGCTTTTA 49 ** * * * ********** ******** ****************** consensus_6233#0 CGGAAGTTTTACAAAAATGTCCAAACAATTTGTTGGTTTCTCTGACGATGACATCTTCAA 117 consensus_6233#1 CGGAAGTTTTACAAAAATGTCCAAACAATTTGTTGGTTTCTCTGACGATGACATCTTCAA 109 ************************************************************ consensus_6233#0 GATCACGCGACAAACAAGCAGCAAAGAAAAGGCAAAGGAACTGTCGCGACCGCATAGCAG 177 consensus_6233#1 GATCACGCGACAAACAAGCAGCAAAGAAAAGGCAAAGGAACTGTCGCGACCGCATAGCAG 169 ************************************************************ consensus_6233#0 ACACCCCAAAGCACCGCCAGGCGCGGTGAAATTTGTTCCGCCGCCTACCATCGTAGATAA 237 consensus_6233#1 ACACCCCAAAGCACCGCCAGGCGCGGTGAAATTTGTTCCGCCGCCTACCATCGTAGATAA 229 ************************************************************ consensus_6233#0 TGGCAATCTTAGCACAGTCAGTTGTGTCGACTCCAGCATTTACCCACGAACACCCTATTC 297 consensus_6233#1 TGGCAATCTTAGCACAGTCAGTTGTGTCGACTCCAGCATTTACCCAC-AGCACCCTATTC 288 *********************************************** * ********** consensus_6233#0 AACAAGCCGTCGCCTTTAAACCACTGCCTCAAATGATAAATGCTCCGGAGGATGAGTCAA 357 consensus_6233#1 AACAAGCCGTCGCCTTTAAACCACTGCCTCAAATGATAAATGCTCCGGAGGATGAGTCAA 348 ************************************************************ consensus_6233#0 TCCTAGTGCTTCCAAATCAGCNCAGTAAAAAGTCGGTCATTCGAACCAACTGTTGCTAGC 417 consensus_6233#1 TCCTAGTGCTTCCAAATCAGCC-AGTAAAAAGTCGGTCATTCGAACCAACTGTTGCTAGC 407 ********************* ************************************* consensus_6233#0 ACTATGCTAGGGCGCCACCGGCATGCGGACCAATGTAAATGAGGTGCTAACTCCCTTCAA 477 consensus_6233#1 ACTATGCTAGG-CGCCACCGGCATGCGGACCAATGTAAATGAGGTGCTAACTCCCTTCAA 466 *********** ************************************************ consensus_6233#0 AGGTATGTCGCTCAAGGATTTTGGAACAGGAGCGAAAACTGATGGCAGAACAGAACAGAC 537 consensus_6233#1 AGGTATGTCGCTCAAGGATTTTG-AACAGCAGCGAAAACTGATGGAAGAACAGAACAGAC 525 *********************** ***** *************** ************** consensus_6233#0 AGAAAGCGGGATATTGCTCCATAAAGGCAATAGAGGCAACATGCTCAGGAAAGAACAGCG 597 consensus_6233#1 AGAA-GCGGGATATT-CTCCATAAAG-CAATAGAG-CAACATGCTCAGAAAACAGCAGCG 581 **** ********** ********** ******** ************ *** * ***** consensus_6233#0 ACGCCGGAGGCGGAAGCAAANAATTCCAAGGACGACTCACANATCAGAGGNTAACCGGGC 657 consensus_6233#1 ------GAGGCGA----ACAAAATTCAGGAGATA------AAATCAGAG-CTAACCCGGC 624 ****** * * ***** ** * ******* ***** *** consensus_6233#0 TGGAACTCCGAGCTGGGAC--ATCGGGATGGTTGGGCGGAA-TATTTNCACGGGGAAAAC 714 consensus_6233#1 TGGA-CTCCGAGCTGGCATCGGATGTGGCGATTTTACGGAAACAAATTGATGCGGCAAGC 683 **** *********** * * * * ** ***** * * * * ** ** * consensus_6233#0 C-ACACATTGNAATTGCCGGGAAAGGCCCTAACAACCNTTTGTTAGCACAAAACCGGGTT 773 consensus_6233#1 CTACACTTTTCAAACGTTGAGAAA---------AATTATCTCACTATAGAAAATCTATTT 734 * **** ** ** * * **** ** * * * **** * ** consensus_6233#0 TTNGACGGCAAGCAACGCATNTCANTCCTNTCNCCAAGCTCGNNNTTGGGAACAAGACAT 833 consensus_6233#1 CTGAAAGCTAAG--------GTGGAGC--TTCATCAAGCGCTGGAGAAGAAAGAATGCTT 784 * * * *** * * ** ***** * * ** ** * * consensus_6233#0 CCGTAAGATTGACNCTGGGANAAAGGCCTTAACAGGAGGNTGGGGAACGCTTAACCACTC 893 consensus_6233#1 ACCGAACATTTGTGTGCAATCATTTNCCACAAT--------------------------- 817 * ** *** * ** ** consensus_6233#0 CAAAAGGGCGCCCCTGAGAGACGACTAGGNACACGGCAGANAATCNGGGTTACCCGG 950 consensus_6233#1 --------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||