These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6237#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1127 fasta sequence [ATCCCCCNAGGTTAATATGACAAGCTGACCAAAGNCCTGGACATGATGGGTAGCGGTGGATCGAAAGGGAAAAGGCAGCGGGCGCGCGAACAAAGTGCCGACTCGTCCGGATCGGATAGAAGAGGCACGCGCCGACGGCAGGATGATCGGTACGGCAAGCGGGAGGAACATGGTACGGCGTGATGATCGANATAGAGGGAGAACAAATGCTAGCAAAGAGCGTTCACGGGATGTGAGGAAAAGCCGAAGAGATTCTTCAGAGGAAAGTGTAAAAGATCGAAAGCGAGATAGAAAACAGACTCATTCAGAGAGAGATAGAAGTAGGGATAGGCAAAGAAACAGATCACCTGTTCGTTCCGGCCACCGTTCTCCCGTGCGTAAAGCGGCCCCATCGAAAGACAAACACAGTCGTGGTCGTTCCCGGTCAAGATCTCCCGAAAGGAAGCAGTCGCACAAGGAGACGAAACGTCGGTCACGATCGCGGAGCAACCGGCGACGTAGCCGAAGTCCCGCACCAGAACACAGCAAACCGAAAGCGAAACCCCGCAGAGCACCATCCAGCTCGTCATCCTCATCGTCCGGATCGGATTCGGACGCTTCGAATCAACCAGCCCGAACACGCCCAGCACCCGACGACTCGGACGATGAACGGCGCGTCCGGAAGGTGCGAAACTTCGGACTCGTCACAGCGTCCGGTGAAAAGTTGGACACCTCCACCCGGTCCGAGGTACGGCTGTACAAGCGCGAAGAGATCAAAGCCGAACAGTCAAAGCAACGGCCAACGTGGAGCAAACCGCAGGAAAAGAAGCGACCGCTGTCCGAGCAGGAGCTGGAAGAGAAACGGCTGGCCATGATGAGCAATGCCCAGTGGCGGGATAAGGAACGCGAATCGAACGTGAAGCGGTACGAATCGGAAGATCACCGGGAGGATGCGAAGGAAAGCCGAGAGTTCGATAAGGAGTTTCTCACGAAGCAGCTGAAACGGGCGGCAGCGAGCGAAACGGTCGAATCGCGCATTCGTTCGAATCGGAACAATATTCAGCGATCGAACGGTGCCATGGATAGGAATTTCGTGAAGCGATGAACGATTTTTAGGACTGATTGGTTGAATACTAATCTTGTGCGGA] [+] EMBL AL933506 [ATCCCCCNAGGTTAATATGACAAGCTGACCAAAGNCCTGGACATGATGGGTAGCGGTGGATCGAAAGGGAAAAGGCAGCGGGCGCGCGAACAAAGTGCCGACTCGTCCGGATCGGATAGAAGAGGCACGCGCCGACGGCAGGATGATCGGTACGGCAAGCGGGAGGAACATGGTACGGCGTGATGATCGANATAGAGGGAGAACAAATGCTAGCAAAGAGCGTTCACGGGATGTGAGGAAAAGCCGAAGAGATTCTTCAGAGGAAAGTGTAAAAGATCGAAAGCGAGATAGAAAACAGACTCATTCAGAGAGAGATAGAAGTAGGGATAGGCAAAGAAACAGATCACCTGTTCGTTCCGGCCACCGTTCTCCCGTGCGTAAAGCGGCCCCATCGAAAGACAAACACAGTCGTGGTCGTTCCCGGTCAAGATCTCCCGAAAGGAAGCAGTCGCACAAGGAGACGAAAC ] [+] EMBL BM652722 [ ATAGGCAAAGAAACAGATCACCTGTTCGTTCGAGCCATCGGTCTCCCGTGCGTAAAGCGGCCCCATCGAAAGAGAAACACAGGGGGGGTCGTTCCCGGTCAAGATCTCCCGAAAGGAAGCAGTCGCACAAGGAGACGAAACGTCGGTCACGATCGCGGAGCAACCGGCGACGTAGCCGAAGTCCCGCACCAGAACACAGCAAACCGAAAGCGAAACCCCGCAGAGCACCATCCAGCTCGTCATCCTCATCGTCCGGATCGGATTCGGACGCTTCGAATCAACCAGCCCGAACACGCCCAGCACCCGACGACTCGGACGATGAACGGCGCGTCCGGAAGGTGCGAAACTTCGGACTCGTCACAGCGTCCGGTGAAAAGTTGGACACCTCCACCCGGTCCGAGGTACGGCTGTACAAGCGCGAAGAGATCAAAGCCGAACAGTCAAAGCAA ] [+] EMBL BX608908 [ acCAACCAGCCCAAACACGCCCAGCACCCGACGACTCGGACGATGAACGGCGCGTCCGGAAGGTGCGAAACTTTGGACTCGTCACAGCGTCCGGTGAAAAGTTGGCCACCACCACCCGGTCCGAGGTACGGCTGTACAAGCGCGAAGAGATCAAAGCCGAACAGTCAAAGCAACGGCCAACGTGGAGCAAACCGCAGGAAAAGAAGCGACCGCTGTCCGAGCAGGAGCTGGAAGAGAAACGGCTGGCCATGATGAGCAATGCCCAGTGGCGGGATAAGGAACGCGAATCGAACGTGAAGCGGTACGAATCGGAAGATCACCGGGAGGATGCGAAGGAAAGCCGAGAGTTCGATAAGGAGTTTCTCACGAAGCAGCTGAAACGGGCGGCAGCGAGCGAAACGGTCGAATCGCGCATTCGTTCGAATCGGAACAATATTCAGCGATCGAACGGTGCCATGGATAGGAATTTCGTGAAGCGATGAACGATTTTTAGGACTGATTGGTTGAATACTAATCTTGTGCG ] [+] EMBL BX622748 [ GGAGTTTCTCACGAAGCAGCTGAAACGGGCGGCAGCGAGCGAAACGGTCGAATCGCGCATTCGTTCGAATCGGAACAATATTCAGCGATCGAACGGTGCCATGGATAGGAATTTCGTGAAGCGATGAACGATTTTTAGGACTGATTGGTTGAATACTAATCTTGTGCGGA] consensusID : consensus_6237#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 504 fasta sequence [GAATCGCCCCGAGGNAAAAGAGCACAAGAAGAAGAGCAGAAAAGCAAACGCCGAAGCGATAGCAGTGCGTCCGGGAGCGACAGTGACGGAAGCGCGGATTTAGACAAGCTGCTGGCGGAAAAGTACAAACAAGGTAGCCGGAGAAGTGGCAGCGAAGGCGTGAGCATTGATAAGCTGCTAACCATGAAGTATGACAAGCTGACCAAAGAGCTGGACATGATGNGGTAGCGGTGGCATCGCAACAGGGAACCAGGCAGCGNGGCGCGCGAACAAAGTGTCGACTCGNTCCGGATCGGACTAGAAGAGGCACGCGCCGACGGCAGGATGATCGGTACGGCAGGCTGGAGGAACAGGGCTCGGCGTGACTGATCGAGATGCGACGCGGCACGAGCAAACTGCCTAGCCACACACGCACGCGTGTCACGGCGCACTTGCTGCCGGAACACACGCCCGACAAGCAGGACTTCGTTCACGCACGGAACACGCTGTAACAACGACTCGCAC] [+] EMBL AL932878 [GAATCGCCCCGAGGNAAAAGAGCACAAGAAGAAGAGCAGAAAAGCAAACGCCGAAGCGATAGCAGTGCGTCCGGGAGCGACAGTGACGGAAGCGCGGATTTAGACAAGCTGCTGGCGGAAAAGTACAAACAAGGTAGCCGGAGAAGTGGCAGCGAAGGCGTGAGCATTGATAAGCTGCTAACCATGAAGTATGACAAGCTGACCAAAGAGCTGGACATGATGNGGTAGCGGTGGCATCGCAACAGGGAACCAGGCAGCGNGGCGCGCGAACAAAGTGTCGACTCGNTCCGGATCGGACTAGAAGAGGCACGCGCCGACGGCAGGATGATCGGTACGGCAGGCTGGAGGAACAGGGCTCGGCGTGACTGATCGAGATGCGACGCGGCACGAGCAAACTGCCTAGCCACACACGCACGCGTGTCACGGCGCACTTGCTGCCGGAACACACGCCCGACAAGCAGGACTTCGTTCACGCACGGAACACGCTGTAACAACGACTCGCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6237#0 ATCCCCCNAGGTTAATATGACAAGCTGACCAAAGNCCTGGACATGATGGGTAGCGGTGGA 60 consensus_6237#1 ------------------------------------------------------------ consensus_6237#0 TCGAAAGGGAAAAGGCAGCGGGCGCGCGAACAAAGTGCCGACTCGTCCGGATCGGATAGA 120 consensus_6237#1 ------------------------------------------------------------ consensus_6237#0 AGAGGCACGCGCCGACGGCAGGATGATCGGTACGGCAAGCGGGAGGAACATGGTACGGCG 180 consensus_6237#1 ------------------------------------------------------------ consensus_6237#0 TGATGATCGANATAGAGGGAGAACAAATGCTAGCAAAGAGCGTTCACGGGATGTGAGGAA 240 consensus_6237#1 ------------------------------------------------------------ consensus_6237#0 AAGCCGAAGAGATTCTTCAGAGGAAAGTGTAAAAGATCGAAAGCGAGATAGAAAACAGAC 300 consensus_6237#1 ------------------------------------------------------------ consensus_6237#0 TCATTCAGAGAGAGATAGAAGTAGGGATAGGCAAAGAAACAGATCACCTGTTCGTTCCGG 360 consensus_6237#1 ------------------------------------------------------------ consensus_6237#0 CCACCGTTCTCCCGTGCGTAAAGCGGCCCCATCGAAAGACAAACACAGTCGTGGTCGTTC 420 consensus_6237#1 ------------------------------------------------------------ consensus_6237#0 CCGGTCAAGATCTCCCGAAAGGAAGCAGTCGCACAAGGAGACGAAACGTCGGTCACGATC 480 consensus_6237#1 ------------------------------------------------------------ consensus_6237#0 GCGGAGCAACCGGCGACGTAGCCGAAGTCCCGCACCAGAACACAGCAAACCGAAAGCGAA 540 consensus_6237#1 ------------------------------------------------------------ consensus_6237#0 ACCCCGCAGAGCACCATCCAGCTCGTCATCCTCATCGTCCGGATCGGATTCGGACGCTTC 600 consensus_6237#1 ----------------------------------------GAATCG--CCCCGAGGNAAA 18 * **** * ** * consensus_6237#0 GAATCAACCAGCCCGAACACGCCCAGCACCCGACGACTCGGACGATGAACGGCGCGTCCG 660 consensus_6237#1 AGAGCA--CAAGAAGAAGA-GCAGAAAAGCAAACG-CCGAAGCGAT-AGCAGTGCGTCCG 73 * ** ** *** * ** * * * *** * **** * * * ******* consensus_6237#0 GAAG-----GTG-CGAAACTTCGGACTCGTCACAGCGTCCGGTGAAAAGTTGGACACCTC 714 consensus_6237#1 GGAGCGACAGTGACGGAAGCGCGGATTTAGACAAGCTGCTGGCGGAAAAGTACAAACA-- 131 * ** *** ** ** **** * *** * ** * *** * * ** consensus_6237#0 CACCCGGTCCGAGGTACGGCTGTACAAGCGCGAAGAGATCAAAGCCGAACAGTCAAAGCA 774 consensus_6237#1 -AGGTAGCCGGAGAAGTGGCAGCGAAGGCGTGAGCATTGATAAGCTGCTAACCATGAAGT 190 * * * *** *** * * *** ** * **** * * * consensus_6237#0 ACGGCCAACGTGGAGCAAACCGCAGGAAAAGAAGCGACCGCTGTCCGAGCAGGAGCTGGA 834 consensus_6237#1 ATGAC--AAGCTGACCAAAGAGCTGGACATGATGNGGTAGCGGTG-GCATCGCAACAGGG 247 * * * * * ** **** ** *** * ** * * ** ** * * * * ** consensus_6237#0 AGAGAAACGGCTGGCCATGATGAGCAATGCCCAGTGGCGGGATAAGGAACGCGAATCGAA 894 consensus_6237#1 AACCAGGCAGCGNGGCGCG-CGAACAA-----AGTGTCG----ACTCGNTCCGGATCGGA 297 * * * ** * * * ** *** **** ** * ** **** * consensus_6237#0 CGTGAAGCGGTACGAATCGGAAGATCACCGGGAGGATGCGAAGGAAAGCCGAGAGTTCGA 954 consensus_6237#1 CTAGAAGAGGCACGCGCCGACGG-----CAGGATGATCGGTACGGCAGGCTGGAG----G 348 * **** ** *** ** * * *** *** * * * ** * *** consensus_6237#0 TAAGGAGTTTCTCACGAAGCAGCTGAAACGGGCGGCAGCGAGCG-AAACGGTCGAATCGC 1013 consensus_6237#1 AACAGGGCTCGGCGTGAC-TGATCGAGATGCGACGCGGCACGAGCAAACTGCCTAGCCAC 407 * * * * * ** ** * * * ** ** * * **** * * * * * consensus_6237#0 GCATTCGTTCGAATCGGAACAATATTCAGCGATCGAACG---GTGCCATGGATAGGAATT 1070 consensus_6237#1 ACACGCACGCGTGTCACGGCG-CACTTGCTGCCGGAACACACGCCCGACAAGCAGGACTT 466 ** * ** ** * * * * **** * * * **** ** consensus_6237#0 TCGTGAAGCGATGAACGATTTTTAGGACTGATTGGTTGAATACTAATCTTGTGCGGA 1127 consensus_6237#1 CGTTCACGCACGGAACACGCTGTAACAACGACTCGCAC------------------- 504 * * ** **** * ** * ** * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||