These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6242#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 812 fasta sequence [CCCCGAGGTTTTTTTCACCATCAAACCGAAGCTCGTGTACGTCACCAATGATGGGCGGTACGGTACAGATGCACTGTGATGCACGGGATCGCGACGGTTATCACATTCCGCAGATAACGTGGATAAAGAAAGATGGTAGCCTTCTGCCGTAC-GGTCGATTCTCCGTGAACGGAGGTAACATAACGATCGAGGACATCGTTGAGTCCGATCGGGGAATCTACGGCTGTCAGGCGACGAACGAGGCGG-CA-CGTGACGGCCGATGCAGAGATTATGATTGAAAACGTGTCACCGCGGGCACCGTACAATCTGACCGGCAACAGTACCGACACCTCGATCACGATCCGCTGGGCGCCGGGCTATATTCGCCAGTACCTGGAGTACATCATCTGGTACCGGTTAGCGGAAGCGCCCGAGTGGCCGAACACTCAAGGTAAATGATAAGCATTGTCCTCGAGGCCAACGATCAACAACTTGCAGCCAGCGCGGGAGTACGAGTTCATGGTGCTATGTCAGGACAACTACGGTGATGGACACTGTTTAGCAAAGCGTTCCGTTACTTTA-CAAACCGACTGAGTTTGAGCAACCGGAAAATGGACTGCAAGATGCACTGCTCCAGTTCAGCCAGATCGGATCGCCGAGAAACTTTTACGTGCGCAAAGAGCAGGACAACTTTGTGGCCCGCTGGGAACCGCCGGAGCTCGGGCTGGATCAGCTTCGCTTCTACATTCTGCGCTGGTGGATCGAGCCACAGCACAAACTGCACGGTAGTGCAGAAACATCCGAGACGCATTATATACTTGAGCAGCTCGATG] [+] EMBL AL694196 [CCCCGAGGTTTTTTTCACCATCAAACCGAAGCTCGTGTACGTCACCAATGATGGGCGGTACGGTACAGATGCACTGTGATGCACGGGATCGCGACGGTTATCACATTCCGCAGATAACGTGGATAAAGAAAGATGGTAGCCTTCTGCCGTAC GGTCGATTCTCCGTGAACGGAGGTAACATAACGATCGAGGACATCGTTGAGTCCGATCGGGGAATCTACGGCTGTCAGGCGACGAACGAGGCGG CA CGTGACGGCCGATGCAGAGATTATGATTGAAAACGTGTCACCGCGGGCACCGTACAATCTGACCGGCAACAGTACCGACACCTCGATCACGATCCGCTGGGCGCCGGGCTATATTCGCCAGTACCTGGAGTACATCATCTGGTACCGGTTAGCGGAAGCGCCCGAGTGGCCGAACACTCAAGGTAAATGATAAGCATTGTCCTCGAGGCCAACGATCAACAACTTGCAGCCAGCGCGGGAGTACGAGTTCATGGTGCTATGTCAGGACAACTACGGTGATGGACACTGTTTAGCAAAGCGTTCCGTTACTTTA CAAACCGACTGAGTTTG ] [+] EMBL BM640526 [ ccgcccacgCGTCCGGGTCGATTCTCCGTGAACGGAGGCAACATTACGATCGAGGACATCGTTGAGTCCGATCGGGGAATCTACGGCTGTCAGGCGACGAACGAGGCGGCCACCGTGACGGCCGATGCAGAGATTATGATTGAAAACGTGTCACCGCGGGCACCGTACAATCTGACCGGCAACAGTACGGACACCTCGATCACGATCCGTTGGGCGCCGGGCTATATTCGCCAGTATCTGGAGTACATCATCTGGTACCGGTTAGCGGAAGCGCCCGAGTGG CGAACTCTCAAAGTTAATGATAAGCA TGTCCTGGAGG CAACGATCACCAACTTGCAGCCAGCGCGGGAGTACGAGTTCATGGTGCTATGTCAGGACAACTACGGTGATGGA A TGTTTAGCAAAGCGTTCCGTTACTTTACCAAACCGACTGAGTTTGAGCAACCGGAAAATGGACTGCAAGATGCACTGCTCCAGTTCAGCCAGATCGGATCGCCGAGAAACTTTTACGTGCGCAAAGAGCAGGACAACTTTGTGGCCCGCTGGGAACCGCCGGAGCTCGGGCTGGATCAGCTTCGCTTCTACATTCTGCGCTGGTGGATCGAGCCACAGCACAAACTGCACGGTAGTGCAGAAACATCCGAGACGCATTATATACTTGAGCAGCTCGATG] consensusID : consensus_6242#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 802 fasta sequence [CCGAGACGCATTATATACTTGAGCAGCTTTATGAAGATGAGATGTATACGATCCAGGTGTTTGCCCTTTCGACCACCAACTACACCAGTGGCAGCAATTAGTACGAGCTCTACGTCTACCCTTACCGGCGTGTCAAGGTGATGACGGTTAGTGGCGTGCTGATACTGCTGTTCTGTCTCGCCGTCATCAGCACGTTGCTCTACATGAAGCGGAAACGAATTCGGCAGCTGCGTGAAGCGGAAAATATGAAAATATAAGCCATAGAAACGACCCAAACCGTTACATACATCCGTTGAAAAGAACAAAAACACTTACGTGTCAACTCTTTCACACACACACATACACACACACAGACATCCCCACCATACAGCCGCATGTTAAGCAATGTCGTCCAGGGATTCGCCATGCTCAGATACGTCTCCATGACCATGTGACCGTTGTAGTCCTTTTTTCGATACTGACCTGCCGAAAGTTCCAGCTGCCCCGTTTCGGAAGTAGTGTGTAGTGTTCGTTTGTAGTACATATTGTCGTTTTAGCATAGCGGAATATATTATGATAGGAAAATACGAAACAAAACAGTATGAAGCACCAGAAGAGCATATATTAATAAAAGTGTTAATCGTTGAACGTTGAGAAACTGT-TGCTGTCAGCAGAAAACTAAGTTGATGCATTGGTTGCAAAGTAGTTGAAATCATACTC-AAAAAAAAAGAGGAGACAGGTACTATTGGAAAGCAGTAGGACGGTTTTGTTTATCTTTAGTGCGAAACAATGAGATCTTGTCATTAACTAATAATAAACGAAT] [+] EMBL BX608422 [CCGAGACGCATTATATACTTGAGCAGCTTTATGAAGATGAGATGTATACGATCCAGGTGTTTGCCCTTTCGACCACCAACTACACCAGTGGCAGCAATTAGTACGAGCTCTACGTCTACCCTTACCGGCGTGTCAAGGTGATGACGGTTAGTGGCGTGCTGATACTGCTGTTCTGTCTCGCCGTCATCAGCACGTTGCTCTACATGAAGCGGAAACGAATTCGGCAGCTGCGTGAAGCGGAAAATATGAAAATATAAGCCATAGAAACGACCCAAACCGTTACATACATCCGTTGAAAAGAACAAAAACACTTACGTGTCAACTCTTTCACACACACACATACACACACACAGACATCCCCACCATACAGCCGCATGTTAAGCAATGTCGTCCAGGGATTCGCCATGCTCAGATACGTCTCCATGACCATGTGACCGTTGTAGTCCTTTTTTCGATACTGACCTGCCGAAAGTTCCAGCTGCCCCGTTTCGGAAGTAGTGTGTAGTGTTCGTTTGTAGTACATATTGTCGTTTTAGCATAGCGGAATATATTATGATAGGAAAATACGAAACAAAACAGTATGAAGCACCAGAAGAGCATATATTAATAAAAGTGTTAATCGTTGAACGTTGAGAAACTGT TGCTGTCAGCAGAAAACTAAGTTGATGCATTGGTTGCAAAGTAGTTGAAATCATACTC AAAAAAAAAGAGGAGACAGGTACTATTGGAAAGCAGTAGGACGGTTTTGTTTATCTTTAGTGCGAAACAATGAGATCTTGTCATTAACTAATAATAAACGAAT] [+] EMBL BM598392 [ ccGAGCAGCTCGATGAAGATGAGATGTACACGATCCAGGTGTTTGCCCTATCGACCACCAACTACACCAGTGGCAGCAATGAGTACGAGCTGTACGTCTACCCTTACCGGCGTGTCAAGGTGATGACGGTCAGTGGCGTGCTGATACTGCTGTTCTGTCTTGCCGTCATCAGCACGTTGCTCTACATGAAGCGGAAACGAATTCGGCAGCTGCGTGAAGCGGAAAATATGAAAATATAAGCCATAGAAACGACCCAAACCGTTACATACATCCGTTGAAAAGAACAAAAACACTTACGCGTCAACTCTTT CACACACACAT ACACACACAGACATCCCCACCATACAGCCGCATGTTAAGCAATGTCGTCCAGGGATTCGCCATGCTCAGATACGTCTCCATGGTCATGTGACCGTTGTAGTCCTTTTTTCGATACTGACCTGCCGAAAGTTCCAGCTGCCCCGTTTCGGAAGTAGTGTGTAGTGTTCGTTTGTAGTAGATATTGTCGTTTTAGCATAGCGGAATATAATATGATAGGAAAATACGAAACAAAACAGTATGAAGCACCAGAAGATCATATATTAATAAAAGTGTTAATCGTTGAACGTTGAGAAACTGTGTG TGT TGCTG TCAGTTGATGCATTGGTTGCAAAGTAGT ] [+] EMBL BX612284 [ CGTGAAGCGGAAAATATGAAAATATAAGCCATAGAAACGACCCAAACCGTTACATACATCCGTTGAAAAGAACAAAAACACTTACGTGTCAACTCTTTCACACACACACATACACACACACAGACATCCCCACCATACAGCCGCATGTTAAGCAATGTCGTCCAGGGATTCGCCATGCTCAGATACTTCTCCATGACCATGTGACCGTTGTAGTCCTTTTTTCGATACTGACCTGCCGAAAGTTCCAGCTGCCCCGTTTCGGAAGTAGTGTGTAGTGTTCGTTTGTAGTACATATTGTCGTTTTAGCATAGCGGAATATATTATGATAGGAAAATACGAAACAAAACAGTATGAAGCACCAGAAGAGCATATATTAATAAAAGTGTTAATCGTTGAACGTTGAGAAACTGT TGCTGTCAGCAGAAAACTAAGTTGATGCATTGGTTGCAAAGTAGTTGAAATCATACTCAAAAAAAAAAGAGGAGACAGGTACTATTGGAAAGCAGTAGGACGGTTTTGTTTATCTTTAGTGCGAAACAATGAGATCTTGTCATTAACTAATAATAAACGAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6242#0 -----CCCCGAGGTTTTTTTCACCATCAAACCGAAGCT----CGTGTACGTCACCAATGA 51 consensus_6242#1 CCGAGACGCATTATATACTTGAGCAGCTTTATGAAGATGAGATGTATACGATCCAGGTGT 60 * * * * ** * ** * **** * ** **** * ** consensus_6242#0 TGGGCGGTACGGTA--CAGATGCACT-------GTGATGCACGGGATCGCGACGGTTATC 102 consensus_6242#1 TTGCCCTTTCGACCACCAACTACACCAGTGGCAGCAATTAGTACGAGCTCTACGTCTACC 120 * * * * ** ** * *** * ** ** * * *** ** * consensus_6242#0 ACATTCCGCAGATAACGTGGATAAAGAAAGATGGTAGCCTTCTGCCGTACGGTCGATTCT 162 consensus_6242#1 CTTACCGGCGTGTCAAGGTGATGACGGTTAGTGGCGTGCTGATACTGCTGTTCTGTCTCG 180 * ** * * * *** * * *** ** * * * * ** consensus_6242#0 CCGTGAACGG-AGGTAACATAACG---ATCGAGGACA---TCGTTGAGTCCG---ATCGG 212 consensus_6242#1 CCGTCATCAGCACGTTGCTCTACATGAAGCGGAAACGAATTCGGCAGCTGCGTGAAGCGG 240 **** * * * * ** * ** * ** ** *** * ** * *** consensus_6242#0 GGAATCTACGGCTGTCAGGCG-ACGAACGAGGCGGCACGTGACGG----CCGATGCAGAG 267 consensus_6242#1 AAAATATGAAAATATAAGCCATAGAAACGACCCAAACCGTTACATACATCCGTTGAAAAG 300 *** * * * ** * * ***** * *** ** *** ** * ** consensus_6242#0 ATTATGATTGAAAACGTGTCACCGCGGGCACCGTACAATCTGACCGGCAACAGTACCGAC 327 consensus_6242#1 AACAAAAACACTTACGTGTCAACTCTTTCAC-ACACACACATACACACA----CACAGAC 355 * * * ******** * * *** *** * ** ** ** *** consensus_6242#0 ACCTCGATCACGATCCGCTGGGCGCCGGGCTATATTCGCCAGTACCTGGAGTACATCATC 387 consensus_6242#1 ATCCCCACCATA--CAGCCGCATGTTAAGCAATGTCGTCCAG------GGATTCGCCAT- 406 * * * * ** * ** * * ** ** * **** * * * *** consensus_6242#0 TGGTACCGGTTAGCGGAAGCGCCCGAGTGGCCGAACACTCAAGGTAAATGATAAGCATTG 447 consensus_6242#1 --GCTCAGATACGTCTCCATGACCATGTGACCG----TTGTAGTCCTTTTTTCGATACTG 460 * * * * * * ** *** *** * ** * * * ** consensus_6242#0 TCCTCGAGGCCAACGATCAACAACTTGCAGCCAGCGCGGGAGTACGAGTTCATGGTGCTA 507 consensus_6242#1 ACCT----GCCGAAAGTT--CCAGCTGCC-CCGTTTCGGAAGTA-GTGTGTAGTGTTCGT 512 *** *** * * * * *** ** *** **** * ** * ** * consensus_6242#0 TGTCAGGACA-ACTACGGTGATGGACACTGTTTAGCAAAGCGTTCCGTTACTTTACAAAC 566 consensus_6242#1 TTGTAGTACATATTGTCGTTTTAG-CATAGCGGAATATATTATGATAGGAAAATACGAAA 571 * ** *** * * ** * * ** * * * * * * *** ** consensus_6242#0 CGACTGAGTTTGAGCAACCGGAAAATGGACTGCAAGATGCACTGCTCCAGTTCAGCCAGA 626 consensus_6242#1 CAAAACAGTATGAAGCACCAGAAGAGCATATATTAATAAAAGTGTT-------AATCG-- 622 * * *** *** *** *** * * * * ** * * * consensus_6242#0 TCGGATCGCCGAGAAACTTTTACGTGCGCAAAGAGCAGGACAACTTTGTG-GCCCGCTGG 685 consensus_6242#1 -TTGAACGTTGAGAAACTGTTGC---TGTCAGCAGAAAACTAAGTTGATGCATTGGTTGC 678 ** ** ******** ** * * * ** * ** ** ** * ** consensus_6242#0 GAACCGCCGGAGCTCGGGCTGGATCAGCTTCGCTTCTACATTCTGCGCTGGTGGATCGAG 745 consensus_6242#1 AAAGTAGTTGAAATCATACTCAAA-AAAAAAGAGGAGACAGGTACTATTGGAAAGCAGTA 737 ** ** ** ** * * * *** *** * consensus_6242#0 CCACAGCACAAACTGCACGGTAGTGCAGAAACATCCGAGACGCATTATATACTTG-AGCA 804 consensus_6242#1 GGACGGTTTTGTTTAT-CTTTAGTGC-GAAACAATGAGATCTTGTCATTAACTAATAATA 795 ** * * * ****** ****** * * ** *** * * consensus_6242#0 GCTCGATG 812 consensus_6242#1 AACGAAT- 802 ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||