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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6242#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 812 fasta sequence
[CCCCGAGGTTTTTTTCACCATCAAACCGAAGCTCGTGTACGTCACCAATGATGGGCGGTACGGTACAGATGCACTGTGATGCACGGGATCGCGACGGTTATCACATTCCGCAGATAACGTGGATAAAGAAAGATGGTAGCCTTCTGCCGTAC-GGTCGATTCTCCGTGAACGGAGGTAACATAACGATCGAGGACATCGTTGAGTCCGATCGGGGAATCTACGGCTGTCAGGCGACGAACGAGGCGG-CA-CGTGACGGCCGATGCAGAGATTATGATTGAAAACGTGTCACCGCGGGCACCGTACAATCTGACCGGCAACAGTACCGACACCTCGATCACGATCCGCTGGGCGCCGGGCTATATTCGCCAGTACCTGGAGTACATCATCTGGTACCGGTTAGCGGAAGCGCCCGAGTGGCCGAACACTCAAGGTAAATGATAAGCATTGTCCTCGAGGCCAACGATCAACAACTTGCAGCCAGCGCGGGAGTACGAGTTCATGGTGCTATGTCAGGACAACTACGGTGATGGACACTGTTTAGCAAAGCGTTCCGTTACTTTA-CAAACCGACTGAGTTTGAGCAACCGGAAAATGGACTGCAAGATGCACTGCTCCAGTTCAGCCAGATCGGATCGCCGAGAAACTTTTACGTGCGCAAAGAGCAGGACAACTTTGTGGCCCGCTGGGAACCGCCGGAGCTCGGGCTGGATCAGCTTCGCTTCTACATTCTGCGCTGGTGGATCGAGCCACAGCACAAACTGCACGGTAGTGCAGAAACATCCGAGACGCATTATATACTTGAGCAGCTCGATG]
[+] EMBL AL694196 [CCCCGAGGTTTTTTTCACCATCAAACCGAAGCTCGTGTACGTCACCAATGATGGGCGGTACGGTACAGATGCACTGTGATGCACGGGATCGCGACGGTTATCACATTCCGCAGATAACGTGGATAAAGAAAGATGGTAGCCTTCTGCCGTAC GGTCGATTCTCCGTGAACGGAGGTAACATAACGATCGAGGACATCGTTGAGTCCGATCGGGGAATCTACGGCTGTCAGGCGACGAACGAGGCGG CA CGTGACGGCCGATGCAGAGATTATGATTGAAAACGTGTCACCGCGGGCACCGTACAATCTGACCGGCAACAGTACCGACACCTCGATCACGATCCGCTGGGCGCCGGGCTATATTCGCCAGTACCTGGAGTACATCATCTGGTACCGGTTAGCGGAAGCGCCCGAGTGGCCGAACACTCAAGGTAAATGATAAGCATTGTCCTCGAGGCCAACGATCAACAACTTGCAGCCAGCGCGGGAGTACGAGTTCATGGTGCTATGTCAGGACAACTACGGTGATGGACACTGTTTAGCAAAGCGTTCCGTTACTTTA CAAACCGACTGAGTTTG ]
[+] EMBL BM640526 [ ccgcccacgCGTCCGGGTCGATTCTCCGTGAACGGAGGCAACATTACGATCGAGGACATCGTTGAGTCCGATCGGGGAATCTACGGCTGTCAGGCGACGAACGAGGCGGCCACCGTGACGGCCGATGCAGAGATTATGATTGAAAACGTGTCACCGCGGGCACCGTACAATCTGACCGGCAACAGTACGGACACCTCGATCACGATCCGTTGGGCGCCGGGCTATATTCGCCAGTATCTGGAGTACATCATCTGGTACCGGTTAGCGGAAGCGCCCGAGTGG CGAACTCTCAAAGTTAATGATAAGCA TGTCCTGGAGG CAACGATCACCAACTTGCAGCCAGCGCGGGAGTACGAGTTCATGGTGCTATGTCAGGACAACTACGGTGATGGA A TGTTTAGCAAAGCGTTCCGTTACTTTACCAAACCGACTGAGTTTGAGCAACCGGAAAATGGACTGCAAGATGCACTGCTCCAGTTCAGCCAGATCGGATCGCCGAGAAACTTTTACGTGCGCAAAGAGCAGGACAACTTTGTGGCCCGCTGGGAACCGCCGGAGCTCGGGCTGGATCAGCTTCGCTTCTACATTCTGCGCTGGTGGATCGAGCCACAGCACAAACTGCACGGTAGTGCAGAAACATCCGAGACGCATTATATACTTGAGCAGCTCGATG]
consensusID : consensus_6242#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 802 fasta sequence
[CCGAGACGCATTATATACTTGAGCAGCTTTATGAAGATGAGATGTATACGATCCAGGTGTTTGCCCTTTCGACCACCAACTACACCAGTGGCAGCAATTAGTACGAGCTCTACGTCTACCCTTACCGGCGTGTCAAGGTGATGACGGTTAGTGGCGTGCTGATACTGCTGTTCTGTCTCGCCGTCATCAGCACGTTGCTCTACATGAAGCGGAAACGAATTCGGCAGCTGCGTGAAGCGGAAAATATGAAAATATAAGCCATAGAAACGACCCAAACCGTTACATACATCCGTTGAAAAGAACAAAAACACTTACGTGTCAACTCTTTCACACACACACATACACACACACAGACATCCCCACCATACAGCCGCATGTTAAGCAATGTCGTCCAGGGATTCGCCATGCTCAGATACGTCTCCATGACCATGTGACCGTTGTAGTCCTTTTTTCGATACTGACCTGCCGAAAGTTCCAGCTGCCCCGTTTCGGAAGTAGTGTGTAGTGTTCGTTTGTAGTACATATTGTCGTTTTAGCATAGCGGAATATATTATGATAGGAAAATACGAAACAAAACAGTATGAAGCACCAGAAGAGCATATATTAATAAAAGTGTTAATCGTTGAACGTTGAGAAACTGT-TGCTGTCAGCAGAAAACTAAGTTGATGCATTGGTTGCAAAGTAGTTGAAATCATACTC-AAAAAAAAAGAGGAGACAGGTACTATTGGAAAGCAGTAGGACGGTTTTGTTTATCTTTAGTGCGAAACAATGAGATCTTGTCATTAACTAATAATAAACGAAT]
[+] EMBL BX608422 [CCGAGACGCATTATATACTTGAGCAGCTTTATGAAGATGAGATGTATACGATCCAGGTGTTTGCCCTTTCGACCACCAACTACACCAGTGGCAGCAATTAGTACGAGCTCTACGTCTACCCTTACCGGCGTGTCAAGGTGATGACGGTTAGTGGCGTGCTGATACTGCTGTTCTGTCTCGCCGTCATCAGCACGTTGCTCTACATGAAGCGGAAACGAATTCGGCAGCTGCGTGAAGCGGAAAATATGAAAATATAAGCCATAGAAACGACCCAAACCGTTACATACATCCGTTGAAAAGAACAAAAACACTTACGTGTCAACTCTTTCACACACACACATACACACACACAGACATCCCCACCATACAGCCGCATGTTAAGCAATGTCGTCCAGGGATTCGCCATGCTCAGATACGTCTCCATGACCATGTGACCGTTGTAGTCCTTTTTTCGATACTGACCTGCCGAAAGTTCCAGCTGCCCCGTTTCGGAAGTAGTGTGTAGTGTTCGTTTGTAGTACATATTGTCGTTTTAGCATAGCGGAATATATTATGATAGGAAAATACGAAACAAAACAGTATGAAGCACCAGAAGAGCATATATTAATAAAAGTGTTAATCGTTGAACGTTGAGAAACTGT TGCTGTCAGCAGAAAACTAAGTTGATGCATTGGTTGCAAAGTAGTTGAAATCATACTC AAAAAAAAAGAGGAGACAGGTACTATTGGAAAGCAGTAGGACGGTTTTGTTTATCTTTAGTGCGAAACAATGAGATCTTGTCATTAACTAATAATAAACGAAT]
[+] EMBL BM598392 [ ccGAGCAGCTCGATGAAGATGAGATGTACACGATCCAGGTGTTTGCCCTATCGACCACCAACTACACCAGTGGCAGCAATGAGTACGAGCTGTACGTCTACCCTTACCGGCGTGTCAAGGTGATGACGGTCAGTGGCGTGCTGATACTGCTGTTCTGTCTTGCCGTCATCAGCACGTTGCTCTACATGAAGCGGAAACGAATTCGGCAGCTGCGTGAAGCGGAAAATATGAAAATATAAGCCATAGAAACGACCCAAACCGTTACATACATCCGTTGAAAAGAACAAAAACACTTACGCGTCAACTCTTT CACACACACAT ACACACACAGACATCCCCACCATACAGCCGCATGTTAAGCAATGTCGTCCAGGGATTCGCCATGCTCAGATACGTCTCCATGGTCATGTGACCGTTGTAGTCCTTTTTTCGATACTGACCTGCCGAAAGTTCCAGCTGCCCCGTTTCGGAAGTAGTGTGTAGTGTTCGTTTGTAGTAGATATTGTCGTTTTAGCATAGCGGAATATAATATGATAGGAAAATACGAAACAAAACAGTATGAAGCACCAGAAGATCATATATTAATAAAAGTGTTAATCGTTGAACGTTGAGAAACTGTGTG TGT TGCTG TCAGTTGATGCATTGGTTGCAAAGTAGT ]
[+] EMBL BX612284 [ CGTGAAGCGGAAAATATGAAAATATAAGCCATAGAAACGACCCAAACCGTTACATACATCCGTTGAAAAGAACAAAAACACTTACGTGTCAACTCTTTCACACACACACATACACACACACAGACATCCCCACCATACAGCCGCATGTTAAGCAATGTCGTCCAGGGATTCGCCATGCTCAGATACTTCTCCATGACCATGTGACCGTTGTAGTCCTTTTTTCGATACTGACCTGCCGAAAGTTCCAGCTGCCCCGTTTCGGAAGTAGTGTGTAGTGTTCGTTTGTAGTACATATTGTCGTTTTAGCATAGCGGAATATATTATGATAGGAAAATACGAAACAAAACAGTATGAAGCACCAGAAGAGCATATATTAATAAAAGTGTTAATCGTTGAACGTTGAGAAACTGT TGCTGTCAGCAGAAAACTAAGTTGATGCATTGGTTGCAAAGTAGTTGAAATCATACTCAAAAAAAAAAGAGGAGACAGGTACTATTGGAAAGCAGTAGGACGGTTTTGTTTATCTTTAGTGCGAAACAATGAGATCTTGTCATTAACTAATAATAAACGAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6242#0 -----CCCCGAGGTTTTTTTCACCATCAAACCGAAGCT----CGTGTACGTCACCAATGA 51
consensus_6242#1 CCGAGACGCATTATATACTTGAGCAGCTTTATGAAGATGAGATGTATACGATCCAGGTGT 60
* * * * ** * ** * **** * ** **** * **
consensus_6242#0 TGGGCGGTACGGTA--CAGATGCACT-------GTGATGCACGGGATCGCGACGGTTATC 102
consensus_6242#1 TTGCCCTTTCGACCACCAACTACACCAGTGGCAGCAATTAGTACGAGCTCTACGTCTACC 120
* * * * ** ** * *** * ** ** * * *** ** *
consensus_6242#0 ACATTCCGCAGATAACGTGGATAAAGAAAGATGGTAGCCTTCTGCCGTACGGTCGATTCT 162
consensus_6242#1 CTTACCGGCGTGTCAAGGTGATGACGGTTAGTGGCGTGCTGATACTGCTGTTCTGTCTCG 180
* ** * * * *** * * *** ** * * * * **
consensus_6242#0 CCGTGAACGG-AGGTAACATAACG---ATCGAGGACA---TCGTTGAGTCCG---ATCGG 212
consensus_6242#1 CCGTCATCAGCACGTTGCTCTACATGAAGCGGAAACGAATTCGGCAGCTGCGTGAAGCGG 240
**** * * * * ** * ** * ** ** *** * ** * ***
consensus_6242#0 GGAATCTACGGCTGTCAGGCG-ACGAACGAGGCGGCACGTGACGG----CCGATGCAGAG 267
consensus_6242#1 AAAATATGAAAATATAAGCCATAGAAACGACCCAAACCGTTACATACATCCGTTGAAAAG 300
*** * * * ** * * ***** * *** ** *** ** * **
consensus_6242#0 ATTATGATTGAAAACGTGTCACCGCGGGCACCGTACAATCTGACCGGCAACAGTACCGAC 327
consensus_6242#1 AACAAAAACACTTACGTGTCAACTCTTTCAC-ACACACACATACACACA----CACAGAC 355
* * * ******** * * *** *** * ** ** ** ***
consensus_6242#0 ACCTCGATCACGATCCGCTGGGCGCCGGGCTATATTCGCCAGTACCTGGAGTACATCATC 387
consensus_6242#1 ATCCCCACCATA--CAGCCGCATGTTAAGCAATGTCGTCCAG------GGATTCGCCAT- 406
* * * * ** * ** * * ** ** * **** * * * ***
consensus_6242#0 TGGTACCGGTTAGCGGAAGCGCCCGAGTGGCCGAACACTCAAGGTAAATGATAAGCATTG 447
consensus_6242#1 --GCTCAGATACGTCTCCATGACCATGTGACCG----TTGTAGTCCTTTTTTCGATACTG 460
* * * * * * ** *** *** * ** * * * **
consensus_6242#0 TCCTCGAGGCCAACGATCAACAACTTGCAGCCAGCGCGGGAGTACGAGTTCATGGTGCTA 507
consensus_6242#1 ACCT----GCCGAAAGTT--CCAGCTGCC-CCGTTTCGGAAGTA-GTGTGTAGTGTTCGT 512
*** *** * * * * *** ** *** **** * ** * ** *
consensus_6242#0 TGTCAGGACA-ACTACGGTGATGGACACTGTTTAGCAAAGCGTTCCGTTACTTTACAAAC 566
consensus_6242#1 TTGTAGTACATATTGTCGTTTTAG-CATAGCGGAATATATTATGATAGGAAAATACGAAA 571
* ** *** * * ** * * ** * * * * * * *** **
consensus_6242#0 CGACTGAGTTTGAGCAACCGGAAAATGGACTGCAAGATGCACTGCTCCAGTTCAGCCAGA 626
consensus_6242#1 CAAAACAGTATGAAGCACCAGAAGAGCATATATTAATAAAAGTGTT-------AATCG-- 622
* * *** *** *** *** * * * * ** * * *
consensus_6242#0 TCGGATCGCCGAGAAACTTTTACGTGCGCAAAGAGCAGGACAACTTTGTG-GCCCGCTGG 685
consensus_6242#1 -TTGAACGTTGAGAAACTGTTGC---TGTCAGCAGAAAACTAAGTTGATGCATTGGTTGC 678
** ** ******** ** * * * ** * ** ** ** * **
consensus_6242#0 GAACCGCCGGAGCTCGGGCTGGATCAGCTTCGCTTCTACATTCTGCGCTGGTGGATCGAG 745
consensus_6242#1 AAAGTAGTTGAAATCATACTCAAA-AAAAAAGAGGAGACAGGTACTATTGGAAAGCAGTA 737
** ** ** ** * * * *** *** *
consensus_6242#0 CCACAGCACAAACTGCACGGTAGTGCAGAAACATCCGAGACGCATTATATACTTG-AGCA 804
consensus_6242#1 GGACGGTTTTGTTTAT-CTTTAGTGC-GAAACAATGAGATCTTGTCATTAACTAATAATA 795
** * * * ****** ****** * * ** *** * *
consensus_6242#0 GCTCGATG 812
consensus_6242#1 AACGAAT- 802
**
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||