These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6245#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1252 fasta sequence [AGGATAACCACATTTGCTCGACGATTCGCACCCATGCATACACACACACGCGCACTACCACAGGCGAACAGGCGAAGGAAGGCGAGGCACAGGCCCGCAAACGTGTCAATATACAAACTTGAATTTAGAAGTGAATCCGTGAGCAAATTACAACTTGAAATCAAATTATACATACCTTCAGAACGTTTACATACACAAATCTAGCAGCATTACAAGGGAAAAGCGAAAAGCGCCCATAACGATAATTGGGGTGAATGACGCCGCAATACTCCTCGCGTTTACGCAAGCGCGGCTGAACAAAGACAGAGTACTAACCGAGACGGCCGGGAGAAAGGGAGAGCGAAAAAAGAAAAACCACGAGGACAATATTTAGTATTTTCAGTGCAGATTAATACTGCATTTGTTGCGTAATGTGTAACAATAAAGGGAAAAAGGCCTGGAATGAGGCAACGGGGAGGGGGATGGTGGGTACTAGAATGGCGCAACGCGAGGCTTGGCTTGCCGAATGGGCTACTACACCCTGGTAGAGCGTGTATTTTGAATGGCGATCGTGTAGTTATGTACGTTTAAAATATCGATCATCAACCATAACGAGTTCACACACACACACACACGCGCATGCATGCATACATTAGCTAACGTTTACATTGTACGGTTTACCCACTTACTGCTGCAGCCTGCGGGGAATGCAACACCTCTCTAACTACTATATAGTAGGCTGGATGGAGGCTGGTAGTGCAGAAATTACTGTGCTGTCTCTTTTGCGGAACGTTTTTAATGTGTAACTTAACTAGTAGCCTTTGGTTTTAACTTCCTTTCCTTAGTTGAGTTTTAGCACGTGCGTGCGCGTTTCGGGNAGATGATCGAAACGCGACACATTACAATTTCGAATTCGCGCCATTCTATCGTTCTTTTTTTACGAACACTCCCTCCTATGTTTTCTTTTGTTTTAGTGCAAATTCTTTCGTTTAATTTATTTCATTGTGAATCGAAAAGCTTCTAAAATAATCTTTATTTATGTGTAGCAGTCAAAATATGTGCCGCGCATGACGAGAGGAAGAGAGAGAGAGAGAAAGGGATTATACTAATTGTGTATCAAAAGGGGCACGATTTAACTGCAACTGTAAGTACACAAATCTGCATTTCGGACACACTGATGGGTTTCTTTTCAACTTCAGTGAGTAAAAGAGGGCTCAGTGATTAGAATGCAAGGAGAGCAGACAGGAAGGAGTGAATTAACGGTCTGAGTGGT] [+] EMBL BX626158 [AGGATAACCACATTTGCTCGACGATTCGCACCCATGCATACACACACACGCGCACTACCACAGGCGAACAGGCGAAGGAAGGCGAGGCACAGGCCCGCAAACGTGTCAATATACAAACTTGAATTTAGAAGTGAATCCGTGAGCAAATTACAACTTGAAATCAAATTATACATACCTTCAGAACGTTTACATACACAAATCTAGCAGCATTACAAGGGAAAAGCGAAAAGCGCCCATAACGATAATTGGGGTGAATGACGCCGCAATACTCCTCGCGTTTACGCAAGCGCGGCTGAACAAAGACAGAGTACTAACCGAGACGGCCGGGAGAAAGGGAGAGCGAAAAAAGAAAAACCACGAGGACAATATTTAGTATTTTCAGTGCAGATTAATACTGCATTTGTTGCGTAATGTGTAACAATAAAGGGAAAAAGGCCTGGAATGAGGCAACGGGGAGGGGGATGGTGGGTACTAGAATGGCGCAACGCGAGGCTTGGCTTGCCGAATGGGCTACTACACCCTGGTAGAGCGTGTATTTTGAATGGCGATCGTGTAGTTATGTACGTTTAAAATATCGATCATCAACCATAACGAGTTCACACACACACACACACGCGCATGCATGCATACATTAGCTAACGTTTACATTGTACGGGTTACCCACTTACTGCTGCAGCCTGCGGGGAATGCAACACCT ] [+] EMBL BM628958 [ ccgGCGAAAAGCGCCCATAACGATAATTGGGGTGAATGACGCCGCAATACTCCTCGCGTTTACGCAAGCGCGGCTGAACAAAGACAGAGTACTAACCGAGACGGCCGGGAGAAAGGGAGAGCGAAAAAAGAAAAACCACGAGGACAATATTTAGTATTTTCAGTGCAGATTAATACTGCATTTGTTGCGTAATGTGTAACAATAAAGGGAAAAAGGCCTGGAATGAGGCAACGGGGAGGGGGATGGTGGGTACTAGAATGGCGCAACGCGAGGCTTGGCTTGCCGAATGGGCTACTACACCCTGGTAGAGCGTGTATTTTGAATGGCGATCGTGTAGTTATGTACGTTTAAAATATCGATCATCAACCATAACGAGTTCACACACACACACACACGCGCATGCATGCATACATTAGCTAACGTTTACATTGTACGGTTTACCCACTTACTGCTGCAGCCTGC ] [+] EMBL BX625121 [ AAGGCCTGGAATGAGGCAACGGGGAGGGGGATGGTGGGTACTAGAATGGCGCAACGCGAGGCTTGGCTTGCCGAATGGGCTACTACACCCTGGTAGAGCGTGTATTTTGAATGGCGATCGTGTAGTTATGTACGTTTAAAATATCGATCATCAACCATAACGAGTTCACACACACACACACACGCGCATGCATGCATACATTAGCTAACGTTTACATTGTACGGTTTACCCACTTACTGCTGCAGCCTGCGGGGAATGCAACACCTCTCTAACTACTATATAGTAGGCTGGATGGAGGCTGGTAGTGCAGAAATTACTGTGCTGTCTCTTTTGCGGAACGTTTTTAATGTGTAACTTAACTAGTAGCCTTTGGTTTTAACTTCCTTTCCTTAGTTGAGTTTTAGCACGTGCGTGCGCGTTTCGGGNAGATGATCGAAACGCGACACATTACAATTTCGAATTCGCGCCATTCTATCGTTCTTTTTTTACGAACACTCCCTCCTATGTTTTCTTTTGTTTTAGTGCAAATTCTTTCGTTTAATTTATTTCATTGTGAATCGAAAAGCTTCTAAAATAATCTTTATTTATGTGTAGCAGTCAAAATATGTGCCGCGCATGACGAGAGGAAGAGAGAGAGAGAGAAAGGGATTATACTAATTGTGTATCAAAAGGGGCACGATTTAACTGCAACTGTAAGTACACAAATCTGCATTTCGGACACACTGATGGGTTTCTTTTCAACTTCAGTGAGTAAAAGAGGGCTCAGTGATTAGAATGCAAGGAGAGCAGACAGGAAGGAGTGAATTAACGGTCTGAGTGGT] consensusID : consensus_6245#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 681 fasta sequence [GACCCACGCGTCCGCGCGAGGCTTGGCTTGCCGAATGGGCTACTACACCCTGGTAGAGCGTGTATTTTGAATGGCGATCGTGTAGTTATGTACGTTTAAAATATCGATCATCAACCATAACGAGTTCACACACACACACACACGCGCATGCATGCATACATTAGCTAACGTTTACATTGTACGGTTTACCCACTTACTGCTGCAGCCTGCGGGGAATGCAACACCTCTCTAACTACTATATAGTAGGCTGGATGGAGGCTGGTAGTGCAGAAATTACTGTGCTGTCTCTTTTGCGGAACGGTTTTTAATGTGTAACTTAACTAGTAGCCTTTGGTTTTAACTTCCTTTCCTTAGTTGAGTTTTAGCACGTGCGTGCGCGTTTCGGGTAGATGATCGAAACGCGACACATTACAATTTCGAATTCGCGCCATTCTATCGTTCTTTTTTTACGAACACTCCCTCCTATGTTTTCTTTTGTTTTAGTGCAAATTCTTTCGTTTAATTTATTTCATTGTGAATCGAAAAGCTTCTAAAATAATCTTTATTTATGTGTAGCAGTCAAAATATGTGCCGCGCATGACGAGAGGAAGAGAGAGAGAGAGAAAGGGATTATACTAATTGTGTATCAAAAGGGGCACGATTTAACTGCAACTGTAAGTACACAAATCTGCATTTCGGACA] [+] EMBL BM591883 [GACCCACGCGTCCGCGCGAGGCTTGGCTTGCCGAATGGGCTACTACACCCTGGTAGAGCGTGTATTTTGAATGGCGATCGTGTAGTTATGTACGTTTAAAATATCGATCATCAACCATAACGAGTTCACACACACACACACACGCGCATGCATGCATACATTAGCTAACGTTTACATTGTACGGTTTACCCACTTACTGCTGCAGCCTGCGGGGAATGCAACACCTCTCTAACTACTATATAGTAGGCTGGATGGAGGCTGGTAGTGCAGAAATTACTGTGCTGTCTCTTTTGCGGAACGGTTTTTAATGTGTAACTTAACTAGTAGCCTTTGGTTTTAACTTCCTTTCCTTAGTTGAGTTTTAGCACGTGCGTGCGCGTTTCGGGTAGATGATCGAAACGCGACACATTACAATTTCGAATTCGCGCCATTCTATCGTTCTTTTTTTACGAACACTCCCTCCTATGTTTTCTTTTGTTTTAGTGCAAATTCTTTCGTTTAATTTATTTCATTGTGAATCGAAAAGCTTCTAAAATAATCTTTATTTATGTGTAGCAGTCAAAATATGTGCCGCGCATGACGAGAGGAAGAGAGAGAGAGAGAAAGGGATTATACTAATTGTGTATCAAAAGGGGCACGATTTAACTGCAACTGTAAGTACACAAATCTGCATTTCGGACA] consensusID : consensus_6245#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 618 fasta sequence [AGCCAGAATCGNCACGAGGGGAATGAGGCAACGGGGAGGGGGATGGTGGGTACTAGAATGGCGCAACGCGAGGCTTGGCTTGCCGAATGGGCTACTACACCCTGGTAGAGCGTGTATTTTGAATGGCGATCGTGTAGTTATGTACGTTTAAAATATCGATCATCAACCATAACGAGTTCACACACACACACACACACGCGCATGCATGCATACATTAGCTAACGTTTACATTGTACGGTTTACCCACTTACTGCTGCAGCCTGCGGGGAATGCAACACCTCTCTAACTACTATATAGTAGGCTGGATGGAGGCTGGTAGTGCAGAAATTACTGTGCTGTCTCTTTTGCGGAACGGTTTTTAATGTGTAACTTAACTAGTAGCCTTTGGTTTTAACTTCCTTTCCTTAGTTGAGTTTTAGCACGTGCGTGCGCGTTTCGGGTAGATGTTCGAAACGCGACACATTACAATTTCGAATTCGCGCCATTCTTTCTTTCATTTTTTACGAACACTCCCTCCTGTTTTTATTTTCTTTCAGTTTAGNTGCAAATTCTTTCGTTTAACTTTATTTCATTGTGTATCGAAAAGCTTCTAACAATAAATCTTTATNTTATCGTCGT] [+] EMBL BX467389 [AGCCAGAATCGNCACGAGGGGAATGAGGCAACGGGGAGGGGGATGGTGGGTACTAGAATGGCGCAACGCGAGGCTTGGCTTGCCGAATGGGCTACTACACCCTGGTAGAGCGTGTATTTTGAATGGCGATCGTGTAGTTATGTACGTTTAAAATATCGATCATCAACCATAACGAGTTCACACACACACACACACACGCGCATGCATGCATACATTAGCTAACGTTTACATTGTACGGTTTACCCACTTACTGCTGCAGCCTGCGGGGAATGCAACACCTCTCTAACTACTATATAGTAGGCTGGATGGAGGCTGGTAGTGCAGAAATTACTGTGCTGTCTCTTTTGCGGAACGGTTTTTAATGTGTAACTTAACTAGTAGCCTTTGGTTTTAACTTCCTTTCCTTAGTTGAGTTTTAGCACGTGCGTGCGCGTTTCGGGTAGATGTTCGAAACGCGACACATTACAATTTCGAATTCGCGCCATTCTTTCTTTCATTTTTTACGAACACTCCCTCCTGTTTTTATTTTCTTTCAGTTTAGNTGCAAATTCTTTCGTTTAACTTTATTTCATTGTGTATCGAAAAGCTTCTAACAATAAATCTTTATNTTATCGTCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6245#0 AGGATAACCACATTTGCTCGACGATTCGCACCCATGCATACACACACACGCGCACTACCA 60 consensus_6245#1 ------------------------------------------------------------ consensus_6245#2 ------------------------------------------------------------ consensus_6245#0 CAGGCGAACAGGCGAAGGAAGGCGAGGCACAGGCCCGCAAACGTGTCAATATACAAACTT 120 consensus_6245#1 ------------------------------------------------------------ consensus_6245#2 ------------------------------------------------------------ consensus_6245#0 GAATTTAGAAGTGAATCCGTGAGCAAATTACAACTTGAAATCAAATTATACATACCTTCA 180 consensus_6245#1 ------------------------------------------------------------ consensus_6245#2 ------------------------------------------------------------ consensus_6245#0 GAACGTTTACATACACAAATCTAGCAGCATTACAAGGGAAAAGCGAAAAGCGCCCATAAC 240 consensus_6245#1 ------------------------------------------------------------ consensus_6245#2 ------------------------------------------------------------ consensus_6245#0 GATAATTGGGGTGAATGACGCCGCAATACTCCTCGCGTTTACGCAAGCGCGGCTGAACAA 300 consensus_6245#1 ------------------------------------------------------------ consensus_6245#2 ------------------------------------------------------------ consensus_6245#0 AGACAGAGTACTAACCGAGACGGCCGGGAGAAAGGGAGAGCGAAAAAAGAAAAACCACGA 360 consensus_6245#1 ------------------------------------------------------------ consensus_6245#2 ------------------------------------------------------------ consensus_6245#0 GGACAATATTTAGTATTTTCAGTGCAGATTAATACTGCATTTGTTGCGTAATGTGTAACA 420 consensus_6245#1 ------------------------------------------------------------ consensus_6245#2 -----------------------------------------------------------A 1 consensus_6245#0 ATAAAGGGAAAAAGGCCTGGAATGAGGCAACGGGGAGGGGGATGGTGGGTACTAGAATGG 480 consensus_6245#1 ------------------------------------------------------GACCCA 6 consensus_6245#2 GCCAGAATCGNCACGAGGGGAATGAGGCAACGGGGAGGGGGATGGTGGGTACTAGAATGG 61 ** consensus_6245#0 CGCA---ACGCGAGGCTTGGCTTGCCGAATGGGCTACTACACCCTGGTAGAGCGTGTATT 537 consensus_6245#1 CGCGTCCGCGCGAGGCTTGGCTTGCCGAATGGGCTACTACACCCTGGTAGAGCGTGTATT 66 consensus_6245#2 CGCA---ACGCGAGGCTTGGCTTGCCGAATGGGCTACTACACCCTGGTAGAGCGTGTATT 118 *** **************************************************** consensus_6245#0 TTGAATGGCGATCGTGTAGTTATGTACGTTTAAAATATCGATCATCAACCATAACGAGTT 597 consensus_6245#1 TTGAATGGCGATCGTGTAGTTATGTACGTTTAAAATATCGATCATCAACCATAACGAGTT 126 consensus_6245#2 TTGAATGGCGATCGTGTAGTTATGTACGTTTAAAATATCGATCATCAACCATAACGAGTT 178 ************************************************************ consensus_6245#0 CACACACACACACACAC--GCGCATGCATGCATACATTAGCTAACGTTTACATTGTACGG 655 consensus_6245#1 CACACACACACACACAC--GCGCATGCATGCATACATTAGCTAACGTTTACATTGTACGG 184 consensus_6245#2 CACACACACACACACACACGCGCATGCATGCATACATTAGCTAACGTTTACATTGTACGG 238 ***************** ***************************************** consensus_6245#0 TTTACCCACTTACTGCTGCAGCCTGCGGGGAATGCAACACCTCTCTAACTACTATATAGT 715 consensus_6245#1 TTTACCCACTTACTGCTGCAGCCTGCGGGGAATGCAACACCTCTCTAACTACTATATAGT 244 consensus_6245#2 TTTACCCACTTACTGCTGCAGCCTGCGGGGAATGCAACACCTCTCTAACTACTATATAGT 298 ************************************************************ consensus_6245#0 AGGCTGGATGGAGGCTGGTAGTGCAGAAATTACTGTGCTGTCTCTTTTGCGGAACG-TTT 774 consensus_6245#1 AGGCTGGATGGAGGCTGGTAGTGCAGAAATTACTGTGCTGTCTCTTTTGCGGAACGGTTT 304 consensus_6245#2 AGGCTGGATGGAGGCTGGTAGTGCAGAAATTACTGTGCTGTCTCTTTTGCGGAACGGTTT 358 ******************************************************** *** consensus_6245#0 TTAATGTGTAACTTAACTAGTAGCCTTTGGTTTTAACTTCCTTTCCTTAGTTGAGTTTTA 834 consensus_6245#1 TTAATGTGTAACTTAACTAGTAGCCTTTGGTTTTAACTTCCTTTCCTTAGTTGAGTTTTA 364 consensus_6245#2 TTAATGTGTAACTTAACTAGTAGCCTTTGGTTTTAACTTCCTTTCCTTAGTTGAGTTTTA 418 ************************************************************ consensus_6245#0 GCACGTGCGTGCGCGTTTCGGGNAGATGATCGAAACGCGACACATTACAATTTCGAATTC 894 consensus_6245#1 GCACGTGCGTGCGCGTTTCGGGTAGATGATCGAAACGCGACACATTACAATTTCGAATTC 424 consensus_6245#2 GCACGTGCGTGCGCGTTTCGGGTAGATGTTCGAAACGCGACACATTACAATTTCGAATTC 478 ********************** ***** ******************************* consensus_6245#0 GCGCCATTCTATCGTTCTTTTTTTACGAACACTCCCTCCTAT----GTTTTCTTTTGTTT 950 consensus_6245#1 GCGCCATTCTATCGTTCTTTTTTTACGAACACTCCCTCCTAT----GTTTTCTTTTGTTT 480 consensus_6245#2 GCGCCATTCTTTCTTTCATTTTTTACGAACACTCCCTCCTGTTTTTATTTTCTTTCAGTT 538 ********** ** *** ********************** * ******** ** consensus_6245#0 TAGT-GCAAATTCTTTCGTTTAA-TTTATTTCATTGTGAATCGAAAAGCTTCTAA-AATA 1007 consensus_6245#1 TAGT-GCAAATTCTTTCGTTTAA-TTTATTTCATTGTGAATCGAAAAGCTTCTAA-AATA 537 consensus_6245#2 TAGNTGCAAATTCTTTCGTTTAACTTTATTTCATTGTGTATCGAAAAGCTTCTAACAATA 598 *** ****************** ************** **************** **** consensus_6245#0 A-TCTTTATTTATGTGTAGCAGTCAAAATATGTGCCGCGCATGACGAGAGGAAGAGAGAG 1066 consensus_6245#1 A-TCTTTATTTATGTGTAGCAGTCAAAATATGTGCCGCGCATGACGAGAGGAAGAGAGAG 596 consensus_6245#2 AATCTTTATNTTATCGTCGT---------------------------------------- 618 * ******* * ** * consensus_6245#0 AGAGAGAAAGGGATTATACTAATTGTGTATCAAAAGGGGCACGATTTAACTGCAACTGTA 1126 consensus_6245#1 AGAGAGAAAGGGATTATACTAATTGTGTATCAAAAGGGGCACGATTTAACTGCAACTGTA 656 consensus_6245#2 ------------------------------------------------------------ consensus_6245#0 AGTACACAAATCTGCATTTCGGACACACTGATGGGTTTCTTTTCAACTTCAGTGAGTAAA 1186 consensus_6245#1 AGTACACAAATCTGCATTTCGGACA----------------------------------- 681 consensus_6245#2 ------------------------------------------------------------ consensus_6245#0 AGAGGGCTCAGTGATTAGAATGCAAGGAGAGCAGACAGGAAGGAGTGAATTAACGGTCTG 1246 consensus_6245#1 ------------------------------------------------------------ consensus_6245#2 ------------------------------------------------------------ consensus_6245#0 AGTGGT 1252 consensus_6245#1 ------ consensus_6245#2 ------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||