These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6248#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 799 fasta sequence [CCGCCCACGCGTCCGGTATTCTTTTCATAACAAAAAAAAAAGAACCGCATCGCCTTGTGCGATGGGTGTCCCAAAAAATCTCATAAAACTTCAATCGAAGTCGAAGAAGCGTCGTGGTGTAACGAAACTGGGGATTTGGGGCGAACAGTTGACGACAAATTGCGTCCCAGTGGAGACTAAACGATAAGAAGTA-AT-GTTTTCCAAACCATGTGTAGTAGGGACGGAAAACTGTCGAGAATTGTTAGCAGCTTCGTGGAAATGGAGCACTTGAAACTAGGCTCTTTACTCTCATTTCTTACCTAAACAGCCACACCAGTTCTGTAGCATTGCAATAGATTTTAGAGTTATCGTTTGTTTTGGTGCGTGCACGGTTAGAGCAGGACGGTCACGAAGGAGCACGGTA-CTAAAATGACAAGTGCAAATTAGGTAAATAAATATAAAAACCAACCTCCCGGGTGCGATTGTAAGTGATAACTACTACTACTACTACTATATGGAACCGATACACAGCTCCAAACTGTGCGGAAAGTGTGAGGGTAGGCCTATTTCCACAAACAAGTGAAATGCCTGTCCAAGACAGC-GGTGCTTGATGTGGGACTTTGCGTGTTGTTAGGCTATGCTATAACAAGGGAGCGAAAATACCACAAGGATTATTAAACCTAACCCCATGGAATACACAGTAGCGCAGAGTAGATTCCTCTCCGACAGATTATACATCTCACAAGCATCGCTGCATGATTGTTGAAAAGAAGAAAAAAAAAACAAAACAAGCAAAAACACACNGTTAAACNTGAAGAGT] [+] EMBL BM608331 [CCGCCCACGCGTCCGGTATTCTTTTCATAACAAAAAAAAAAGAACCGCATCGCCTTGTGCGATGGGTGTCCCAAAAAATCTCATAAAACTTCAATCGAAGTCGAAGAAGCGTCGTGGTGTAACGAAACTGGGGATTTGGGGCGAACAGTTGACGACAAATTGCGTCCCAGTGGAGACTAAACGATAAGAAGTA AT GTTTTCCAAACCATGTGTAGTAGGGACGGAAAACTGTCGAGAATTGTTAGCAGCTTCGTGGAAATGGAGCACTTGAAACTAGGCTCTTTACTCTCATTTCTTACCTAAACAGCCACACCAGTTCTGTAGCATTGCAATAGATTTTAGAGTTATCGTTTGTTTTGGTGCGTGCACGGTTAGAGCAGGACGGTCACGAAGGAGCACGGTACCTAAAATGACAAGTGCAAATTAGGTAAATAAATATAAAAACCAACCTCCCGGGTGCGATTGTAAGTGATAACTACTACTACTACTACTATATGGAACCGATACACAGCTCCAAACTGTGCGGAAAGTGTGAGGGTAGGCCTATTTCCACAAACAAGTGAAATGCCTGTCCAAGACAGCGGGTGCTTGATGTGGGACTTTGCGTGTTGTTAGGCTATGCTATAACAAGGGAGCGAAAATACCACAAGGATTATTAAACCTAACCCCATGGg ] [+] EMBL BX623466 [ ATAACAAAAAAAAAAGAACCGCATCGCCTTGTGCGATGGGTGTCCCAAAAAATCTCATAAAACTTCAATCGAAGTCGAAGAAGCGTCGTGGTGTAACGAAACTGGGGATTTGGGGCGAACAGTTGACGACAAATTGCGTCCCAGTGGAGACTAAACGATAAGAAGTA AT GTTTTCCAAACCATGTGTAGTAGGGACGGAAAACTGTCGAGAATTGTTAGCAGCTTCGTGGAAATGGAGCACTTGAAACTAGGCTCTTTACTCTCATTTCTTACCTAAACAGCCACACCAGTTCTGTAGCATTGCAATAGATTTTAGAGTTATCGTTTGTTTTGGTGCGTGCACGGTTAGAGCAGGACGGTCACGAAGGAGCACGGTA CTAAAATGACAAGTGCAAATTAGGTAAATAAATATAAAAACCAACCTCCCGGGTGCGATTGTAAGTGATAACTACTACTACTACTACTATATGGAACCGATACACAGCTCCAAACTGTGCGGAAAGTGTGAGGGTAGGCCTATTTCCACAAACAAGTGAAATGCCTGTCCAAGACAGC GGTGCTTGATGTGGGACTTTGCGTGTTGTTAGGCTATGCTATAACAAGGGAGCGAAAATACCACAAGGATTATTAAACCTAACCCCATGGAATACACAGTAGCGCAGAGTAGATTCCTCTCCGACAGATTATACATCTCACAAGCATCGCTG ] [+] EMBL BX621073 [ GACTAAACGATAAGAAGTA ATCGTTTTCCAAACCATGTGTAGTAGGGACGGAAAACTGTCGAGAATTGTTAGCAGCTTCGTGGAAATGGAGCACTTGAAACTAGGCTCTTTACTCTCATTTCTTACCTAAACAGCCACACCAGTTCTGTAGCATTGCAATAGATTTTAGAGTTATCGTTTGTTTTGGTGCGTGCACGGTTAGAGCAGGACGGTCACGAAGGAGCACGGTA CTAAAATGACAAGTGCAAATTAGGTAAATAAATATAAAAACCAACCTCCCGGGTGCGATTGTAAGTGATAACTACTACTACTACTACTATATGGAACCGATACACAGCTCCAAACTGTGCGGAAAGTGTGAGGGTAGGCCTATTTCCACAAACAAGTGAAATGCCTGTCCAAGACAGC GGTGCTTGATGTGGGACTTTGCGTGTTGTTAGGCTATGCTATAACAAGGGAGCGAAAATACCACAAGGATTATTAAACCTAACCCCATGGAATACACAGTAGCGCAGAGTAGATTCCTCTCCGACAGATTATACATCTCACAAGCATCGCTGCATGATTGTTGAAAAGAAGAAAAAAAAAACAAAACAAGCAAAAACACACNGTTAAACNTGAAGAGT] [+] EMBL BX626448 [ CGATAAGAAGTANTT GTTTTCCAAACCATGTGTAGTAGGGACGGAAAACTGTCGAGAATTGTTAGCAGCTTCGTGGAAATGGAGCACTTGAAACTAGGCTCTTTACTCTCATTTCTTACCTAAACAGCCACACCAGTTCTGTAGCATTGCAATAGATTTTAGAGTTATCGTTTGTTTTGGTGCGTGCACGGTTAGAGCAGGACGGTCACGAAGGAGCACGGTA CTAAAATGACAAGTGCAAATTAGGTAAATAAATATAAAAACCAACCTCCCGGGTGCGATTGTAAGTGATAACTACTACTACTACTACTATATGGAACCGATACACAGCTCCAAACTGTGCGGAAAGTGTGAGGGTAGGCCTATTTCCACAAACAAGTGAAATGCCTGTCCAAGACAGC GGTGCTTGATGTGGGACTTTGCGTGTTGTTAGGCTATGCTATAACAAGGGAGCGAAAATACCACAAGGATTATTAAACCTAACCCCATGGAATACACAGTAGCGCAGAGTAGATTCCTCTCCGACAGATTATACATCTCACAAGCATCGCTGCATGATTGTT ] consensusID : consensus_6248#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 506 fasta sequence [GGCCAAGAATCCCGCACGAGTGAGCACTTGAAACTAGGCTCTTNCACTCTCATTTCTTACCTAAACAGGCCACACCAGTTCTGTAGCATTGCAATAGATTTTAGAGTTATCGTTTGTTTTGGTGCGTGCACGGTTAGAGCAGGACGGTCACGAAGGAGCACGGTACTAAAATGACAAGTGCAAATTAGGTAAATAAATATAAAAACCAACCTCCCGGGTGCGATTGTAAGTGATAACTACTACTACTACTACTATATGGAACCGATACACAGCTCCAAACTGTGCGGAAAGTGTGAGGGTAGGCCTATTTCCACAAACAAGTGAAATGCCTGTCCAAGACAGCGGTGCTTGATGTGGGACTTTGCGTGTTGTTAGGCTATGCTATAACAAGGGAGCGAAAATACCACAAGGATTATTAAACCTAACCCCGATGGAATACACAGTAGCGCAGAGTAGATTCCTCGTCCGACAGATTATACATCTCACAAGCATCGCGTGCATGATTG] [+] EMBL BX468245 [GGCCAAGAATCCCGCACGAGTGAGCACTTGAAACTAGGCTCTTNCACTCTCATTTCTTACCTAAACAGGCCACACCAGTTCTGTAGCATTGCAATAGATTTTAGAGTTATCGTTTGTTTTGGTGCGTGCACGGTTAGAGCAGGACGGTCACGAAGGAGCACGGTACTAAAATGACAAGTGCAAATTAGGTAAATAAATATAAAAACCAACCTCCCGGGTGCGATTGTAAGTGATAACTACTACTACTACTACTATATGGAACCGATACACAGCTCCAAACTGTGCGGAAAGTGTGAGGGTAGGCCTATTTCCACAAACAAGTGAAATGCCTGTCCAAGACAGCGGTGCTTGATGTGGGACTTTGCGTGTTGTTAGGCTATGCTATAACAAGGGAGCGAAAATACCACAAGGATTATTAAACCTAACCCCGATGGAATACACAGTAGCGCAGAGTAGATTCCTCGTCCGACAGATTATACATCTCACAAGCATCGCGTGCATGATTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6248#0 CCGCCCACGCGTCCGGTATTCTTTTCATAACAAAAAAAAAAGAACCGCATCGCCTTGTGC 60 consensus_6248#1 ------------------------------------------------------------ consensus_6248#0 GATGGGTGTCCCAAAAAATCTCATAAAACTTCAATCGAAGTCGAAGAAGCGTCGTGGTGT 120 consensus_6248#1 ------------------------------------------------------------ consensus_6248#0 AACGAAACTGGGGATTTGGGGCGAACAGTTGACGACAAATTGCGTCCCAGTGGAGACTAA 180 consensus_6248#1 ------------------------------------------------------------ consensus_6248#0 ACGATAAGAAGTAATGTTTTCCAAACCATGTGTAGTAGGGACGGAAAACTGTCGAGAATT 240 consensus_6248#1 -----------------------------------------------------------G 1 consensus_6248#0 GTTAGCAGCTTCGTGGAAATGGAGCACTTGAAACTAGGCTCTTT-ACTCTCATTTCTTAC 299 consensus_6248#1 GCCAAGAATCCCGCACGAGTG-AGCACTTGAAACTAGGCTCTTNCACTCTCATTTCTTAC 60 * * * ** * ** ********************* *************** consensus_6248#0 CTAAACAG-CCACACCAGTTCTGTAGCATTGCAATAGATTTTAGAGTTATCGTTTGTTTT 358 consensus_6248#1 CTAAACAGGCCACACCAGTTCTGTAGCATTGCAATAGATTTTAGAGTTATCGTTTGTTTT 120 ******** *************************************************** consensus_6248#0 GGTGCGTGCACGGTTAGAGCAGGACGGTCACGAAGGAGCACGGTACTAAAATGACAAGTG 418 consensus_6248#1 GGTGCGTGCACGGTTAGAGCAGGACGGTCACGAAGGAGCACGGTACTAAAATGACAAGTG 180 ************************************************************ consensus_6248#0 CAAATTAGGTAAATAAATATAAAAACCAACCTCCCGGGTGCGATTGTAAGTGATAACTAC 478 consensus_6248#1 CAAATTAGGTAAATAAATATAAAAACCAACCTCCCGGGTGCGATTGTAAGTGATAACTAC 240 ************************************************************ consensus_6248#0 TACTACTACTACTATATGGAACCGATACACAGCTCCAAACTGTGCGGAAAGTGTGAGGGT 538 consensus_6248#1 TACTACTACTACTATATGGAACCGATACACAGCTCCAAACTGTGCGGAAAGTGTGAGGGT 300 ************************************************************ consensus_6248#0 AGGCCTATTTCCACAAACAAGTGAAATGCCTGTCCAAGACAGCGGTGCTTGATGTGGGAC 598 consensus_6248#1 AGGCCTATTTCCACAAACAAGTGAAATGCCTGTCCAAGACAGCGGTGCTTGATGTGGGAC 360 ************************************************************ consensus_6248#0 TTTGCGTGTTGTTAGGCTATGCTATAACAAGGGAGCGAAAATACCACAAGGATTATTAAA 658 consensus_6248#1 TTTGCGTGTTGTTAGGCTATGCTATAACAAGGGAGCGAAAATACCACAAGGATTATTAAA 420 ************************************************************ consensus_6248#0 CCTAACCCC-ATGGAATACACAGTAGCGCAGAGTAGATTCCTC-TCCGACAGATTATACA 716 consensus_6248#1 CCTAACCCCGATGGAATACACAGTAGCGCAGAGTAGATTCCTCGTCCGACAGATTATACA 480 ********* ********************************* **************** consensus_6248#0 TCTCACAAGCATCGC-TGCATGATTGTTGAAAAGAAGAAAAAAAAAACAAAACAAGCAAA 775 consensus_6248#1 TCTCACAAGCATCGCGTGCATGATTG---------------------------------- 506 *************** ********** consensus_6248#0 AACACACNGTTAAACNTGAAGAGT 799 consensus_6248#1 ------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||