cluster # 6248

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Anopheles gambiae
cluster # 6248 cluster # 6248 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6248#0 length = 799 sequences # 4

consensus_6248#1 length = 506 sequences # 1

consensusID : consensus_6248#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 799
fasta sequence

                              [CCGCCCACGCGTCCGGTATTCTTTTCATAACAAAAAAAAAAGAACCGCATCGCCTTGTGCGATGGGTGTCCCAAAAAATCTCATAAAACTTCAATCGAAGTCGAAGAAGCGTCGTGGTGTAACGAAACTGGGGATTTGGGGCGAACAGTTGACGACAAATTGCGTCCCAGTGGAGACTAAACGATAAGAAGTA-AT-GTTTTCCAAACCATGTGTAGTAGGGACGGAAAACTGTCGAGAATTGTTAGCAGCTTCGTGGAAATGGAGCACTTGAAACTAGGCTCTTTACTCTCATTTCTTACCTAAACAGCCACACCAGTTCTGTAGCATTGCAATAGATTTTAGAGTTATCGTTTGTTTTGGTGCGTGCACGGTTAGAGCAGGACGGTCACGAAGGAGCACGGTA-CTAAAATGACAAGTGCAAATTAGGTAAATAAATATAAAAACCAACCTCCCGGGTGCGATTGTAAGTGATAACTACTACTACTACTACTATATGGAACCGATACACAGCTCCAAACTGTGCGGAAAGTGTGAGGGTAGGCCTATTTCCACAAACAAGTGAAATGCCTGTCCAAGACAGC-GGTGCTTGATGTGGGACTTTGCGTGTTGTTAGGCTATGCTATAACAAGGGAGCGAAAATACCACAAGGATTATTAAACCTAACCCCATGGAATACACAGTAGCGCAGAGTAGATTCCTCTCCGACAGATTATACATCTCACAAGCATCGCTGCATGATTGTTGAAAAGAAGAAAAAAAAAACAAAACAAGCAAAAACACACNGTTAAACNTGAAGAGT]

[+] EMBL BM608331             [CCGCCCACGCGTCCGGTATTCTTTTCATAACAAAAAAAAAAGAACCGCATCGCCTTGTGCGATGGGTGTCCCAAAAAATCTCATAAAACTTCAATCGAAGTCGAAGAAGCGTCGTGGTGTAACGAAACTGGGGATTTGGGGCGAACAGTTGACGACAAATTGCGTCCCAGTGGAGACTAAACGATAAGAAGTA AT GTTTTCCAAACCATGTGTAGTAGGGACGGAAAACTGTCGAGAATTGTTAGCAGCTTCGTGGAAATGGAGCACTTGAAACTAGGCTCTTTACTCTCATTTCTTACCTAAACAGCCACACCAGTTCTGTAGCATTGCAATAGATTTTAGAGTTATCGTTTGTTTTGGTGCGTGCACGGTTAGAGCAGGACGGTCACGAAGGAGCACGGTACCTAAAATGACAAGTGCAAATTAGGTAAATAAATATAAAAACCAACCTCCCGGGTGCGATTGTAAGTGATAACTACTACTACTACTACTATATGGAACCGATACACAGCTCCAAACTGTGCGGAAAGTGTGAGGGTAGGCCTATTTCCACAAACAAGTGAAATGCCTGTCCAAGACAGCGGGTGCTTGATGTGGGACTTTGCGTGTTGTTAGGCTATGCTATAACAAGGGAGCGAAAATACCACAAGGATTATTAAACCTAACCCCATGGg                                                                                                                               ]
[+] EMBL BX623466             [                          ATAACAAAAAAAAAAGAACCGCATCGCCTTGTGCGATGGGTGTCCCAAAAAATCTCATAAAACTTCAATCGAAGTCGAAGAAGCGTCGTGGTGTAACGAAACTGGGGATTTGGGGCGAACAGTTGACGACAAATTGCGTCCCAGTGGAGACTAAACGATAAGAAGTA AT GTTTTCCAAACCATGTGTAGTAGGGACGGAAAACTGTCGAGAATTGTTAGCAGCTTCGTGGAAATGGAGCACTTGAAACTAGGCTCTTTACTCTCATTTCTTACCTAAACAGCCACACCAGTTCTGTAGCATTGCAATAGATTTTAGAGTTATCGTTTGTTTTGGTGCGTGCACGGTTAGAGCAGGACGGTCACGAAGGAGCACGGTA CTAAAATGACAAGTGCAAATTAGGTAAATAAATATAAAAACCAACCTCCCGGGTGCGATTGTAAGTGATAACTACTACTACTACTACTATATGGAACCGATACACAGCTCCAAACTGTGCGGAAAGTGTGAGGGTAGGCCTATTTCCACAAACAAGTGAAATGCCTGTCCAAGACAGC GGTGCTTGATGTGGGACTTTGCGTGTTGTTAGGCTATGCTATAACAAGGGAGCGAAAATACCACAAGGATTATTAAACCTAACCCCATGGAATACACAGTAGCGCAGAGTAGATTCCTCTCCGACAGATTATACATCTCACAAGCATCGCTG                                                                  ]
[+] EMBL BX621073             [                                                                                                                                                                              GACTAAACGATAAGAAGTA ATCGTTTTCCAAACCATGTGTAGTAGGGACGGAAAACTGTCGAGAATTGTTAGCAGCTTCGTGGAAATGGAGCACTTGAAACTAGGCTCTTTACTCTCATTTCTTACCTAAACAGCCACACCAGTTCTGTAGCATTGCAATAGATTTTAGAGTTATCGTTTGTTTTGGTGCGTGCACGGTTAGAGCAGGACGGTCACGAAGGAGCACGGTA CTAAAATGACAAGTGCAAATTAGGTAAATAAATATAAAAACCAACCTCCCGGGTGCGATTGTAAGTGATAACTACTACTACTACTACTATATGGAACCGATACACAGCTCCAAACTGTGCGGAAAGTGTGAGGGTAGGCCTATTTCCACAAACAAGTGAAATGCCTGTCCAAGACAGC GGTGCTTGATGTGGGACTTTGCGTGTTGTTAGGCTATGCTATAACAAGGGAGCGAAAATACCACAAGGATTATTAAACCTAACCCCATGGAATACACAGTAGCGCAGAGTAGATTCCTCTCCGACAGATTATACATCTCACAAGCATCGCTGCATGATTGTTGAAAAGAAGAAAAAAAAAACAAAACAAGCAAAAACACACNGTTAAACNTGAAGAGT]
[+] EMBL BX626448             [                                                                                                                                                                                     CGATAAGAAGTANTT GTTTTCCAAACCATGTGTAGTAGGGACGGAAAACTGTCGAGAATTGTTAGCAGCTTCGTGGAAATGGAGCACTTGAAACTAGGCTCTTTACTCTCATTTCTTACCTAAACAGCCACACCAGTTCTGTAGCATTGCAATAGATTTTAGAGTTATCGTTTGTTTTGGTGCGTGCACGGTTAGAGCAGGACGGTCACGAAGGAGCACGGTA CTAAAATGACAAGTGCAAATTAGGTAAATAAATATAAAAACCAACCTCCCGGGTGCGATTGTAAGTGATAACTACTACTACTACTACTATATGGAACCGATACACAGCTCCAAACTGTGCGGAAAGTGTGAGGGTAGGCCTATTTCCACAAACAAGTGAAATGCCTGTCCAAGACAGC GGTGCTTGATGTGGGACTTTGCGTGTTGTTAGGCTATGCTATAACAAGGGAGCGAAAATACCACAAGGATTATTAAACCTAACCCCATGGAATACACAGTAGCGCAGAGTAGATTCCTCTCCGACAGATTATACATCTCACAAGCATCGCTGCATGATTGTT                                                        ]




>consensus_6248#0
CCGCCCACGCGTCCGGTATTCTTTTCATAACAAAAAAAAAAGAACCGCATCGCCTTGTGC
GATGGGTGTCCCAAAAAATCTCATAAAACTTCAATCGAAGTCGAAGAAGCGTCGTGGTGT
AACGAAACTGGGGATTTGGGGCGAACAGTTGACGACAAATTGCGTCCCAGTGGAGACTAA
ACGATAAGAAGTAATGTTTTCCAAACCATGTGTAGTAGGGACGGAAAACTGTCGAGAATT
GTTAGCAGCTTCGTGGAAATGGAGCACTTGAAACTAGGCTCTTTACTCTCATTTCTTACC
TAAACAGCCACACCAGTTCTGTAGCATTGCAATAGATTTTAGAGTTATCGTTTGTTTTGG
TGCGTGCACGGTTAGAGCAGGACGGTCACGAAGGAGCACGGTACTAAAATGACAAGTGCA
AATTAGGTAAATAAATATAAAAACCAACCTCCCGGGTGCGATTGTAAGTGATAACTACTA
CTACTACTACTATATGGAACCGATACACAGCTCCAAACTGTGCGGAAAGTGTGAGGGTAG
GCCTATTTCCACAAACAAGTGAAATGCCTGTCCAAGACAGCGGTGCTTGATGTGGGACTT
TGCGTGTTGTTAGGCTATGCTATAACAAGGGAGCGAAAATACCACAAGGATTATTAAACC
TAACCCCATGGAATACACAGTAGCGCAGAGTAGATTCCTCTCCGACAGATTATACATCTC
ACAAGCATCGCTGCATGATTGTTGAAAAGAAGAAAAAAAAAACAAAACAAGCAAAAACAC
ACNGTTAAACNTGAAGAGT

consensusID : consensus_6248#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 506
fasta sequence

                              [GGCCAAGAATCCCGCACGAGTGAGCACTTGAAACTAGGCTCTTNCACTCTCATTTCTTACCTAAACAGGCCACACCAGTTCTGTAGCATTGCAATAGATTTTAGAGTTATCGTTTGTTTTGGTGCGTGCACGGTTAGAGCAGGACGGTCACGAAGGAGCACGGTACTAAAATGACAAGTGCAAATTAGGTAAATAAATATAAAAACCAACCTCCCGGGTGCGATTGTAAGTGATAACTACTACTACTACTACTATATGGAACCGATACACAGCTCCAAACTGTGCGGAAAGTGTGAGGGTAGGCCTATTTCCACAAACAAGTGAAATGCCTGTCCAAGACAGCGGTGCTTGATGTGGGACTTTGCGTGTTGTTAGGCTATGCTATAACAAGGGAGCGAAAATACCACAAGGATTATTAAACCTAACCCCGATGGAATACACAGTAGCGCAGAGTAGATTCCTCGTCCGACAGATTATACATCTCACAAGCATCGCGTGCATGATTG]

[+] EMBL BX468245             [GGCCAAGAATCCCGCACGAGTGAGCACTTGAAACTAGGCTCTTNCACTCTCATTTCTTACCTAAACAGGCCACACCAGTTCTGTAGCATTGCAATAGATTTTAGAGTTATCGTTTGTTTTGGTGCGTGCACGGTTAGAGCAGGACGGTCACGAAGGAGCACGGTACTAAAATGACAAGTGCAAATTAGGTAAATAAATATAAAAACCAACCTCCCGGGTGCGATTGTAAGTGATAACTACTACTACTACTACTATATGGAACCGATACACAGCTCCAAACTGTGCGGAAAGTGTGAGGGTAGGCCTATTTCCACAAACAAGTGAAATGCCTGTCCAAGACAGCGGTGCTTGATGTGGGACTTTGCGTGTTGTTAGGCTATGCTATAACAAGGGAGCGAAAATACCACAAGGATTATTAAACCTAACCCCGATGGAATACACAGTAGCGCAGAGTAGATTCCTCGTCCGACAGATTATACATCTCACAAGCATCGCGTGCATGATTG]




>consensus_6248#1
GGCCAAGAATCCCGCACGAGTGAGCACTTGAAACTAGGCTCTTNCACTCTCATTTCTTAC
CTAAACAGGCCACACCAGTTCTGTAGCATTGCAATAGATTTTAGAGTTATCGTTTGTTTT
GGTGCGTGCACGGTTAGAGCAGGACGGTCACGAAGGAGCACGGTACTAAAATGACAAGTG
CAAATTAGGTAAATAAATATAAAAACCAACCTCCCGGGTGCGATTGTAAGTGATAACTAC
TACTACTACTACTATATGGAACCGATACACAGCTCCAAACTGTGCGGAAAGTGTGAGGGT
AGGCCTATTTCCACAAACAAGTGAAATGCCTGTCCAAGACAGCGGTGCTTGATGTGGGAC
TTTGCGTGTTGTTAGGCTATGCTATAACAAGGGAGCGAAAATACCACAAGGATTATTAAA
CCTAACCCCGATGGAATACACAGTAGCGCAGAGTAGATTCCTCGTCCGACAGATTATACA
TCTCACAAGCATCGCGTGCATGATTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6248#0      CCGCCCACGCGTCCGGTATTCTTTTCATAACAAAAAAAAAAGAACCGCATCGCCTTGTGC 60
consensus_6248#1      ------------------------------------------------------------
                                                                                  

consensus_6248#0      GATGGGTGTCCCAAAAAATCTCATAAAACTTCAATCGAAGTCGAAGAAGCGTCGTGGTGT 120
consensus_6248#1      ------------------------------------------------------------
                                                                                  

consensus_6248#0      AACGAAACTGGGGATTTGGGGCGAACAGTTGACGACAAATTGCGTCCCAGTGGAGACTAA 180
consensus_6248#1      ------------------------------------------------------------
                                                                                  

consensus_6248#0      ACGATAAGAAGTAATGTTTTCCAAACCATGTGTAGTAGGGACGGAAAACTGTCGAGAATT 240
consensus_6248#1      -----------------------------------------------------------G 1
                                                                                  

consensus_6248#0      GTTAGCAGCTTCGTGGAAATGGAGCACTTGAAACTAGGCTCTTT-ACTCTCATTTCTTAC 299
consensus_6248#1      GCCAAGAATCCCGCACGAGTG-AGCACTTGAAACTAGGCTCTTNCACTCTCATTTCTTAC 60
                      *  *  *    **    * ** *********************  ***************

consensus_6248#0      CTAAACAG-CCACACCAGTTCTGTAGCATTGCAATAGATTTTAGAGTTATCGTTTGTTTT 358
consensus_6248#1      CTAAACAGGCCACACCAGTTCTGTAGCATTGCAATAGATTTTAGAGTTATCGTTTGTTTT 120
                      ******** ***************************************************

consensus_6248#0      GGTGCGTGCACGGTTAGAGCAGGACGGTCACGAAGGAGCACGGTACTAAAATGACAAGTG 418
consensus_6248#1      GGTGCGTGCACGGTTAGAGCAGGACGGTCACGAAGGAGCACGGTACTAAAATGACAAGTG 180
                      ************************************************************

consensus_6248#0      CAAATTAGGTAAATAAATATAAAAACCAACCTCCCGGGTGCGATTGTAAGTGATAACTAC 478
consensus_6248#1      CAAATTAGGTAAATAAATATAAAAACCAACCTCCCGGGTGCGATTGTAAGTGATAACTAC 240
                      ************************************************************

consensus_6248#0      TACTACTACTACTATATGGAACCGATACACAGCTCCAAACTGTGCGGAAAGTGTGAGGGT 538
consensus_6248#1      TACTACTACTACTATATGGAACCGATACACAGCTCCAAACTGTGCGGAAAGTGTGAGGGT 300
                      ************************************************************

consensus_6248#0      AGGCCTATTTCCACAAACAAGTGAAATGCCTGTCCAAGACAGCGGTGCTTGATGTGGGAC 598
consensus_6248#1      AGGCCTATTTCCACAAACAAGTGAAATGCCTGTCCAAGACAGCGGTGCTTGATGTGGGAC 360
                      ************************************************************

consensus_6248#0      TTTGCGTGTTGTTAGGCTATGCTATAACAAGGGAGCGAAAATACCACAAGGATTATTAAA 658
consensus_6248#1      TTTGCGTGTTGTTAGGCTATGCTATAACAAGGGAGCGAAAATACCACAAGGATTATTAAA 420
                      ************************************************************

consensus_6248#0      CCTAACCCC-ATGGAATACACAGTAGCGCAGAGTAGATTCCTC-TCCGACAGATTATACA 716
consensus_6248#1      CCTAACCCCGATGGAATACACAGTAGCGCAGAGTAGATTCCTCGTCCGACAGATTATACA 480
                      ********* ********************************* ****************

consensus_6248#0      TCTCACAAGCATCGC-TGCATGATTGTTGAAAAGAAGAAAAAAAAAACAAAACAAGCAAA 775
consensus_6248#1      TCTCACAAGCATCGCGTGCATGATTG---------------------------------- 506
                      *************** **********                                  

consensus_6248#0      AACACACNGTTAAACNTGAAGAGT 799
consensus_6248#1      ------------------------