These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6249#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1255 fasta sequence [GCCCGCTGCAATGTGGTGTCACATACACACACACGCGCACTCACACGGGCAACCTAATTTGTTGTCGATTGGTTAGGGATGAAAGCGTGTTTTAATTTGATTACGGTTGGAACGGAAAAGGAAAAAGGTTCAAAGATCCCATGGGCAGTATGGGAATTGCAATTATCCTCCTCATGGTCCAAAGATCGAGTGAGTTTTAATACAAACATAAACGCTTTCCGGCGTCTCTCAGAGAGTGAAAGAGTGAGAGAGAAATAGAGCGAAAGAGAGGGGCTCCCGTCCCCGTGTGGTGCGTGTTTTTTTGTAAAAAAAGAAGCAAAGAGATGGAGGCCGAGTAAAGGGATCGTTTCCATCGCGAAAAAGTACTGTTTTGTGGACGTTTCAAAACGCAAAAAGCGCACCCTGGCGAGAGCGCCCCACCCACAATCGAACGGGAAAACAGATTTTGCAAAAGAGATTACTTTTAGAGATTTAGACCAAAACCAGACGTTAAAGCAAAACAAAAAACATTAAATCAATGTGCCATCGTACAGGAGGAAAAGAAAAAGGCACCATAAATGTGAACACTCCAAAGAGACACACACACACACACGTCCTCGTTTTGCCTCTATCACCCATTTTTATCTTCATCACCCTTTTACTTTTGTGTATATGTGTACATGTTGTTTCGAGAAGTCACGAATTTGTATTAAATTATTATTATTATATATTTTATTTTGCTCTTATATATCCGTAACCAAACGGACGCGCGTTGAATTGTAGTTCGTATCAAGGGAAGGGAAAGGATAATAGGAAAATATGGCTGAATAGGAAGAAGAAAGGAAGGTATTCAAATGTTGGCGAAAATGGGGGAAAAATTGCGAATTGTTATTTTGATTTGTTGTTTATTTACACAGTTTGTTTGTTTGTTTTACATGCTGATCTCGTTTGGCACGGTGTAACTCTGTCATGTAAAAAGTCGATTACATATATGCACACATTTACACTGTTTGAACAAAAGTTTTACTATCCATTCGCATCGTCCTTTTCTAGCACCCGTGCGCCCGTATATTTTTGTATAGTATAGCACACATTTGCAGACACTTTTGTGATAGACACGTGTCAGCCCCGGCTCTCCACATGGTTTTGTAACGTTCACCCCATCTTGGCACTTGGCACTAGTCGGAAAACAGGTGGCAGTGAGAGGGGCGGCGGGCAGGAGAGGATCGGCAAACGTGGTAAAGATAGTATTGCAGAGGCACAGCATAGTAGGCAC] [+] EMBL BX625432 [GCCCGCTGCAATGTGGTGTCACATACACACACACGCGCACTCACACGGGCAACCTAATTTGTTGTCGATTGGTTAGGGATGAAAGCGTGTTTTAATTTGATTACGGTTGGAACGGAAAAGGAAAAAGGTTCAAAGATCCCATGGGCAGTATGGGAATTGCAATTATCCTCCTCATGGTCCAAAGATCGAGTGAGTTTTAATACAAACATAAACGCTTTCCGGCGTCTCTCAGAGAGTGAAAGAGTGAGAGAGAAATAGAGCGAAAGAGAGGGGCTCCCGTCCCCGTGTGGTGCGTGTTTTTTTGTAAAAAAAGAAGCAAAGAGATGGAGGCCGAGTAAAGGGATCGTTTCCATCGCGAAAAAGTACTGTTTTGTGGACGTTTCAAAACGCAAAAAGCGCACCCTGGCGAGAGCGCCCCACCCACAATCGAACGGGAAAACAGATTTTGCAAAAGAGATTACTTTTAGAGATTTAGACCAAAACCAGACGTTAAAGCAAAACAAAAAACATTAAATCAATGTGCCATCGTACAGGAGGAAAAGAAAAAGGCACCATAAATGTGAACACTCCAAAG ] [+] EMBL BX616041 [ GACGTTAAAGCAAAACAAAAAACATTAAATCAATGTGCCATCGTACAGGAGGAAAAGAAAAAGGCACCATAAATGTGAACACTCCAAAGAGACACACACACACACACGTCCTCGTTTTGCCTCTATCACCCATTTTTATCTTCATCACCCTTTTACTTTTGTGTATATGTGTACATGTTGTTTCGAGAAGTCACGAATTTGTATTAAATTATTATTATTATATATTTTATTTTGCTCTTATATATCCGTAACCAAACGGACGCGCGTTGAATTGTAGTTCGTATCAAGGGAAGGGAAAGGATAATAGGAAAATATGGCTGAATAGGAAGAAGAAAGGAAGGTATTCAAATGTTGGCGAAAATGGGGGAAAAATTGCGAATTGTTATTTTGATTTGTTGTTTATTTACACAGTTTGTTTGTTTGTTTTACATGCTGATCTCGTTTGGCACGGTGTAACTCTGTCATGTAAAAAGTCGATTACATATATGCACACATTTACA ] [+] EMBL BX618243 [ AGAGACACACACACACACACGTCCTCCTTTTGCCTCTATCACCCATTTTTATCTTCATCACCCTTTTACTTTTGTGTATATGTGTACATGTTGGTTCGAGAAGTCACGAATTTGTATTAAATTATTATTATTATATATTTTATTTTGCTCTTATATATCCGTAACCAAACGGACGCGCGTTGAATTGTAGTTCGTATCAAGGGAAGGGAAAGGATAATAGGAAAATATGGCTGAATAGGAAGAAGAAAGGAAGGTATTCAAATGTTGGCGAAAATGGGGGAAAAATTGCGAATTGTTATTTTGATTTGTTGTTTATTTACACAGTTTGTTTGTTTGTTTTACATGCTGATCTCGTTTGGCACGGTGTAACTCTGTCATGTAAAAAGTCGATTACATATATGCACACATTTACACTGTTTGAACAAAAGTTTTACTATCCATTCGCATCGTCCTTTTCTAGCACCCGTGCGCCCGTATATTTTTGTATAGTATAGCACACATTTGCAGACACTTTTGTGATAGACACGTGTCAGCCCCGGCTCTCCACATGGTTTTGTAACGTTCACCCCATCTTGGCACTTGGCACTAGTCGGAAAACAGGTGGCAGTGAGAGGGGCGGCGGGCAGGAGAGGATCGGCAAACGTGGTAAAGATAGTATTGCAGAGGCACAGCATAGTAGGCAC] [-] EMBL BM613429 [ ccTTGATTTGTTGTTTATTTACACAGTTTGTTTGTTTGTTTTACATGCTGATCTCGTTTGGCACGGTGTAACTCTGTCATGTAAAAAGTCGATTACATATATGCACACATTTACACCGTTTGAACAAAAGTTTTACTATCCATTCGCATCGTCCTTTTCTAGCACCCGTGCGCCAGTATATTTTTGTATAGTATAGCACACATT ] consensusID : consensus_6249#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 143 fasta sequence [CACATCCGCAGACACTGGGGGGAAAGACACGGGGCAGCCCCGGCCCCCCACACGGTGGGGGAACGGTCACCCCATCTGGGCACTGGGCACTAGTCGGAAAACAGGGGGCAGCGAGAGGGGCGGCGGGCAGGAGAGGACCGGCA] [+] EMBL BX618562 [CACATCCGCAGACACTGGGGGGAAAGACACGGGGCAGCCCCGGCCCCCCACACGGTGGGGGAACGGTCACCCCATCTGGGCACTGGGCACTAGTCGGAAAACAGGGGGCAGCGAGAGGGGCGGCGGGCAGGAGAGGACCGGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6249#0 GCCCGCTGCAATGTGGTGTCACATACACACACACGCGCACTCACACGGGCAACCTAATTT 60 consensus_6249#1 ------------------------------------------------------------ consensus_6249#0 GTTGTCGATTGGTTAGGGATGAAAGCGTGTTTTAATTTGATTACGGTTGGAACGGAAAAG 120 consensus_6249#1 ------------------------------------------------------------ consensus_6249#0 GAAAAAGGTTCAAAGATCCCATGGGCAGTATGGGAATTGCAATTATCCTCCTCATGGTCC 180 consensus_6249#1 ------------------------------------------------------------ consensus_6249#0 AAAGATCGAGTGAGTTTTAATACAAACATAAACGCTTTCCGGCGTCTCTCAGAGAGTGAA 240 consensus_6249#1 ------------------------------------------------------------ consensus_6249#0 AGAGTGAGAGAGAAATAGAGCGAAAGAGAGGGGCTCCCGTCCCCGTGTGGTGCGTGTTTT 300 consensus_6249#1 ------------------------------------------------------------ consensus_6249#0 TTTGTAAAAAAAGAAGCAAAGAGATGGAGGCCGAGTAAAGGGATCGTTTCCATCGCGAAA 360 consensus_6249#1 ------------------------------------------------------------ consensus_6249#0 AAGTACTGTTTTGTGGACGTTTCAAAACGCAAAAAGCGCACCCTGGCGAGAGCGCCCCAC 420 consensus_6249#1 ------------------------------------------------------------ consensus_6249#0 CCACAATCGAACGGGAAAACAGATTTTGCAAAAGAGATTACTTTTAGAGATTTAGACCAA 480 consensus_6249#1 ------------------------------------------------------------ consensus_6249#0 AACCAGACGTTAAAGCAAAACAAAAAACATTAAATCAATGTGCCATCGTACAGGAGGAAA 540 consensus_6249#1 ------------------------------------------------------------ consensus_6249#0 AGAAAAAGGCACCATAAATGTGAACACTCCAAAGAGACACACACACACACACGTCCTCGT 600 consensus_6249#1 ------------------------------------------------------------ consensus_6249#0 TTTGCCTCTATCACCCATTTTTATCTTCATCACCCTTTTACTTTTGTGTATATGTGTACA 660 consensus_6249#1 ------------------------------------------------------------ consensus_6249#0 TGTTGTTTCGAGAAGTCACGAATTTGTATTAAATTATTATTATTATATATTTTATTTTGC 720 consensus_6249#1 ------------------------------------------------------------ consensus_6249#0 TCTTATATATCCGTAACCAAACGGACGCGCGTTGAATTGTAGTTCGTATCAAGGGAAGGG 780 consensus_6249#1 ------------------------------------------------------------ consensus_6249#0 AAAGGATAATAGGAAAATATGGCTGAATAGGAAGAAGAAAGGAAGGTATTCAAATGTTGG 840 consensus_6249#1 ------------------------------------------------------------ consensus_6249#0 CGAAAATGGGGGAAAAATTGCGAATTGTTATTTTGATTTGTTGTTTATTTACACAGTTTG 900 consensus_6249#1 ------------------------------------------------------------ consensus_6249#0 TTTGTTTGTTTTACATGCTGATCTCGTTTGGCACGGTGTAACTCTGTCATGTAAAAAGTC 960 consensus_6249#1 ------------------------------------------------------------ consensus_6249#0 GATTACATATATGCACACATTTACACTGTTTGAACAAAAGTTTTACTATCCATTCGCATC 1020 consensus_6249#1 ------------------------------------------------------------ consensus_6249#0 GTCCTTTTCTAGCACCCGTGCGCCCGTATATTTTTGTATAGTATAGCACACATTTGCAGA 1080 consensus_6249#1 ------------------------------------------------CACATCCGCAGA 12 ***** ***** consensus_6249#0 CACTTTTGTGATAGACACGTGTCAGCCCCGGCTCTCCACATGGTTTTGTAACGTTCACCC 1140 consensus_6249#1 CACTGGGGGGAAAGACACGGGGCAGCCCCGGCCCCCCACACGGTGGGGGAACGGTCACCC 72 **** * ** ******* * ********** * ***** *** * **** ****** consensus_6249#0 CATCTTGGCACTTGGCACTAGTCGGAAAACAGGTGGCAGTGAGAGGGGCGGCGGGCAGGA 1200 consensus_6249#1 CATCTGGGCACTGGGCACTAGTCGGAAAACAGGGGGCAGCGAGAGGGGCGGCGGGCAGGA 132 ***** ****** ******************** ***** ******************** consensus_6249#0 GAGGATCGGCAAACGTGGTAAAGATAGTATTGCAGAGGCACAGCATAGTAGGCAC 1255 consensus_6249#1 GAGGACCGGCA-------------------------------------------- 143 ***** ***** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||