These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6250#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 942 fasta sequence [CCGGGCGTTTTGGGGGTGGATACACCACCCATCCTCGAGGGCTGCACGTATTTTGTTTTCCAACCGCACAAATAAAGATTGCGAGATTGCGACCGTGTTTGCCAACGATGAAGTAGACCGTGGGTGTGTATGTGAGTGTATGTAAAAGAGAGAAAAAGAGATAG--AGAGAGACAGAGAG--GACTGGTAACAGAATCCAGCTAGGCCAAAGGGGCTCCGCCAGCGTTGTGTTGTTGTTTGTGAAACAGTCTGCCAAAAAGGTGCAACAAACACTTGCCAGCAGCAGTAGCAGCAAGATGCGGACGGCGCTCGTGTACTACGTGTGTTTCGGTGCGATCTTGCTGGCCCGGGGCAGTGGAAGCGGGGCGCCACCACAGCACCCCGACGCCCCGAATGTGAACGTCACCGTGGCGAAGGTGATCGGTGCGATGCTGGCGGACGGTGGTGAGCGGGACAACGGGACGGTCAGCGCCCAGCAGGAGCACCACGCCGACCGGGGCCAGCGGATAG-TGGCGCGGAAGGGCGTGAGCAACGATGTGGTCGTCCCGGT-GAGGAGCGCCGTCCCGGAGCACCCATCAACAGTCGGTGCGTCC-GGGAACAGCACGGCCCACACACAGGCAAACGCAACGACCGGCACGACGCTGCACGAGTCCACGTCTTCCTCCGGCGCGCACGGTTCCACCCTACCTGCAATCACCAGTGCAAACGCGTCCTCAACCGCACCGAGCTCAGCAACGTCGACGTCAGCGGTACAGCCGCCACCACAATCAAGGCCGCCCACCAGTGCCAACGCAACAACGACCCAGCGAACGGTCGCGGCTAGCAGCACCAGTAGCAGCAGCACAACCACCACCACCACCACCACATCAACCACAACGACTACAACGACAAGTACCACCACGACCACCACCACCACCACCACCAAACCTCCGAAGAAGCCAAAGA] [+] EMBL BM592848 [CCGGGCGTTTTGGGGGTGGATACACCACCCATCCTCGAGGGCTGCACGTATTTTGTTTTCCAACCGCACAAATAAAGATTGCGAGATTGCGACCGTGTTTGCCAACGATGAAGTAGACCGTGGGTGTGTATGTGAGTGTATGTAAAAGAGAGAAAAAGAGATAG AGAGAGACAGAGAG GACTGGTAACAGAATCCAGCTAGGCCAAAGGGGCTCCGCCAGCGTTGTGTTGTTGTTTGTGAAACAGTCTGCCAAAAAGGTGCAACAAACGCTTGCCAGCACCAGTAGCAGCAAGATGCGGACGGCGCTCGTGTACTACGTGTGTTTCGGTGCGATCTTGCTGGCCCGGGGCAGTGGAAGCGGGGCGCCACCACAGCACCCCGACGCCCCGAATGTGAACGTCACCGTGGCGAAGGTGATCGGTGCGATGCTGGCGGACGGTGGTGAGCGGGACAACGGGACGGTCAGCGCCCAGCAGGAGCACCACGCCGACCGGGGCCAGCGGATAGTTGGCGCGGAAGGGCGTGAGCAACGATGTGGTCGTCCCGGTGGAGGAGCGCCGTCCCGGAGCACCCATCAACAGTCGGTGCGTCCGGGGAACAGCACGGCCCACACACAGGCAAACGCAACGACCGGCACGACGCTGCACGAGTCCACGTCTTCCTCCGGCGCGCACGGGTC ] [+] EMBL BM579350 [ ccGGCGTTTTGGGGGTGGATACACCACCCATCCTCGAGGGCTGCACGTATTTTGTTTTCCAACCGCACAAATAAAGATTGCGAGATTGCGACCGTGTTTGCCAACGATGAAGTAGACTGTAGGTGTGTATGTGAGTGTATGTAAAAGAGAGAAAAAGAGATAGATAGAGAGAGAGAGAGACGACTGGTAACAGAATCCAGCTAGGCCAAAGGGGCTCCGCCAGCGTTGTGTTGTTGTTTGTGAAACAGTCTGCCAAAAAGGTGCAACAAACACTTGCCAGCAGCAGTAGCAGCAAGATGCGGACGGCGCTCGTGTACTACGTGTGTTTCGGTGCGATCTTGCTGGCCCGGGGCAGTGGAAGCGGGGCGCCACCACAGCACCCCGACGCCCCGAATGTGAACGTCACCGTGGCGAAGGTGATCGGTGCGATGCTGGCGGACGGTGGTGAGCGGGACAACGGGACGGTCAGCGCCCAGCAGGAGCACCACGCCGACCGGGGCCAGCGGATAG TGGCGCGGAAGGGCGTGAGCAACGATGTGGTCGTCCCGGT GAGGAGCGCCGTCCCGGAGCACCCATCAACAGTCGGTGCGTCC GGGAACAGCACG ] [+] EMBL BM619159 [ ccgCAAACACTTGCCAGCAGCAGTAGCAGCAAGATGCGGACGGCGCTCGTGTACTACGTGTGTTTCGGTGCGATCTTGCTGGCCCGGGGCAGTGGAAGCGGGGCGCCACCACAGCACCCCGACGCCCCGAATGTGAACGTCACCGTGGCGAAGGTGATCGGTGCGATGCTGGCGGACGGTGGTGAGCGGGACAACGGGACGGTCAGCGCCCAGCAGGAGCACCACGCCGACCGGGGCCAGCGGATAG TGGCGCGGAAGGGCGTGAGCAACGATGTGGTCGTCCCGGT GAGGAGCGCCGTCCCGGAGCACCCATCAACAGTCGGTGCGTCC GGGAACAGCACGGCCCACACACAGGCAAACGCAACGACCGGCACGACGCTGCACGAGTCCACGTCTTCCTCCGGCGCGCACGGTTCCACCCTACCTGCAATCACCAGTGCAAACGCGTCCTCAACCGCACCGAGCTCAGCAACGTCGACGTCAGCGGTACAGCCGCCACCACAATCAAGGCCGCCCACCAGTGCCAACGCAACAACG ] [+] EMBL BM604239 [ ccgAGCAGCAGTAGCAGCAAGATGCGGACGGCGCTCGTGTACTACGTGTGTTTCGGTGCGATCTTGCTGGCCCGGGGCAGTGGAAGCGGGGCGCCACCACAGCACCCCGACGCCCCGAATGTGAACGTCACCGTGGCGAAGGTGATCGGTGCGATGCTGGCGGACGGTGGTGAGCGGGACAACGGGACGGTCAGCGCCCAGCAGGAG CACGCCGACCGGGGCCAGCGGATAG TGGCGCGGAAGGGCGTGAGCAACGATGTGGTCGTCCCGGT GAGGGGCGCCGTCCCGGAGCACCCATCAACAGTCGGTGCGTCC GGGAACAGCACGGCCCACACACAGGCAAACGCAACGACCGGCACGACACTGCACGAGTCCACGTCTTCCTCCGGCGCGTACGGTTCCACCCTACCTGCAATCACCAGTGCAAACGCGTCCTCAACCGCACCGAGCTCAGCAACGTCGACGTCAGCGGTACAGCCGCCACCACAATCAAGGCCGCCCACCAGTGCCAACGCAACAACGACCCAGCGAACGGTCGCGGCTAGCAGCACCAGTAGCAGCAGCACAACCACCACCACCACCACCACATCAACCACAACGACTACAACGACAAGTACCACCACGACCACCACCACCACCACCACCAAACCTCCGAAGAAGCCAAAGA] consensusID : consensus_6250#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 632 fasta sequence [CCGCGTTTTGGGGGTGGATACACCACCCATCCTCGAGGGCTGCACGTATTTTGTTTTCCAAGTAAGGTGAGCGAGTGGGCGGACAGGAAAGGGGAGGGAGTAGAGAAAAGGCAAAGAAACTAATCCATCCATTCGCTCGATTCGCCCCACCAACAGCCGCACAAATAAAGATTGCGAGATTGCGACCGTGTTTGCCAACGATGAAGTAGACTGTGTGTGTATGTGAGTGTATGTAAAAGAGAGAAAAAGAGATAGATAGAGAGAGAGAGAGAGGACTGGTAACAGAATCCAGCTAGGCCAAAGGGGCTCCGCCAGCGTTGTGTTGTTGTTTGTGAAACAGTCTGCCAAAAAGGTGCAACAAACATTTGCCAGCAGCAGTAGCAGCAAGATGCGGACGGCGCTCGTGTACTACGTGTGTTTCGGTGCGATCTTGCTGGCCCGGGGCAGTGGAAGCGGGGCGCCACCACAGCATCCCGACGCGCCGAATGTGAACGTCACCGTGGCGAAGGTGATCGGTGCGATGCTGGCGGACGGTGGTGAGCGGGACAACGGGACGGTCAGCGCCCAGCAGGAGCACCACGCCGACCGGGGCCAGCGGATAGTGGCGCGGAAGGGCGTGAGCAACGATGTGG] [+] EMBL BM611019 [CCGCGTTTTGGGGGTGGATACACCACCCATCCTCGAGGGCTGCACGTATTTTGTTTTCCAAGTAAGGTGAGCGAGTGGGCGGACAGGAAAGGGGAGGGAGTAGAGAAAAGGCAAAGAAACTAATCCATCCATTCGCTCGATTCGCCCCACCAACAGCCGCACAAATAAAGATTGCGAGATTGCGACCGTGTTTGCCAACGATGAAGTAGACTGTGTGTGTATGTGAGTGTATGTAAAAGAGAGAAAAAGAGATAGATAGAGAGAGAGAGAGAGGACTGGTAACAGAATCCAGCTAGGCCAAAGGGGCTCCGCCAGCGTTGTGTTGTTGTTTGTGAAACAGTCTGCCAAAAAGGTGCAACAAACATTTGCCAGCAGCAGTAGCAGCAAGATGCGGACGGCGCTCGTGTACTACGTGTGTTTCGGTGCGATCTTGCTGGCCCGGGGCAGTGGAAGCGGGGCGCCACCACAGCATCCCGACGCGCCGAATGTGAACGTCACCGTGGCGAAGGTGATCGGTGCGATGCTGGCGGACGGTGGTGAGCGGGACAACGGGACGGTCAGCGCCCAGCAGGAGCACCACGCCGACCGGGGCCAGCGGATAGTGGCGCGGAAGGGCGTGAGCAACGATGTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6250#0 ------------------------------------------------------------ consensus_6250#1 CCGCGTTTTGGGGGTGGATACACCACCCATCCTCGAGGGCTGCACGTATTTTGTTTTCCA 60 consensus_6250#0 -------------------------------CCGGGCGTTTTGGGGGTGGATACACCACC 29 consensus_6250#1 AGTAAGGTGAGCGAGTGGGCGGACAGGAAAGGGGAGGGAGTAGAGAAAAGGCAAAGAAAC 120 * * * * * * * * * * * consensus_6250#0 CATCCTCGAGGGCTGCACGTATTTTGTTTTC--CAACCGCACAAATAAAGATTGCGAGAT 87 consensus_6250#1 TAATCCATCCATTCGCTCGATTCGCCCCACCAACAGCCGCACAAATAAAGATTGCGAGAT 180 * * ** ** * * ** ************************ consensus_6250#0 TGCGACCGTGTTTGCCAACGATGAAGTAGACCGTGGGTGTGTATGTGAGTGTATGTAAAA 147 consensus_6250#1 TGCGACCGTGTTTGCCAACGATGAAGTAGACTGTG--TGTGTATGTGAGTGTATGTAAAA 238 ******************************* *** *********************** consensus_6250#0 GAGAGAAAAAGAGATAGA----GAGAGACAGAGAGGACTGGTAACAGAATCCAGCTAGGC 203 consensus_6250#1 GAGAGAAAAAGAGATAGATAGAGAGAGAGAGAGAGGACTGGTAACAGAATCCAGCTAGGC 298 ****************** ****** ******************************* consensus_6250#0 CAAAGGGGCTCCGCCAGCGTTGTGTTGTTGTTTGTGAAACAGTCTGCCAAAAAGGTGCAA 263 consensus_6250#1 CAAAGGGGCTCCGCCAGCGTTGTGTTGTTGTTTGTGAAACAGTCTGCCAAAAAGGTGCAA 358 ************************************************************ consensus_6250#0 CAAACACTTGCCAGCAGCAGTAGCAGCAAGATGCGGACGGCGCTCGTGTACTACGTGTGT 323 consensus_6250#1 CAAACATTTGCCAGCAGCAGTAGCAGCAAGATGCGGACGGCGCTCGTGTACTACGTGTGT 418 ****** ***************************************************** consensus_6250#0 TTCGGTGCGATCTTGCTGGCCCGGGGCAGTGGAAGCGGGGCGCCACCACAGCACCCCGAC 383 consensus_6250#1 TTCGGTGCGATCTTGCTGGCCCGGGGCAGTGGAAGCGGGGCGCCACCACAGCATCCCGAC 478 ***************************************************** ****** consensus_6250#0 GCCCCGAATGTGAACGTCACCGTGGCGAAGGTGATCGGTGCGATGCTGGCGGACGGTGGT 443 consensus_6250#1 GCGCCGAATGTGAACGTCACCGTGGCGAAGGTGATCGGTGCGATGCTGGCGGACGGTGGT 538 ** ********************************************************* consensus_6250#0 GAGCGGGACAACGGGACGGTCAGCGCCCAGCAGGAGCACCACGCCGACCGGGGCCAGCGG 503 consensus_6250#1 GAGCGGGACAACGGGACGGTCAGCGCCCAGCAGGAGCACCACGCCGACCGGGGCCAGCGG 598 ************************************************************ consensus_6250#0 ATAGTGGCGCGGAAGGGCGTGAGCAACGATGTGGTCGTCCCGGTGAGGAGCGCCGTCCCG 563 consensus_6250#1 ATAGTGGCGCGGAAGGGCGTGAGCAACGATGTGG-------------------------- 632 ********************************** consensus_6250#0 GAGCACCCATCAACAGTCGGTGCGTCCGGGAACAGCACGGCCCACACACAGGCAAACGCA 623 consensus_6250#1 ------------------------------------------------------------ consensus_6250#0 ACGACCGGCACGACGCTGCACGAGTCCACGTCTTCCTCCGGCGCGCACGGTTCCACCCTA 683 consensus_6250#1 ------------------------------------------------------------ consensus_6250#0 CCTGCAATCACCAGTGCAAACGCGTCCTCAACCGCACCGAGCTCAGCAACGTCGACGTCA 743 consensus_6250#1 ------------------------------------------------------------ consensus_6250#0 GCGGTACAGCCGCCACCACAATCAAGGCCGCCCACCAGTGCCAACGCAACAACGACCCAG 803 consensus_6250#1 ------------------------------------------------------------ consensus_6250#0 CGAACGGTCGCGGCTAGCAGCACCAGTAGCAGCAGCACAACCACCACCACCACCACCACA 863 consensus_6250#1 ------------------------------------------------------------ consensus_6250#0 TCAACCACAACGACTACAACGACAAGTACCACCACGACCACCACCACCACCACCACCAAA 923 consensus_6250#1 ------------------------------------------------------------ consensus_6250#0 CCTCCGAAGAAGCCAAAGA 942 consensus_6250#1 ------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||