These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6251#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1094 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGCCGCGGCCGGCAAAAGCCTCGGCACGATCGCGCTGATCGATGCCAACATTACCAAGGCGAAGGTGGACGACCTGCAGACGCTGCACACGATACTGTACGAGGGGCCGGCCAAGCCGATGGTGCTGCGGCGCAACCTGCGCAAGTTCGACGGGTTCGAGTTCGGCGCGGACTCGGACGCGTACCGGAAGCGCGTGTCGGCCACGGAAAAGCTGGACGTGAAGAAGCTGGGCCAGCTGGCGGAGATACTGGCGCTGGAGAAGAAGGGCAGCAAGGAGGAGCTAGCCGGGCGGATCTGCACCTTCTTGCTGCGGCCGGACGGCGACGAGGAGCTGCCCGACGACGAGATGGGCGAGGAGGAGGAAGAGGAGGAGGATGAGGAGAACGAGGAGGAGGAGATGAGCGAGGAGGAGGAGGAGGCACCAAAGAAGAAAACGCCGGCAAAGCGTGGCAGTGGTGCGTCGGCTGCAGCACCGGCCGGCCGTGGCAGGGATAACGCCAAGTCGTCCAGCGGCCGTCCGAAGCGATCGACGGCCGGTCGTGGTTACCAAGATTACTCCTCCTCGGAGGAGGAAGAGGAGGAAACCGTCAAGGTGGGCCGCGGCCGTCGTGCCCGTCGAGGATCGGACAGTGGATCGGATTATAATCCCTCGGCCGGGTCAGATTCCGATGCGGGCAAGCGAAGATCGTCCCGCGCACCGACGCGCGGCAGTCGAACCTCGGCACGGAACGTACGCAAGCGGTACAGCGACGACGAATCGGAAGAAAGTCAAAGCGACGACGATTTCAGCGAGGATGATCGACGAAAAAAGAAGACCACACCGGCACGTGGTCGCGGCCGTCCCAGTGCTGCTGCCGTCGCCGCCCGACAGTCGCAGCGGGGCCGGGGCCGCAAGCGAAAAGCAGAAACTGAAAGCGAAGAGGAAGAGTCGGAAGAGGAGGAGGAAGAGGTCGACAGTGAGGACAGTGATCGGCCGAAGCGGAAATCGGTTGCGAAGGCGGGTGGCCGCGCGGCAGCTGCCGTAGCCAACAATAAGAGCAAGAATGCGAGTGCGGCGGCAAAAGGGTG] [+] EMBL BM616074 [CCGCCCACGCGTCCGCCCACGCGTCCGGCCGCGGCCGGCAAAAGCCTCGGCACGATCGCGCTGATCGATGCCAACATTACCAAGGCGAAGGTGGACGACCTGCAGACGCTGCACACGATACTGTACGAGGGGCCGGCCAAGCCGATGGTGCTGCGGCGCAACCTGCGCAAGTTCGACGGGTTCGAGTTCGGCGCGGACTCGGACGCGTACCGGAAGCGCGTGTCGGCCACGGAAAAGCTGGACGTGAAGAAGCTGGGCCAGCTGGCGGAGATACTGGCGCTGGAGAAGAAGGGCAGCAAGGAGGAGCTAGCCGGGCGGATCTGCACCTTCTTGCTGCGGCCGGACGGCGACGAGGAGCTGCCCGACGACGAGATGGGCGAGGAGGAGGAAGAGGAGGAGGATGAGGAGAACGAGGAGGAGGAGATGAGCGAGGAGGAGGAGGAGGCACCAAAGAAGAAAACGCCGGCAAAGCGTGGCAGTGGTGCGTCGGCTGCAGCACCGGCCGGCCGTGGCAGGGATAACGCCAAGTCGTCCAGCGGCCGTCCGAAGCGATCGACGGCCGGTCGTGGTTACCAAGATTACTCCTCCTCGGAGGAGGAAGAGGAGGAAACCGTCAAGGTGGGCCGCGGCCGTCGTGCCCGTCGAGGATCGGACAGT ] [+] EMBL BM612297 [ ccgCGAGGAGGAGGAGATGAGCGAGGAGGAGGAGGAGGCACCAAAGAAGAAAACGCCGGCAAAGCGTGGCAGTGGTGCGTCGGCTGCAGCACCGGCCGGCCGTGGCAGGGATAACGCCAAGTCGTCCAGCGGCCGTCCGAAGCGATCGACGGCCGGTCGTGGTTACCAAGATTACTCCTCCTCAGAGGAGGAAGAAGAGGAAACCGTCAAGGTGGGCCGCGGCCGTCGTGCCCGTCGAGGATCGGACAGTGGATCGGATTATAATCCCTCGGCCGGGTCAGATTCCGATGCGGGCAAGCGAAGATCGTCCCGCGCACCGACGCGCGGCAGTCGAACCTCGGCACGGAACGTACGCAAGCGGTACAGCGACGACGAATCGGAAGAAAGTCAAAGCGACGACGATTTCAGCGAGGATGATCGACGAAAAAAGAAGACCACACCGGCACGTGGTCGCGGCCGTCCCAGTGCTGCTGCCGTCGCCGCCCGACAGTCGCAGCGGGGCCGGGGCCGCAAGCGAAAAGCAGAAACTGAAAGCGAAGAGGAAGAGTCGGAAGAGGAGGAGGAAGAGGTCGACAGTGAGGACAGTGATCGGCCGAAGCGGAAATCGGTTGCGAAGGCGGGTGGCCGCGCGGCAGCTGCCGTAGCCAACAATAAGAGCAAGAATGCGAGTGCGGCGGCAAAAGGGTG] consensusID : consensus_6251#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1023 fasta sequence [CCGGAGGAGGAGGCACCAAAGAAGAAAACGCCGGCAAAGCGTGGCAGTGGTGCGTCGGCTGCAGCACCGGCCGGCCGTGGCAGGGATAACGCCAAGTCGTCCAGCGGCCGTCCGAAGCGATCGACGGCCGGTCGTGGTTACCAAGGTGCGTGTTGGGAGAAGGAGGGGTGGTGGCAGTAAATTTACGTTTCTTCCTTGGAGAGGGAGTCTTTAATCCTTTTTTTAGGTTTAATTTTTTGCGTACTAAACTACTCCTATTAGTACTTTTCCATTATTTAACCCATTTATTTTGAACACGAATTAGTGCATGCGGTCAAGGTTTGCTTTCCGTTTTGTATCTCTCTTTTGGTGTAGCTCAAGTTTTTTGTTTACTTTTACTCTTCCGTTTTCTGCCTTGATAATCACTCTAGACAATTCCTTATACGTAGATTACTCCTCCTCGGAGGAGGAAGAGGAGGAAACCGTCAAGGTGGGCCGCGGCCGTCGTGCCCGTCGAGGATCGGACAGTGGATCGGATTATAATCCCTCGGCCGGGTCAGATTCCGATGCGGGCAAGCGAAGATCGTCCCGCGCACCGACGCGCGGCAGTCGAACCTCGGCACGGAACCTACGCAAGCGGTACAGCGACGACGAATCGGAGGAAAGTCAAAGCGACGACGATTTCAGCGAGGATGATCGACGAAAAAAGAAGACCACACCGGCACGTGGCCGCGGCCGTCCCAGTGCTGCTGCCGTCGCCGCCCGACAGTCGCAGCGGGGCCGGGGCCGCAAGCGAAAAGCAGAAACTGAAAGCGAAGAGGAAGAGTCGGAAGAGGAGGAGGAAGAGGTCGACAGTGAGGACAGTGATCGGCCGAAGCGGAAATCGGTTGCGAAGGCGGGTGGCCGCGCGGCAGCTGCCGTAGCCAACAATAAGAGCAAGAATGCGAGTGCGGCGGCAAAGGGTGGACGAGGACAGCCGAAACGGGCGGCAGCAGTAAGCAGCGCCAAGAAGTCGCGACGGGGCCGTGGACGCAGCTCGTCCGG] [+] EMBL BM651391 [CCGGAGGAGGAGGCACCAAAGAAGAAAACGCCGGCAAAGCGTGGCAGTGGTGCGTCGGCTGCAGCACCGGCCGGCCGTGGCAGGGATAACGCCAAGTCGTCCAGCGGCCGTCCGAAGCGATCGACGGCCGGTCGTGGTTACCAAGGTGCGTGTTGGGAGAAGGAGGGGTGGTGGCAGTAAATTTACGTTTCTTCCTTGGAGAGGGAGTCTTTAATCCTTTTTTTAGGTTTAATTTTTTGCGTACTAAACTACTCCTATTAGTACTTTTCCATTATTTAACCCATTTATTTTGAACACGAATTAGTGCATGCGGTCAAGGTTTGCTTTCCGTTTTGTATCTCTCTTTTGGTGTAGCTCAAGTTTTTTGTTTACTTTTACTCTTCCGTTTTCTGCCTTGATAATCACTCTAGACAATTCCTTATACGTAGATTACTCCTCCTCGGAGGAGGAAGAGGAGGAAACCGTCAAGGTGGGCCGCGGCCGTCGTGCCCGTCGAGGATCGGACAGTGGATCGGATTATAATCCCTCGGCCGGGTCAGATTCCGATGCGGGCAAGCGAAGATCGTCCCGCGCACCGACGCGCGGCAGTCGAACCTCGGCACGGAACCTACGCAAGCGGTACAGCGACGACGAATCGGAGGAAAGTCAAAGCGACGACGATTTCAGCGAGGATGA ] [+] EMBL BM631942 [ ccgCAATTCCTTATACGTAGATTACTCCTCCTCAGAGGAGGAAGAGGAGGAAACCGTCAAGGTGGGCCGCGGCCGTCGTGCCCGTCGAGGATCGGACAGTGGATCGGATTATAATCCCTCGGCCGGGTCAGATTCCGATGCGGGCAAGCGAAGATCGTCCCGCGCACCGACGCGCGGCAGTCGAACCTCGGCACGGAACGTACGCAAGCGGTACAGCGACGACGAATCGGAGGAAAGTCAAAGCGACGACGATTTCAGCGAGGATGATCGACGAAAAAAGAAGACCACACCGGCACGTGGCCGCGGCCGTCCCAGTGCTGCTGCCGTCGCCGCCCGACAGTCGCAGCGGGGCCGGGGCCGCAAGCGAAAAGCAGAAACTGAAAGCGAAGAGGAAGAGTCGGAAGAGGAGGAGGAAGAGGTCGACAGTGAGGACAGTGATCGGCCGAAGCGGAAATCGGTTGCGAAGGCGGGTGGCCGCGCGGCAGCTGCCGTAGCCAACAATAAGAGCAAGAATGCGAGTGCGGCGGCAAAGGGTGGACGAGGACAGCCGAAACGGGCGGCAGCAGTAAGCAGCGCCAAGAAGTCGCGACGGGGCCGTGGACGCAGCTCGTCCGG] consensusID : consensus_6251#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 672 fasta sequence [CCGCTAAAACATGTCGGCAAACGCCGCCGATGAGGAGAAGAAATTAACAAAAATGCCAGAAGAACGTGAGGACGACAAGGGCACCGTGAAGTCGCCGGCGGCACCTGTGGACGGTGGTGCCAACAAAGCCGATGGTACTGGATCCGCCGCCGTCGCAGCCGCTGATAAGAAACCGCCATCGACCGAGCCGGCCGGTGGTGATACAAAAGCGCCACCCAAGAAAGCGGACGAGAAGAGTGGTGAGGAAAAATCGAAACCCGACGGTAAAACCCCGACCACCGACGACGGGGACGCTAGCAAAGCGGACGGTGGCGCACCCGGCCGGGACAATGGCAGCGCAGACAAACCGGCACCGCCGACAAAGGCCGCGCCGGAACCGGCGGACGCCAAGGGCAAGAATGGTCGCAATGGCGCCAAAAAGTCGCCGTCCGATGGCGGTACCGAGGACGGGGCGGACGGTGGGAAGGAACAGGCCGCGGCCGGCAAAAGCCTCGGCACGATCGCGCTGATCGATGCCAACATTACCAAGGCGAAGGTGGACGACCTGCAGACGCTGCACACGATACTGTACGAGGGGCCGGCCAAGCCGATGGTGCTGCGGCGCAACCTGCGCAAGTTCGACGGGTTCGAGTTCGGCGCGGACTCGGACGCGTACCGGAAGCGCGTGTCGGC] [+] EMBL BM608336 [CCGCTAAAACATGTCGGCAAACGCCGCCGATGAGGAGAAGAAATTAACAAAAATGCCAGAAGAACGTGAGGACGACAAGGGCACCGTGAAGTCGCCGGCGGCACCTGTGGACGGTGGTGCCAACAAAGCCGATGGTACTGGATCCGCCGCCGTCGCAGCCGCTGATAAGAAACCGCCATCGACCGAGCCGGCCGGTGGTGATACAAAAGCGCCACCCAAGAAAGCGGACGAGAAGAGTGGTGAGGAAAAATCGAAACCCGACGGTAAAACCCCGACCACCGACGACGGGGACGCTAGCAAAGCGGACGGTGGCGCACCCGGCCGGGACAATGGCAGCGCAGACAAACCGGCACCGCCGACAAAGGCCGCGCCGGAACCGGCGGACGCCAAGGGCAAGAATGGTCGCAATGGCGCCAAAAAGTCGCCGTCCGATGGCGGTACCGAGGACGGGGCGGACGGTGGGAAGGAACAGGCCGCGGCCGGCAAAAGCCTCGGCACGATCGCGCTGATCGATGCCAACATTACCAAGGCGAAGGTGGACGACCTGCAGACGCTGCACACGATACTGTACGAGGGGCCGGCCAAGCCGATGGTGCTGCGGCGCAACCTGCGCAAGTTCGACGGGTTCGAGTTCGGCGCGGACTCGGACGCGTACCGGAAGCGCGTGTCGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6251#0 CCGCCCACGCGTCCGCCCACGCGTCCGGCCGCGGCCGGCAAAAGCCTCGGCACGATCGCG 60 consensus_6251#1 ------------------------------------------------------------ consensus_6251#2 ------------------------------------------------------------ consensus_6251#0 CTGATCGATGCCAACATTACCAAGGCGAAGGTGGACGACCTGCAGACGCTGCACACGATA 120 consensus_6251#1 ------------------------------------------------------------ consensus_6251#2 ------------------------------------------------------------ consensus_6251#0 CTGTACGAGGGGCCGGCCAAGCCGATGGTGCTGCGGCGCAACCTG-CGCAAGTTCGACGG 179 consensus_6251#1 CCGGAGGAGGAGGCACCAAAGAAGAAAACGC--CGGCAAAGCGTGGCAGTGGTGCGTCGG 58 consensus_6251#2 ------------------------------------------------------------ consensus_6251#0 GTTCGAGTTCGGCGCGGACTCGGACGCGTACCG--GAAGCGCGTGTCGGCCA-CGGAAAA 236 consensus_6251#1 CTGCAGCACCGGCCGGCCGTGGCAGGGATAACGCCAAGTCGTCCAGCGGCCGTCCGAAGC 118 consensus_6251#2 ------------------------------------------------------------ consensus_6251#0 GCTGGACGTGAAGAAGCTGGGCCAGCTGGCGGAGATACTGGCGCTGGAGAAGAAGGGCAG 296 consensus_6251#1 GATCGACG-------GCCGGTCGTGGTTACCAAGGTGC--GTGTTGG--GAGAAGGA--- 164 consensus_6251#2 ------------------------------------------------------------ consensus_6251#0 CAAGGAGGAGCTAGCCGGGCGGATCTGCACCTTCTTGCTGCGGCCGGACGGCGACGAGGA 356 consensus_6251#1 ----GGGGTGGTGGC--AGTAAATTTACGTTTCTTCCTTGGAGAGGGA--GTCTTTAATC 216 consensus_6251#2 ---------------------------------------------------CCGCTAAAA 9 * consensus_6251#0 GCTGCCCGACGACGAGATGGGCGAGGAGGAGGAAG-AGGAGGAGGATGAGGAGAACG--A 413 consensus_6251#1 CTTTTTTTAGGTTTAATTTTTTGCGTACTAA-ACT-ACTCCTATTAGTACTTTTCCA--T 272 consensus_6251#2 CATGTCGGCAAACGCCGCCGATGAGGAGAAGAAATTAACAAAAATGCCAGAAGAACGTGA 69 * * * * * * * * * * consensus_6251#0 GGAGGAGGAGATGAGCGAGGAGGAGGAGGAGGCACCAAAGAA-GAAAACGCCGGCAAAGC 472 consensus_6251#1 TATTTAACCCATTTATTTTGAACACGAATTAGTGCATGCGGT-CAAGGTTTGCTTTCCGT 331 consensus_6251#2 GGACGACAAGGGCACCGTGAAGTCGCCGGCGGCACCTGTGGACGGTGGTGCCAACAAAGC 129 * * * * * * consensus_6251#0 GTGGCAGTGGTGCGTCGGCTGCAGCACCGGCCGGCCGTGGCAGG--GATAACG-CCAAGT 529 consensus_6251#1 TTTGTATCTCTCTTTTGG-TGTAGCTCAAGTTTTTTGT----------TTACT-TTTACT 379 consensus_6251#2 -CGATGGTACTGGATCCGCCGCCGTCGCAGCCGCTGATAAGAAACCGCCATCGACCGAGC 188 * * * * * * * * * consensus_6251#0 CGTCCAGCGGCCGTCCGAAGCGATCGAC--GGCCGGTCGTGGTTACCAAGATTACTCCTC 587 consensus_6251#1 CTTCCGTTTTCTGCCTTGA-TAATCACTCTAGACAATTCCTTATACGTAGATTACTCCTC 438 consensus_6251#2 CGGCCGGTGGTGATACAAA---AGCGCCACCCAAGAAAGCGGACGAGAAGAGTGGT---- 241 * ** * * * *** * * consensus_6251#0 CTCGGAGGAGGAAGAGGAGGAAACCGTCAAGGTGGGCCGCGGCCGTCGTGCCCGTCGAGG 647 consensus_6251#1 CTCGGAGGAGGAAGAGGAGGAAACCGTCAAGGTGGGCCGCGGCCGTCGTGCCCGTCGAGG 498 consensus_6251#2 -------GAGGAAAAATCGAAACCCGACGGTA-AAACCCCGACCACCGA---CGACGGGG 290 ****** * * ** *** * ** ** ** ** ** ** ** consensus_6251#0 ATCGGACAGTGGATCGGATTATAATCC-CTCGGCCGGGTCAGATTCCGATGCGGGCAAGC 706 consensus_6251#1 ATCGGACAGTGGATCGGATTATAATCC-CTCGGCCGGGTCAGATTCCGATGCGGGCAAGC 557 consensus_6251#2 AC--GCTAGCAAAGCGGACGGTGGCGCACCCGGCCGGGACA-ATGGCAGCGCAGACAAAC 347 * * ** * **** * * * ******** ** ** * ** * *** * consensus_6251#0 GAAGATCGTCCCGCGCACCGACGCGCGGCAGTCGAACCTCGGCACGGAACGTACGCAAGC 766 consensus_6251#1 GAAGATCGTCCCGCGCACCGACGCGCGGCAGTCGAACCTCGGCACGGAACCTACGCAAGC 617 consensus_6251#2 CGGCACCG--CCGACAAAGGCCGCGCCGGAACCGGCGGACGCCA-AGGGCAAGAATGGTC 404 * ** *** * * ***** * * ** ** ** * * * consensus_6251#0 GGTACAGCGACGACGAATCGGAAGAAAGTCAAAGCGACGACGATTTCAGCGAGGATGATC 826 consensus_6251#1 GGTACAGCGACGACGAATCGGAGGAAAGTCAAAGCGACGACGATTTCAGCGAGGATGATC 677 consensus_6251#2 GCAATGGCGCCAAAAAGTCGCCGTCCGAT---GGCGGTACCGAGGACGGGGCGGACGGTG 461 * * *** * * * *** * *** *** * * * *** * * consensus_6251#0 GACGAAAAAAGAAGACCACACCGGCA----CGTGGTCGCGGCCGTCCCAGT-GCTGCTGC 881 consensus_6251#1 GACGAAAAAAGAAGACCACACCGGCA----CGTGGCCGCGGCCGTCCCAGT-GCTGCTGC 732 consensus_6251#2 G--GAAGGAACAGGCCGCGGCCGGCAAAAGCCTCGGCACGATCGCGCTGATCGATGCCAA 519 * *** ** * * * ****** * * * * ** ** * * * *** consensus_6251#0 CGTCGCCGCC-CGACAGTCGCAGCGGGGCCGGGGCCGCAAGCGAAAA-GCAGAAACTGAA 939 consensus_6251#1 CGTCGCCGCC-CGACAGTCGCAGCGGGGCCGGGGCCGCAAGCGAAAA-GCAGAAACTGAA 790 consensus_6251#2 CATTACCAAGGCGAAGGTGGACGACCTGCAGACGCTGCACACGATACTGTACGAGGGGCC 579 * * ** *** ** * * ** * ** *** *** * * * * * consensus_6251#0 AGCGAAGAGGAAGAGTCGGAAGAGGAGGAGGAAGAGGTCGACAGTGAGGACAGTGATCGG 999 consensus_6251#1 AGCGAAGAGGAAGAGTCGGAAGAGGAGGAGGAAGAGGTCGACAGTGAGGACAGTGATCGG 850 consensus_6251#2 GGCCAAGCCGATGGTGCTGCGGCGCAACCTGCGCAAGTT--CGACG-GGTTCGAGTTCGG 636 ** *** ** * * * * * * * * ** * * ** * * **** consensus_6251#0 CCGAAGCGGAAATCGGTTGCGAAGGCGGGTGGCCGCGCGGCAGCTGCCGTAGCCAACAAT 1059 consensus_6251#1 CCGAAGCGGAAATCGGTTGCGAAGGCGGGTGGCCGCGCGGCAGCTGCCGTAGCCAACAAT 910 consensus_6251#2 CGCGGACTCGGACGCGTACCGGAAGCGCGTGTCGGC------------------------ 672 * * * ** ** * *** *** * ** consensus_6251#0 AAGAGCAAGAATGCGAGTGCGGCGGCAAAAGGGTG------------------------- 1094 consensus_6251#1 AAGAGCAAGAATGCGAGTGCGGCGGCAAAGGGTGGACGAGGACAGCCGAAACGGGCGGCA 970 consensus_6251#2 ------------------------------------------------------------ consensus_6251#0 ----------------------------------------------------- consensus_6251#1 GCAGTAAGCAGCGCCAAGAAGTCGCGACGGGGCCGTGGACGCAGCTCGTCCGG 1023 consensus_6251#2 ----------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||