These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6253#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1019 fasta sequence [CTGCTGGACTACGCGGCATCAGGGGACAGACGTGCTGCAAGCATGTTCCCTTCTGCAATTATTTGCTGTTAAAGACGAGCAGCATCTTAAAAGTGTTAATTTG-GATATTTCTTTTGGGCTGCAGTACGCTTTTATCGGTCAAGGTTGTAATTGTTGCTAACAAGCCGAAAGCAGAAACGATGCTCGTCCATTCGGTGACCCGTGAGTAGTGTGTCTGCGTGTCATCATAGTGTTTCCAAGTGCCGTGTTTGTACGCCCGGGTGCGCTGCCTCGGGGGTGTAGGAGATCGTCTTCGCGAGGAGCTGCTTCCGTAAGCCGATCCCACCCATCCACCCCAGTCACCCGGTCCAGTCGGTTTGTGAGTCATGGAGCGTATATTGCGAGGCGTTATGCGTTACCGGCATACGACCCGCGAGCAAATGGTGCAGGAATTTCGGAAAGTTCGTGACAATCCGCAGCCTAAAGCCGTGTTTTTCACCTGCATGGACAGTCGCATGATCCCGACCCGGTTTACCGAGACGCACGTCGGCGACATGTTTGTCGTGCGTAATGCCGGCAATCTGGTACCGCACGCAGAACACTTCCAGGACGAGTACTTTAGCTGCGAACCGGCCGCCCTAGAGTTGGGCTGTGTCGTGAACAACATCAAGCACATCATCGTCTGCGGGCACAGCGATTGTAAAGCGATGAACTTGCTGTACAAACTGAAAGATCCCGAGTTTGCCTCGTTGGACAACCGGCGCATATCGCCGCTGCGGGCGTGGCTGTGCGAGCACGCCAACACGAGCCTGGCCAAGTTTCAAAACCTCAAAGAAATCGGGCTCGATAAGCCGCTCATCTTCTCGTCCGAAACGCCGCTCCGCAAGTTCGTCGCGTACATCGATCCGGAGAACAACTTTGCGATCGAGGACAAGCTGTCCCAGGTGAACACGCTGCAGCAGATCGAGAACGTGGCGTCGTACGGGTTTCTCAAGCGCCGGCTCGAATCGCACGATCTGCACATCCACGCGCTTTGGTTC] [+] EMBL BX624272 [CTGCTGGACTACGCGGCATCAGGGGACAGACGTGCTGCAAGCATGTTCCCTTCTGCAATTATTTGCTGTTAAAGACGAGCAGCATCTTAAAAGTGTTAATTTG GATATTTCTTTTGGGCTGCAGTACGCTTTTATCGGTCAAGGTTGTAATTGTTGCTAACAAGCCGAAAGCAGAAACGATGCTCGTCCATTCGGTGACCCGTGAGTAGTGTGTCTGCGTGTCATCATAGTGTTTCCAAGTGCCGTGTTTGTACGCCCGGGTGCGCTGCCTCGGGGGTGTAGGAGATCGTCTTCGCGAGGAGCTGCTTCCGTAAGCCGATCCCACCCATCCACCCCAGTCACCCGGTCCAGTCGGTTTGTGAGTCATGNNGCGTATATTGCGAGGCGTTATGCGTTACCGGCATACGACCCGCGAGCAAATGGTGCAGGAATTTCGGAAAGTTCGTGACAATCCGCAGCCTAAAGCCGTGTTTTTCACCTGCATGGACAGTCGCATGATCCCGACCCNGTNTACCGA ] [+] EMBL CNS08ZZW [ agggctcGTTTAGTTGTGA ATTTCTTTCATTAAATACTACGCTTTTATCGGTCAAGGTTGTAATTGTTGCTAACAAGCCGAAAGCAGAAACGATGCTCGTCCATTCGGTGACCCGTGAGGGGGGTGCCTGCGTGTCA A AGTGTTTCCAAGTGCCGTGTTTGTACGCCCGGGTGCGCTGCCTCTTGGGTGTACGAGATCGTCTTCGCGAGGAGCTGCTTCCGTAAGCCGATCCCACCCATCCACCCCAGTCACCCGGTCCAGTCGGTTTGTGAGTCATGGAGCGTATATTGCGAGGCGTTATGCGTTACCGGCATACGACCCGCGAGCAAATGGTGCAGGAATTTCGGAAAGTTCGTGACAATCCGCAGCCTAAAGCCGTGTTTTTCACCTGCATGGACAGTCGCATGATCCCGACCCGGTTTACCGAGACGCACGTCGGCGACATGTTTGTCGTGCGTAATGCCGGCAATCTGGTACCGCACGCAGAACACTTCCAGGACGAGTACTTTAGCTGCGAACCGGCCGCCCTAGAGTTGGGCTGTGTCGTGAACAACATCAAGCACATCATCGTCTGCGGGCACAGCGATTGTAAAGCGATGAACTTGCTGTACAAACTGAAAGATCCCGAGTTTGCCTCGTTGGACAACCGGCGCATATCGCCGCTGCGGGCGTGGCTGTGCGAGCACGCCAACACGAGCCTGGCCAAGTTTCAAAACCTCAAAGAAATCGGGCTCGATAAGCCGCTCATCTTCTCGTCCGAAACGCCGCTCCGCAAGTTCGTCGCGTACATCGATCCGGAGAACAACTTTGCGATCGAGGACAAGCTGTCCCAGGTGAACACGCTGCAGCAGATCGAGAACGTGGCGTCGTACGGGTTTCTCAAGCGCCGGCTCGAATCGCACGATCTGCACATCCACGCGCTTTGGTTC] [+] EMBL BX614982 [ GCGAGGAGCTGCTTCCGTAAGCCGATCCCACCCATCCACCCCAGTCACCCGGTCCAGTCGGTTTGTGAGTCATGGAGCGTATATTGCGAGGCGTTATGCGTTACCGGCATACGACCCGCGAGCAAATGGTGCACGAATTTCGGAAAGCTCGTGACAATCCGCAGCCTAAAGCCGTGTTTTTCACCTGCATGGACAGTCGCATGATCCCGACCCGGTTTACCGAGACGCACGTCGGCGACATGTCTGTCGTGCGTAATGCCGGCAATCTCGTACCGCACGCAGAACACTTCCAGGACGAGTACTTTAGCTGCGAACCGGCCGCCCTAGAGTTGGGCTGTGTCGTGAACAACATCAAGCATATCATCGTCTGCGGGCACAGCGATTGTAAAGCGATGAACTTGCTGTACAAGCTGAAAGATCCCGAGTTTGCCTC ] consensusID : consensus_6253#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 642 fasta sequence [AAGGGTTGGGAATAGGGGCGAGCTCGCGCCCAGCGTTGTACGCTCCCATCGGTCAAGGGTTGTAAATTGTTGCTAACAAGCCGAAAGCAGAAACGATGCTCGTCCATTCGGTGACCCGTGAGTAGTGTGTCTGCGTGTCATCATAGTGTTTCCAAGTGCCGTGTTTGTACGCCCGGGTGCGCTGCCTCGGGGGTGTAGGAGATCGTCTTCGCGAGGAGCTGCTTCCGTAAGCCGATCCCACCCATCCACCCCAGTCACCCGGTCCAGTCGGTTTGTGAGTCATGGAGCGTATATTGCGAGGCGTTATGCGTTACCGGCATACGACCCGCGAGCAAATGGTGCAGGAATTTCGGAAAGTTCGTGACAATCCGCAGCCTAAAGCCGTGTTTTTCACCTGCATGGACAGTCGCATGATCCCGACCCGGTTTACCGAGACGCACGTCGGCGACATGTTTGTCGTGCGTAATGCCGGCAATCTGGTACCGCACGCAGAACACTTCCAGGACGAGTACTTTAGCTGCGAACCGGCCGCCCTAGAGTTGGGCTGTGTCGTGAACAACATCAAGCACATCATCGTCTGCGGGCACAGCGATTGTAAAGCGATGAACTTGCTGTACAAACTGAAAGATCCCGAGTTTGCCT] [+] EMBL AL932777 [AAGGGTTGGGAATAGGGGCGAGCTCGCGCCCAGCGTTGTACGCTCCCATCGGTCAAGGGTTGTAAATTGTTGCTAACAAGCCGAAAGCAGAAACGATGCTCGTCCATTCGGTGACCCGTGAGTAGTGTGTCTGCGTGTCATCATAGTGTTTCCAAGTGCCGTGTTTGTACGCCCGGGTGCGCTGCCTCGGGGGTGTAGGAGATCGTCTTCGCGAGGAGCTGCTTCCGTAAGCCGATCCCACCCATCCACCCCAGTCACCCGGTCCAGTCGGTTTGTGAGTCAT ] [+] EMBL BM613734 [ ccggTGCGAATAGGGGCGAGCTCACGCTCAGCTTTGTACGCTTTTATCGGTCAA GGTTGT AATTGTTGCTAACAAGCCGAAAGCAGAAACGATGCTCGTCCATTCGGTGACCCGTGAGTAGTGTGCCTGCGTGTCA A AGTGTTTCCAAGTGCCGTGTTTGTACGCCCGGGTGCGCTGCCTCTTGGGTGTACGAGATCGTCTTCGCGAGGAGCTGCTTCCGTAAGCCGATCCCACCCATCCACCCCAGTCACCCGGTCCAGTCGGTTTGTGAGTCATGGAGCGTATATTGCGAGGCGTTATGCGTTACCGGCATACGACCCGCGAGCAAATGGTGCAGGAATTTCGGAAAGTTCGTGACAATCCGCAGCCTAAAGCCGTGTTTTTCACCTGCATGGACAGTCGCATGATCCCGACCCGGTTTACCGAGACGCACGTCGGCGACATGTTTGTCGTGCGTAATGCCGGCAATCTGGTACCGCACGCAGAACACTTCCAGGACGAGTACTTTAGCTGCGAACCGGCCGCCCTAGAGTTGGGCTGTGTCGTGAACAACATCAAGCACATCATCGTCTGCGGGCACAGCGATTGTAAAGCGATGAACTTGCTGTACAAACTGAAAGATCCCGAGTTTGCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6253#0 CTGCTGGACTACGCGGCATCAGGGGACAGACGTGCTGCAAGCATGTTCCCTTCTGCAATT 60 consensus_6253#1 ------------------------------------------------------------ consensus_6253#0 ATTTGCTGTTAAAGACGAGCAGCATCTTAAAAGTGTTAATTTGGAT-ATTTCTTTTGGGC 119 consensus_6253#1 ---------------------------AAGGGTTGGGAATAGGGGCGAGCTCGCGCCCAG 33 * ** *** ** * ** consensus_6253#0 TGCAGTACGCTTTTATCGGTCAAGG-TTGTAA-TTGTTGCTAACAAGCCGAAAGCAGAAA 177 consensus_6253#1 CGTTGTACGCTCCCATCGGTCAAGGGTTGTAAATTGTTGCTAACAAGCCGAAAGCAGAAA 93 * ******* *********** ****** *************************** consensus_6253#0 CGATGCTCGTCCATTCGGTGACCCGTGAGTAGTGTGTCTGCGTGTCATCATAGTGTTTCC 237 consensus_6253#1 CGATGCTCGTCCATTCGGTGACCCGTGAGTAGTGTGTCTGCGTGTCATCATAGTGTTTCC 153 ************************************************************ consensus_6253#0 AAGTGCCGTGTTTGTACGCCCGGGTGCGCTGCCTCGGGGGTGTAGGAGATCGTCTTCGCG 297 consensus_6253#1 AAGTGCCGTGTTTGTACGCCCGGGTGCGCTGCCTCGGGGGTGTAGGAGATCGTCTTCGCG 213 ************************************************************ consensus_6253#0 AGGAGCTGCTTCCGTAAGCCGATCCCACCCATCCACCCCAGTCACCCGGTCCAGTCGGTT 357 consensus_6253#1 AGGAGCTGCTTCCGTAAGCCGATCCCACCCATCCACCCCAGTCACCCGGTCCAGTCGGTT 273 ************************************************************ consensus_6253#0 TGTGAGTCATGGAGCGTATATTGCGAGGCGTTATGCGTTACCGGCATACGACCCGCGAGC 417 consensus_6253#1 TGTGAGTCATGGAGCGTATATTGCGAGGCGTTATGCGTTACCGGCATACGACCCGCGAGC 333 ************************************************************ consensus_6253#0 AAATGGTGCAGGAATTTCGGAAAGTTCGTGACAATCCGCAGCCTAAAGCCGTGTTTTTCA 477 consensus_6253#1 AAATGGTGCAGGAATTTCGGAAAGTTCGTGACAATCCGCAGCCTAAAGCCGTGTTTTTCA 393 ************************************************************ consensus_6253#0 CCTGCATGGACAGTCGCATGATCCCGACCCGGTTTACCGAGACGCACGTCGGCGACATGT 537 consensus_6253#1 CCTGCATGGACAGTCGCATGATCCCGACCCGGTTTACCGAGACGCACGTCGGCGACATGT 453 ************************************************************ consensus_6253#0 TTGTCGTGCGTAATGCCGGCAATCTGGTACCGCACGCAGAACACTTCCAGGACGAGTACT 597 consensus_6253#1 TTGTCGTGCGTAATGCCGGCAATCTGGTACCGCACGCAGAACACTTCCAGGACGAGTACT 513 ************************************************************ consensus_6253#0 TTAGCTGCGAACCGGCCGCCCTAGAGTTGGGCTGTGTCGTGAACAACATCAAGCACATCA 657 consensus_6253#1 TTAGCTGCGAACCGGCCGCCCTAGAGTTGGGCTGTGTCGTGAACAACATCAAGCACATCA 573 ************************************************************ consensus_6253#0 TCGTCTGCGGGCACAGCGATTGTAAAGCGATGAACTTGCTGTACAAACTGAAAGATCCCG 717 consensus_6253#1 TCGTCTGCGGGCACAGCGATTGTAAAGCGATGAACTTGCTGTACAAACTGAAAGATCCCG 633 ************************************************************ consensus_6253#0 AGTTTGCCTCGTTGGACAACCGGCGCATATCGCCGCTGCGGGCGTGGCTGTGCGAGCACG 777 consensus_6253#1 AGTTTGCCT--------------------------------------------------- 642 ********* consensus_6253#0 CCAACACGAGCCTGGCCAAGTTTCAAAACCTCAAAGAAATCGGGCTCGATAAGCCGCTCA 837 consensus_6253#1 ------------------------------------------------------------ consensus_6253#0 TCTTCTCGTCCGAAACGCCGCTCCGCAAGTTCGTCGCGTACATCGATCCGGAGAACAACT 897 consensus_6253#1 ------------------------------------------------------------ consensus_6253#0 TTGCGATCGAGGACAAGCTGTCCCAGGTGAACACGCTGCAGCAGATCGAGAACGTGGCGT 957 consensus_6253#1 ------------------------------------------------------------ consensus_6253#0 CGTACGGGTTTCTCAAGCGCCGGCTCGAATCGCACGATCTGCACATCCACGCGCTTTGGT 1017 consensus_6253#1 ------------------------------------------------------------ consensus_6253#0 TC 1019 consensus_6253#1 -- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||