These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6254#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1065 fasta sequence [ATCGCCCGAGGTTTTTATTTCACCAACCGGCAGACCGGTACGTCATGATCGAGGATCGCCGGCTGGCCGACTTCTATGCCAACTTCCTGGGGAAGGTGCAGGAGTTTAGCCTGACGGTGGGGCGCGATGGAGCGACCCGACTGCACGACACGTGGACCATGCTGCCGTACAAGTGTGCCCAGCTAGAGTTTGCCACGGAAGCGCGGGATCGCATCCGGGCGTACTATCGCAGCGTGATGGACGAGCAGCGGGCGGTTTGCGAGCGGGACGAGGCACAGCACGCGGACACGTGGATATTCCCGCTGATCGAGATGGGACAGCTCGGCATACATCACGACAGCCTGGCGACGAAGCAGCTGCTGTCGGGTTGTTTGGCCGGCTCGCAGCTGCGGTTGGCGACGGGATACTTTAACCTAACGGAAACGTACATGAACACGCTGACGCACGAGTGCCAGGCACAGTGTAACATACTGATGGCGCACCCGAACGCCAACGGGTTCCTCGGAGCGAAAGGACCGGCGGGCGGTATCCCCGCAGCATACTCCCTGCTGGCGCGCAAGTTTCTCGAGATGCTGAAATCGTCCGGCCAAAGCCACCGGGTGGAGCTGCTCGAGTACGAACGACCCGGGTGGACGTACCACGCCAAGGGCCTGTGGTACTATCTACCCGACTCGTCCCTCCCGAACGTCACCCTCATCGGTTCGTCCAACTTTGGCGAGCGCTCGGTGAACCGCGACCTCGAGGCACAGATCTGCGTGGTCACGAATAACGCCACTCTGCAGCGCAAGCTCGAAACCGAGTATCAAAATTTGCTCCAGCACGCGACCACCGCCGAAACGGAGCTCATCAACCGGCCGGTGCCCCGGTGGGTGCGTGCCGTCGTGGGACTGTTTCGCAACTTTTTCTAATCTCGCCCCGCTTCCGCTGGCGGCCGGTCCGGGTCCGGCCGACAGCATCATTGCGCATCGAAGATGCCATACTCGTGAGTCCGCGCGAACAAACGCCTAACGTATCGAATACACGTGACAGTCCCGTTGGAGTTGTGATCAGTGTTAAGCCGACCAA] [+] EMBL AL932765 [ATCGCCCGAGGTTTTTATTTCACCAACCGGCAGACCGGTACGTCATGATCGAGGATCGCCGGCTGGCCGACTTCTATGCCAACTTCCTGGGGAAGGTGCAGGAGTTTAGCCTGACGGTGGGGCGCGATGGAGCGACCCGACTGCACGACACGTGGACCATGCTGCCGTACAAGTGTGCCCAGCTAGAGTTTGCCACGGAAGCGCGGGATCGCATCCGGGCGTACTATCGCAGCGTGATGGACGAGCAGCGGGCGGTTTGCGAGCGGGACGAGGCACAGCACGCGGACACGTGGATATTCCCGCTGATCGAGATGGGACAGCTCGGCATACATCACGACAGCCTGGCGACGAAGCAGCTGCTGTCGGGTTGTTTGGCCGGCTCGCAGCTGCGGTTGGCGACGGGATACTTTA ] [+] EMBL BX610129 [ CGAGATGGGACAGCTCGGCATACATCACGACAGCCTGGCGACGAAGCAGCTGCTGTCGGGTTGTTTGGCCGGCTCGCAGCTGCGGTTGGCGACGGGATACTTTAACCTAACGGAAACGTACATGAACACGCTGACGCACGAGTGTCAGGCACAGTGTAACATACTGATGGCGCACCCGAACGCCAACGGGTTCCTCGGAGCGAAAGGACCGGCGGGCGGTATCCCCGCAGCATACTCCCTGCTGGCGCGCAAGTTTCTCGAGATGCTGAAATCGTCCGGCCAAAGCCACCGGGTGGAGCTGCTCGAGTACGAACGACCCGGGTGGACGTACCACGCCAAGGGCCTGTGGTACTATCTACCCGACTCGTCCCTCCCGAACGTCACCCTCATCGGTTCGTCCAACTTTGGCGAGCGCTCGGTGAACCGCGATCTCGAGGCACAGATCTGCGTGGTCACGAATAACACCACACTGCAGCGCAAGCTCGAAGTCGAGTATCAAAATTTGCTCCAGCACGCGACCACCGCCGAAACGGAGCTCATCAACCGTCCGGTGCCCCGGTGGGTGCGTGCCGTCGTGGGACTGTTTCGCAACTTTTTCTAATCTCGCCCCGCTT ] [+] EMBL BX617036 [ ACAGCTCGGCATACATCACGACAGCCTGGCGACGAAGCAGCTGCTGTCGGGTTGTTTGGCCGGCTCGCAGCTGCGGTTGGCGACGGGATACTTTAACCTAACGGAAACGTACATGAACACGCTGACGCACGAGTGCCAGGCACAGTGTAACATACTGATGGCGCACCCGAACGCCAACGGGTTCCTCGGAGCGAAAGGACCGGCGGGCGGTATCCCCGCAGCATACTCCCTGCTGGCGCGCAAGTTTCTCGAGATGCTGAAATCGTCCGGCCAGAGCCACCGGGTGGAGCTGCTCGAGTACGAACGACCCGGGTGGACGTACCACGCCAAGGGTCTGTGGTACTATCTACCCGACTCGTCCCTCCCGAACGTCACCCTCATCGGTTCGTCCAACTTTGGCGAGCGCTCGGTGAACCGCGACCTCGAGGCACAGATCTGCGTGGTCACGAATAACGCCACTCTGCAGCGCAAGCTCGAAACCGAGTATCAAAATTTGCTCCAGCACGCGACCACCGCCGAAATGGAGCTCATCAACCGGCCGGTGCCCCGGTGGGTGCGTGCCGTCGTGGGACTGTTTCGCAACTTTTTCTAATCTCGCCCCACTTCCGCTGGCGGCCGGTCCGGGTCCGGCCGACAGCATCATTGCGCATCGAAGATGCCATACTCGTGAGTCCGCGCGAACAAACGCCTAACGTATCGAATACACGTGACAGTCCCGTTGGAGTTGTGATCAGTGTTAAGCCGACCAA] [+] EMBL BX628871 [ CATGAACACGCTGACGAACGAGTGCCAGGCACAGTGTAACATACTGATGGCGCACCCGAACGCCAACGGGTTCCTCGGAGCGAAAGGACCGGCGGGCGGTATCCCCGCAGCATACTCCCTGCTGGCGCGCNAGTTTCTCGAGATGCTGAAATCGTCCGGCCAAAGCCACCGGGTGGAGCTGCTCGAGTACGAACGACCCGGGTGGACGTACCACGCCAAGGGCCTGTGGTACTATCTACCCGACTCGTCCCTCCCGAACGTCACCCTCATCGGTTCGTCCAACTTTGGCGAGCGCTCGGTGAACCGCGACCTCGAGGCACAGATCTGCG CGTCACGAATAACGCCNCTCTGCAACGCAAGCTCGAAACCGAGTATCAAAATTTGCTCCAGCACGCGACCACCGCCGAAACGGAGCTCATCAACCGGCCGGTGCCCCGGTGGGTGCGTGCCGTCGTGGGACTGTTTCGCAACTTTTTCTAATCTCGCCCCGCTTCCGCTGGCGGCCGGTCCGGG ] consensusID : consensus_6254#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 640 fasta sequence [CCAAGAATCGGCACGAGGTACATGAACACGCTGACGAACGAGTGCCAGGCACAGTGTAACATACTGATGGCGCACCCGAACGCCAACGGGTTCCTCGGAGCGAAAGGACCGGCGGGCGGTATCCCCGCAGCATACTCCCTGCTGGCGCGCAAGTTTCTCGAGATGCTGAAATCGTCCGGCCAAAGCCACCGGGTGGAGCTGCTCGAGTACGAACGACCCGGGTGGACGTACCACGCCAAGGGCCTGTGGTACTATCTACCCGACTCGTCCCTCCCGAACGTCACCCTCGATCGGTTCGTCCAACTTTGGCGAGCGCTCGGTGAACCGCGACCTCGAGGCACAGATCTGCGTGGTCACGAATAACGCCACTCTGCAACGCAAGCTCGAAACCGAGTATCAAAATTTGCTCCAGCACGCGANCACCGCNCGAAACGGAGCTCATCAACCGGCCGGTGCCCCGGTGGGTGCGTGCCGTCGTGGGACTTTTTCGCAANTTTTTCTAATCTCGCCCCGGTTTCCGCTGGCGGCCGGTCCGGGTCCGGCCGACGGCGATCATTGCGCATCGAAGGATGCCATACTCGTGAGCCCGCGCGAACAAACTGCCTAACGTATCGAATTAACACGTTGACAGTCCGTTCGG] [+] EMBL BX469846 [CCAAGAATCGGCACGAGGTACATGAACACGCTGACGAACGAGTGCCAGGCACAGTGTAACATACTGATGGCGCACCCGAACGCCAACGGGTTCCTCGGAGCGAAAGGACCGGCGGGCGGTATCCCCGCAGCATACTCCCTGCTGGCGCGCAAGTTTCTCGAGATGCTGAAATCGTCCGGCCAAAGCCACCGGGTGGAGCTGCTCGAGTACGAACGACCCGGGTGGACGTACCACGCCAAGGGCCTGTGGTACTATCTACCCGACTCGTCCCTCCCGAACGTCACCCTCGATCGGTTCGTCCAACTTTGGCGAGCGCTCGGTGAACCGCGACCTCGAGGCACAGATCTGCGTGGTCACGAATAACGCCACTCTGCAACGCAAGCTCGAAACCGAGTATCAAAATTTGCTCCAGCACGCGANCACCGCNCGAAACGGAGCTCATCAACCGGCCGGTGCCCCGGTGGGTGCGTGCCGTCGTGGGACTTTTTCGCAANTTTTTCTAATCTCGCCCCGGTTTCCGCTGGCGGCCGGTCCGGGTCCGGCCGACGGCGATCATTGCGCATCGAAGGATGCCATACTCGTGAGCCCGCGCGAACAAACTGCCTAACGTATCGAATTAACACGTTGACAGTCCGTTCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6254#0 ATCGCCCGAGGTTTTTATTTCACCAACCGGCAGACCGGTACGTCATGATCGAGGATCGCC 60 consensus_6254#1 ------------------------------------------------------------ consensus_6254#0 GGCTGGCCGACTTCTATGCCAACTTCCTGGGGAAGGTGCAGGAGTTTAGCCTGACGGTGG 120 consensus_6254#1 ------------------------------------------------------------ consensus_6254#0 GGCGCGATGGAGCGACCCGACTGCACGACACGTGGACCATGCTGCCGTACAAGTGTGCCC 180 consensus_6254#1 ------------------------------------------------------------ consensus_6254#0 AGCTAGAGTTTGCCACGGAAGCGCGGGATCGCATCCGGGCGTACTATCGCAGCGTGATGG 240 consensus_6254#1 ------------------------------------------------------------ consensus_6254#0 ACGAGCAGCGGGCGGTTTGCGAGCGGGACGAGGCACAGCACGCGGACACGTGGATATTCC 300 consensus_6254#1 ------------------------------------------------------------ consensus_6254#0 CGCTGATCGAGATGGGACAGCTCGGCATACATCACGACAGCCTGGCGACGAAGCAGCTGC 360 consensus_6254#1 ------------------------------------------------------------ consensus_6254#0 TGTCGGGTTGTTTGGCCGGCTCGCAGCTGCGGTTGGCGACGGGATACTTTAACCTAACGG 420 consensus_6254#1 ----------------------------------------------CCAAGAATCGGCAC 14 * * * consensus_6254#0 AAACGTACATGAACACGCTGACGCACGAGTGCCAGGCACAGTGTAACATACTGATGGCGC 480 consensus_6254#1 GAG-GTACATGAACACGCTGACGAACGAGTGCCAGGCACAGTGTAACATACTGATGGCGC 73 * ******************* ************************************ consensus_6254#0 ACCCGAACGCCAACGGGTTCCTCGGAGCGAAAGGACCGGCGGGCGGTATCCCCGCAGCAT 540 consensus_6254#1 ACCCGAACGCCAACGGGTTCCTCGGAGCGAAAGGACCGGCGGGCGGTATCCCCGCAGCAT 133 ************************************************************ consensus_6254#0 ACTCCCTGCTGGCGCGCAAGTTTCTCGAGATGCTGAAATCGTCCGGCCAAAGCCACCGGG 600 consensus_6254#1 ACTCCCTGCTGGCGCGCAAGTTTCTCGAGATGCTGAAATCGTCCGGCCAAAGCCACCGGG 193 ************************************************************ consensus_6254#0 TGGAGCTGCTCGAGTACGAACGACCCGGGTGGACGTACCACGCCAAGGGCCTGTGGTACT 660 consensus_6254#1 TGGAGCTGCTCGAGTACGAACGACCCGGGTGGACGTACCACGCCAAGGGCCTGTGGTACT 253 ************************************************************ consensus_6254#0 ATCTACCCGACTCGTCCCTCCCGAACGTCACCCTC-ATCGGTTCGTCCAACTTTGGCGAG 719 consensus_6254#1 ATCTACCCGACTCGTCCCTCCCGAACGTCACCCTCGATCGGTTCGTCCAACTTTGGCGAG 313 *********************************** ************************ consensus_6254#0 CGCTCGGTGAACCGCGACCTCGAGGCACAGATCTGCGTGGTCACGAATAACGCCACTCTG 779 consensus_6254#1 CGCTCGGTGAACCGCGACCTCGAGGCACAGATCTGCGTGGTCACGAATAACGCCACTCTG 373 ************************************************************ consensus_6254#0 CAGCGCAAGCTCGAAACCGAGTATCAAAATTTGCTCCAGCACGCGACCACCGCC-GAAAC 838 consensus_6254#1 CAACGCAAGCTCGAAACCGAGTATCAAAATTTGCTCCAGCACGCGANCACCGCNCGAAAC 433 ** ******************************************* ****** ***** consensus_6254#0 GGAGCTCATCAACCGGCCGGTGCCCCGGTGGGTGCGTGCCGTCGTGGGACTGTTTCGCAA 898 consensus_6254#1 GGAGCTCATCAACCGGCCGGTGCCCCGGTGGGTGCGTGCCGTCGTGGGACTTTTTCGCAA 493 *************************************************** ******** consensus_6254#0 CTTTTTCTAATCTCGCCCCG-CTTCCGCTGGCGGCCGGTCCGGGTCCGGCCGACAGC-AT 956 consensus_6254#1 NTTTTTCTAATCTCGCCCCGGTTTCCGCTGGCGGCCGGTCCGGGTCCGGCCGACGGCGAT 553 ******************* ******************************** ** ** consensus_6254#0 CATTGCGCATCGAAG-ATGCCATACTCGTGAGTCCGCGCGAACAAAC-GCCTAACGTATC 1014 consensus_6254#1 CATTGCGCATCGAAGGATGCCATACTCGTGAGCCCGCGCGAACAAACTGCCTAACGTATC 613 *************** **************** ************** ************ consensus_6254#0 GAAT--ACACGT-GACAGTCCCGTTGGAGTTGTGATCAGTGTTAAGCCGACCAA 1065 consensus_6254#1 GAATTAACACGTTGACAGTCCGTTCGG--------------------------- 640 **** ****** ******** * ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||