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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6256#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1442 fasta sequence
[TTTTTTAATGG-CTTTTGCTTCCCCGTTTTCCTTCCAAAAATGGTGGAAAAAATGTATAAAAAAGGGGACATGGAGGTAAAGTGCAATTTTCGGCCTGTGACCCTACAGTTGCATTATTGCCCTTGGACTGCCTTTAACTCCCAAACGGAAAGAGAACGTAACACGGAAGATTGCACTTTGCGCGTTGCAGCACGTTGCGGTTAAAAAACGCGAGCTGGCAAGAAAGCAGTACCACTTACCTTGGTGTTCCGCTCTTCCTATTTTCTCCATCTCATTTCCATCTCCAAGCCTGGTCGTTACTGCCATCTCGCCGAACGTCGTCGTGACGGTGCTGCTGCGCCTGCGGGAGGAACGGCTCGGGCTGAACAAAGGCATTCACACATTAATCATCGCCATGACAAGCTGTAATGATGTGCTGGCAATTTTCCTGTTCGGCGTCATCCTGGGGGTGATATTTTCCACCGGCGATCTTACCAGCCAGATCCTGCAGGGACCGATCGGTATCGTGATCGGGCTGGTGTACGGCAGCCTGTGCGGGCTTG-CCTGCTGTACCTGCCCTCGTACCAAGCGAAGTACACCAACGGGTTGCGGTTCGCGATGACGGCCCTCGCCGGCA-CGCTGTCGGTGGTGGGCAGCAAAAAG-GTGGGCTACCCGTCGGCCGGTGCGCTCGGTTGCATCGTAACCGCGTTCGTGGCCGGTACCGGGTGGCGCAA-CGGCCCCCGACCGAGTGCAAAG-GTTGAGCATGTACCTGGATCTGCTGTGGAAGTTTCTCAAGCCCGTCTCGTTCTCGCTGATCGGGAAGGAGGTAAAGTTTTCCGTACTCGAAGGTGAAACGTTCCTGTACGGGTTCGTGACACTGCTGGTAGCGGTGCTGGTAAGTGGTTCCGGGCACCGGCTCACACACCGAACACGGCACACATGATTTACTCACTGGCTTTTTTGACGTTTACAGTTGCGATTGATTGCCTCCTACCTGTCGACGGTGGGCAGCGAGCTGAACTGGAAGGAGAAGGCGTACGTCACGCTGGCCGGCTCCCCGAAAGCTACCGTGCAGGCGGCCCTCGGACCGGCCGCCCTCGATCTTGCCCGCAGCGTGAACGCGACGGACGAGTACGGCCGGGCGCAGACCGTGCTGATCGTGACGGTGCTGGCGATCATACTGACTGCACCACTAGGCGCACTGCTCATGATCAAGCTGGCCCCGCGCTGGCTAAAGCGATCGACCGACGAGCGGACGGACCAGTACAGCTGACAGGGGGTGGGGTGAAGGTGTATGGTGTAAAGATAGTGACTTAAGGTGCTGGTACTTGCTGACCCGTTTTTACTTAACAATGTGACCCAATGTTAGGATTTAGTTTGATCGACTTAGACTTACGTTGTTACTTAATTGATCGTGCAAAGTGTGCCTTTACTCGAGCAAGTGTGAATCTTCAAGACAATCT]
[+] EMBL CNS09GDR [TTTTTTAATGG CTTTTGCTTCCCCGTTTTCCTTCCAAAAATGGTGGAAAAAATGTATAAAAAAGGGGACATGGAGGTAAAGTGCAATTTTCGGCCTGTGACCCTACAGTTGCATTATTGCCCTTGGACTGCCTTTAACTCCCAAACGGAAAGAGAACGTAACACGGAAGATTGCACTTTGCGCGTTGCAGCACGTTGCGGTTAAAAAACGCGAGCTGGCAAGAAAGCAGTACCACTTACCTTGGTGTTCCGCTCTTCCTATTTTCTCCATCTCATTTCCATCTCCAAGCCTGGTCGTTACTGCCATCTCGCCGAACGTCGTCGTGACGGTGCTGCTGCGCCTGCGGGAGGAACGGCTCGGGCTGAACAAAGGCATTCACACATTAATCATCGCCATGACAAGCTGTAATGATGTGCTGGCAATTTTCCTGTTCGGCGTCATCCTGGGGGTGATATTTTCCACCGGCGATCTTACCAGCCAGATCCTGCAGGGACCGATCGGTATCGTGATCGGGCTGGTGTACGGCAGCCTGTGCGGGCTTGCCCTGCTGTACCTGCCCTCGTACCAAGCGAAGTACACCAACGGGTTGCGGTTCGCGATGACGGCCCTCGCCGGCA CGCTGTCGGTGGTGGGCAGCAAAAAG GTGGGCTACCCGTCGGCCGGTGCGCTCGGTTGCATCGTAACCGCGTTCGTGGCCGGTACCGGGTG ]
[+] EMBL CNS09Q3G [ TAATGGCCTTTTGCTTCCCCGTTTTCCTTCCAAAAATGGTGGAAAAAATGTATAAAAAAGGGGACATGGAGGTAAAGTGCAATTTTCGGCCTGTGACCCTACAGTTGCATTATTGCCCTTGGACTGCCTTTAACTCCCAAACGGAAAGAGAACGTAACACGGAAGATTGCACTTTGCGCGTTGCAGCACGTTGCGGTTAAAAAACGCGAGCTGGCAAGAAAGCAGTACCACTTACCTTGGTGTTCCGCTCTTCCTATTTTCTCCATCTCATTTCCATCTCCAAGCCTGGTCGTTACTGCCATCTCGCCGAACGTCGTCGTGACGGTGCTGCTGCGCCTGCGGGAGGAACGGCTCGGGCTGAACAAAGGCATTCACACATTAATCATCGCCATGACAAGCTGTAATGATGTGCTGGCAATTTTCCTGTTCGGCGTCATCCTGGGGGTGATATTTTCCACCGGCGATCTTACCAGCCAGATCCTGCAGGGACCGATCGGTATCGTGATCGGGCTGGTGTACGGCAGCCTGTGCGGGCTTG CCTGCTGTACCTGCCCTCGTACCAAGCGAAGTACACCAACGGGTTGCGGTTCGCGATGACGGCCCTCGCCGGCA CGCTGTCGGTGGTGGGCAGCAAAAAGTGTGGGCTACCCGTCGGCCGGTGCGCTCGGTTGCATCGTAACCGCGTTCGTGGCCGGTACCGGGTGGCGCAA CGGCCCCCGACCGAGTGCAAAG GTTGAGCATGTACCTGGATCTGCTGTGGAAGTTTCTCAAGCCCGTCTCGTTCTCGCTGATCGGGAAGGAGGTAAAGTTTTCCGTACTCGAAGGTGAAACGTTCCTGTACGGGTTCGTGACA ]
[-] EMBL CNS09Q3H [ GACGGCCCTCGCCGGCACCGCTGTCGGTGGTGGGCAGCAAAAAG GTGGGCTACCCGTCGGCCGGTGCGCTCGGTTGCATCGTAACCGCGTTCGTGGCCGGTACCGGGTGGCGCAAGCGGCCCCCGACCGAGTGCAACGAGGTGAGCATGTACCTGGATCTGCTGTGGAAGTTTCTCAAGCCCGTCTCGTTCTCGCTGATCGGGAAGGAGGTAAAGTTTTCCGTACTCGAAGGTGAAACCGTCCTGTACGGGTTCGTGAAACTGCTGGTAGCGGTGCTGGTAAGTGGTTCCGGGCACCGGCTCACACACCGAACACGGCACACATGATTTACTCACTGGCTTTTTTGACGTTTACAGTTGCGATTGATTGCCTCCTACCTGTCGACGGTGGGCAGCGAGCTGAACTGGAAGGAGAAGGCGTACGTCACGCTGGCCGGCTCCCCGAAAGCTACCGTGCAGGCGGCCCTCGGACCGGCCGCCCTCGATCTTGCCCGCAGCGTGAACGCGACGGACGAGTACGGCCGGGCGCAGACCGTGCTGATCGTGACGGTGCTGGCGATCATACTGACTGCACCACTAGGCGCACTGCTCATGATCAAGCTGGCCCCGCGCTGGCTAAAGCGATCGACCGACGAGCGGACGGACCAGTACAGCTGACAGGGGGTGGGGTGAAGGTGTATGGTGTAAAGATAGTGACTTAAGGTGCTGGTACTTGCTGACCCGTTTTTACTTAACAATGTGACCCAATGTTAGGATTTAGTTTGATCGACTTAGACTTACGTTGTTACTTAATTGATCGTGCAAAGTGTGCCTTTACTCGAGCAAGTGTGAATCTTCAAGACAATCT]
[-] EMBL CNS09GDS [ TCATGATCAAGCTGGCCCCGCGCTGGCTAAAGCGATCGACCGACGAGCGGACGGACCAGAACAGCTGACAGGGGGTGGGGTGAAGGTGTATGGTGTAAAGATAGTGACTTAAGGTGCTGGTACTTGCTGACCCGTTTTTACTTAACAATGTGACCCAATGTTAGGATTTAGTTTGATCGACTTAAACTTACGTTGTTACTTAATTGATCGTGCAAAGTGTGCCTTTACTCGAGCAAGTGTGAATCTT ]
consensusID : consensus_6256#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 546 fasta sequence
[CCGCCCACGCGTCCGGTAAAGTTTTCCGTACTCGAAGGTGAAACCGTCCTGTACGGGTTCGTGACACTGCTGGTAGCGGTGCTGTTGCGATTGATTGCCTCCTACCTGTCGACGGTGGGCAGCGAGCTGAACTGGAAGGAGAAGGCGTACGTCACGCTGGCCGGCTTCCCGAAAGCTACCGTGCAGGCGGCCCTCGGACCGGCCGCCCTCGATCTTGCCCGCAGCGTGAACGCGACGGACGAGTACGGCCGGGCGCAGACCGTGCTGATCGTGACGGTGCTGGCGATCATACTGACTGCACCACTAGGCGCACTGCTCATGATCAAGCTGGCCCCGCGCTGGCTAAAGCGATCGACCGACGAGCGGACGGACCAGTACAGCTGACAGGGGGTGGGGTGAAGGTGTATGGTGTAAAGATAGTGACTTAAGGTGCTGGTACTTGCTGACCCGTTTTTACTTAACAATGTGACCCAATGTTAGGATTTAGTTTGATCGACTTAGACTTACGTTGTTACTTAATTGATCGTGCAAAGTGTGCCTTTACTC]
[+] EMBL BM627365 [CCGCCCACGCGTCCGGTAAAGTTTTCCGTACTCGAAGGTGAAACCGTCCTGTACGGGTTCGTGACACTGCTGGTAGCGGTGCTGTTGCGATTGATTGCCTCCTACCTGTCGACGGTGGGCAGCGAGCTGAACTGGAAGGAGAAGGCGTACGTCACGCTGGCCGGCTTCCCGAAAGCTACCGTGCAGGCGGCCCTCGGACCGGCCGCCCTCGATCTTGCCCGCAGCGTGAACGCGACGGACGAGTACGGCCGGGCGCAGACCGTGCTGATCGTGACGGTGCTGGCGATCATACTGACTGCACCACTAGGCGCACTGCTCATGATCAAGCTGGCCCCGCGCTGGCTAAAGCGATCGACCGACGAGCGGACGGACCAGTACAGCTGACAGGGGGTGGGGTGAAGGTGTATGGTGTAAAGATAGTGACTTAAGGTGCTGGTACTTGCTGACCCGTTTTTACTTAACAATGTGACCCAATGTTAGGATTTAGTTTGATCGACTTAGACTTACGTTGTTACTTAATTGATCGTGCAAAGTGTGCCTTTACTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6256#0 TTTTTTAATGGCTTTTGCTTCCCCGTTTTCCTTCCAAAAATGGTGGAAAAAATGTATAAA 60
consensus_6256#1 ------------------------------------------------------------
consensus_6256#0 AAAGGGGACATGGAGGTAAAGTGCAATTTTCGGCCTGTGACCCTACAGTTGCATTATTGC 120
consensus_6256#1 ------------------------------------------------------------
consensus_6256#0 CCTTGGACTGCCTTTAACTCCCAAACGGAAAGAGAACGTAACACGGAAGATTGCACTTTG 180
consensus_6256#1 ------------------------------------------------------------
consensus_6256#0 CGCGTTGCAGCACGTTGCGGTTAAAAAACGCGAGCTGGCAAGAAAGCAGTACCACTTACC 240
consensus_6256#1 ------------------------------------------------------------
consensus_6256#0 TTGGTGTTCCGCTCTTCCTATTTTCTCCATCTCATTTCCATCTCCAAGCCTGGTCGTTAC 300
consensus_6256#1 ------------------------------------------------------------
consensus_6256#0 TGCCATCTCGCCGAACGTCGTCGTGACGGTGCTGCTGCGCCTGCGGGAGGAACGGCTCGG 360
consensus_6256#1 ------------------------------------------------------------
consensus_6256#0 GCTGAACAAAGGCATTCACACATTAATCATCGCCATGACAAGCTGTAATGATGTGCTGGC 420
consensus_6256#1 ------------------------------------------------------------
consensus_6256#0 AATTTTCCTGTTCGGCGTCATCCTGGGGGTGATATTTTCCACCGGCGATCTTACCAGCCA 480
consensus_6256#1 ------------------------------------------------------------
consensus_6256#0 GATCCTGCAGGGACCGATCGGTATCGTGATCGGGCTGGTGTACGGCAGCCTGTGCGGGCT 540
consensus_6256#1 ------------------------------------------------------------
consensus_6256#0 TGCCTGCTGTACCTGCCCTCGTACCAAGCGAAGTACACCAACGGGTTGCGGTTCGCGATG 600
consensus_6256#1 ------------------------------------------------------------
consensus_6256#0 ACGGCCCTCGCCGGCACGCTGTCGGTGGTGGGCAGCAAAAAGGTGGGCTACCCGTCGGCC 660
consensus_6256#1 ------------------------------------------------------------
consensus_6256#0 GGTGCGCTCGGTTGCATCGTAACCGCGTTCGTGGCCGGTACCGGGTGGCGCAACGGCCCC 720
consensus_6256#1 ------------------------------------------------------------
consensus_6256#0 CGACCGAGTGCAAAGGTTGAGCATGTACCTGGATCTGCTGTGGAAGTTTCTCAAGCCCGT 780
consensus_6256#1 ------------------------------------------------------------
consensus_6256#0 CTCGTTCTCGCTGATCGGGAAGGAGGTAAAGTTTTCCGTACTCGAAGGTGAAACGTTCCT 840
consensus_6256#1 ----------CCGCCCACGCGTCCGGTAAAGTTTTCCGTACTCGAAGGTGAAACCGTCCT 50
* * * * ****************************** ****
consensus_6256#0 GTACGGGTTCGTGACACTGCTGGTAGCGGTGCTGGTAAGTGGTTCCGGGCACCGGCTCAC 900
consensus_6256#1 GTACGGGTTCGTGACACTGCTGGTAGCGGTGCTG-------------------------- 84
**********************************
consensus_6256#0 ACACCGAACACGGCACACATGATTTACTCACTGGCTTTTTTGACGTTTACAGTTGCGATT 960
consensus_6256#1 ----------------------------------------------------TTGCGATT 92
********
consensus_6256#0 GATTGCCTCCTACCTGTCGACGGTGGGCAGCGAGCTGAACTGGAAGGAGAAGGCGTACGT 1020
consensus_6256#1 GATTGCCTCCTACCTGTCGACGGTGGGCAGCGAGCTGAACTGGAAGGAGAAGGCGTACGT 152
************************************************************
consensus_6256#0 CACGCTGGCCGGCTCCCCGAAAGCTACCGTGCAGGCGGCCCTCGGACCGGCCGCCCTCGA 1080
consensus_6256#1 CACGCTGGCCGGCTTCCCGAAAGCTACCGTGCAGGCGGCCCTCGGACCGGCCGCCCTCGA 212
************** *********************************************
consensus_6256#0 TCTTGCCCGCAGCGTGAACGCGACGGACGAGTACGGCCGGGCGCAGACCGTGCTGATCGT 1140
consensus_6256#1 TCTTGCCCGCAGCGTGAACGCGACGGACGAGTACGGCCGGGCGCAGACCGTGCTGATCGT 272
************************************************************
consensus_6256#0 GACGGTGCTGGCGATCATACTGACTGCACCACTAGGCGCACTGCTCATGATCAAGCTGGC 1200
consensus_6256#1 GACGGTGCTGGCGATCATACTGACTGCACCACTAGGCGCACTGCTCATGATCAAGCTGGC 332
************************************************************
consensus_6256#0 CCCGCGCTGGCTAAAGCGATCGACCGACGAGCGGACGGACCAGTACAGCTGACAGGGGGT 1260
consensus_6256#1 CCCGCGCTGGCTAAAGCGATCGACCGACGAGCGGACGGACCAGTACAGCTGACAGGGGGT 392
************************************************************
consensus_6256#0 GGGGTGAAGGTGTATGGTGTAAAGATAGTGACTTAAGGTGCTGGTACTTGCTGACCCGTT 1320
consensus_6256#1 GGGGTGAAGGTGTATGGTGTAAAGATAGTGACTTAAGGTGCTGGTACTTGCTGACCCGTT 452
************************************************************
consensus_6256#0 TTTACTTAACAATGTGACCCAATGTTAGGATTTAGTTTGATCGACTTAGACTTACGTTGT 1380
consensus_6256#1 TTTACTTAACAATGTGACCCAATGTTAGGATTTAGTTTGATCGACTTAGACTTACGTTGT 512
************************************************************
consensus_6256#0 TACTTAATTGATCGTGCAAAGTGTGCCTTTACTCGAGCAAGTGTGAATCTTCAAGACAAT 1440
consensus_6256#1 TACTTAATTGATCGTGCAAAGTGTGCCTTTACTC-------------------------- 546
**********************************
consensus_6256#0 CT 1442
consensus_6256#1 --
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||