These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6257#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 688 fasta sequence [CCGCCCACGCGTCCGGTTGATCTTAAGACGAAAGGACGCCCAAAGGAAAACCCCCCTCTGTGTGTGTGTGTGTGTCAGTTTTATGGTGATTTTTGTTTGTTTGTTTGTTTTTGTCCTGATCCAGAAGGGAACCACTTCGATTGGTGGCAGCCTCGAGAGTTCCGTTACGACCTCGGGTTGTAGTTTGGTCTGAGCAGGCGGCGACACCCGTTGACGGAGGAGTGCAAAAGCGAAGTGAAAAGCGAAAGCCAAGTCTACACCCACCCCGCCCCAAAGATGGGACGGCACCCTCTGTCCCTAGTGATGGTGGTCCTAGCGATCATGCTGCTGCCGTACGGCTACACCTGGAAGGAGTACCGGATACGGCGCAGCATCGATCTGTCCGCCGCGAATCCACTGATCTCCGACACGAAGCTGCCGACCGATCTGGTCCCGTCCGGATACAGCCTCCATCTGCACCCGGTGCTGGACCGGTCGATCTTCTCCGGGCGCGTCAACATTACGCTGCTGTGCGCGAAGGCCACCAATCAGATCAACCTGCACGCCCACCACGACCTG-ACCGTGGACGAGCTCGAGCTGGAGGTGGTGCGGATCGGA-GAAGCCGAGGGCGGCACCAAGGTGCCGATAAGGCGCGTCGACCGCGTGCCGAAGAAGCCGCTGCTCGTGATCTACTTCCACGATGCGCTGA] [+] EMBL BM624523 [CCGCCCACGCGTCCGGTTGATCTTAAGACGAAAGGACGCCCAAAGGAAAACCCCCCTCTGTGTGTGTGTGTGTGTCAGTTTTATGGTGATTTTTGTTTGTTTGTTTGTTTTTGTCCTGATCCAGAAGGGAACCACTTCGATTGGTGGCAGCCTCGAGAGTTCCGTTACGACCTCGGGTTGTAGTTTGGTCTGAGCAGGCGGCGACACCCGTTGACGGAGGAGTGCAAAAGCGAAGTGAAAAGCGAAAGCCAAGTCTACACCCACCCCGCCCCAAAGATGGGACGGCACCCTCTGTCCCTAGTGATGGTGGTCCTAGCGATCATGCTGCTGCCGTACGGCTACACCTGGAAGGAGTACCGGATACGGCGCAGCATCGATCTGTCCGCCGCGAATCCACTGATCTCCGACACGAAGCTGCCGACCGATCTGGTCCCGTCCGGATACAGCCTCCATCTGCACCCGGTGCTGGACCGGTCGATCTTCTCCGGGCGCGTCAACATTACGCTGCTGTGCGCGAAGGCCACCAATCAGATCAACCTGCACGCCCACCACGACCTG ACCGTGGACGAGCTCGAGCTGGAGGTGGTGCGGATCGGA GAAGCCGAGGGCGGCACCAAGGTGCCGATAAGGCGCGTCGACCGCGTGCCGAAGAAGCCGCTGCTCGTGATCTACTTCCACGATGCG ] [+] EMBL BM592059 [ CCGGTTGATCTTAAGACGAAAGGACGCCCAAAGGAAAACCCCCCTCTGTGTGTGTGTGTGTGTCAGTTTTATGGTGATTTTTGTTTGTTTGTTTGTTTTTGTCCTGATCCAGAAGGGAACCACTTCGATTGGTGGCAGCCTCGAGAGTTCCGTTACGACCTCGGGTTGTAGTTTGGTCTGAGCAGGCGGCGACACCCGTTGACGGAGGAGTGCAAAAGCGAAGTGAAAAGCGAAAGCCAAGTCTACACCCACCCCGCCCCAAAGATGGGACGGCACCCTCTGTCCCTAGTGATGGTGGTCCTAGCGATCATGCTGCTGCCGTACGGCTACACCTGGAAGGAGTACCGGATACGGCGCAGCATCGATCTGTCCGCCGCGAATCCACTGATCTCCGACACGAAGCTGCCGACCGATCTGGTCCCGTCCGGATACAGCCTCCATCT ] [+] EMBL BM624438 [ ccgGATCTTAAGACGAAAGGACGCCCAAAGGAAAACCCCCCTCTGTGTGTGTGTGTGTGTCAGTTTTATGGTGATTTTTGTTTGTTTGTTTGTTTTTGTCCTGATCCAGAAGGGAACCACTTCGATTGGTGGCAGCCTCGAGAGTTCCGTTACGACCTCGGGTTGTAGTTTGGTCTGAGCAGGCGGCGACACCCGTTGACGGAGGAGTGCAAAAGCGAAGTGAAAAGCGAAAGCCAAGTCTACACCCACCCCGCCCCAAAGATGGGACGGCACCCTCTGTCCCTAGTGATGGTGGTCCTAGCGATCATGCTGCTGCCGTACGGCTACACCTGGAAGGAGTACCGGATACGGCGCAGCATCGATCTGTCCGCCGCGAATCCACTGATCTCCGACACGAAGCTGCCGACCGATCTGGTCCCGTCCGGATACAGCCTCCATCTGCACCCGGTGCTGGACCGGTCGATCTTCTCCGGGCGCGTCAACATTACGCTGCTGTGCGCGAAGGCCACCAATCAGATCAACCTGCACGCCCACCACGACCTG ACCGTGGACGAGCTCGAGCTGGAGGTGGTGCGGATCGGA AAAGCCGAGGGCGGCACCAAGGTGCCGATAAGGCGCGTCGACCGCGTGCCGAAG AGCCGCTGCTCGTGATCTACTTCCACGATGCGCTGA] [+] EMBL BM621879 [ ccgCTTAAGACGAAAGGACGCCCAAAGGAAAACCCCCCTC TGTGTGTGTGTGTGTCAGTTTTATGGTGATTTTTGTTTGTTTGTTTGTTTTTGTCCTGATCCAGAAGGGAACCACTTCGATTGGTGGCAGCCTCGAGAGTTCCGTTACGACCTCGGGTTGTAGTTTGGTCTGAGCAGGCGGCGACGCCCGTTGACGGAGGAGTGCAAAAGCGAAGTGAAAAGCGAAAGCCAAGTCTACACCCACCCCGCCCCAAAGATGGGACGGCACCCTCTGTCCCTGGTGATGGTGGTCCTAGCGATCATGCTGCTGCCGTACGGCTACACCTGGAAGGAGTACCGGATACGGCGCAGCATCGATCTGTCCGCCGCGAATCCACTGATCTCCGACACGAAGCTGCCGACCGATCTGGTCCCGTCCGGATACAGTCTCCATCTGCACCCGGTGCTGGACCGGTCGATCTTCTCCGGGCGCGTCAACATTACGCTGCTGTGCGCGAAGGCCACCAATCAGATCAACCTGCACGCCCACCACGACCTGCACCGTGGACGAGCTCGAGCTGGAGGTGGTGCGGATCGGAGGAAGCCGAGGGCGGCACCAAGGTGCCGATAAGGCGCGTCGACCGCGTGCCGAAGA ] consensusID : consensus_6257#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 462 fasta sequence [CCGCCCACGCGTCCGGGGCGCGTCAACATTACGCTGCTGTGCGCGAAGGCCACCAATCAGATCAACCTGCACGCCCACCACGACCTGACCGTGGACGAGCTCGAGCTGGAGGTGGTGCGGATCGGAGGAGCCGAGGGCGGCACCAAGGTGCCGATAAGGCGCGTCGACCGCGTGCCGAAGAAGCCGCTGCTCGTGATCTACTTTCACGATGCGCTGACCGCCGGGGCGGCGTACGAGGTGCGGCTCCGCTTTGTCGGCAACATCTGGGAGAACGTGGAGGGCATCTTCGAGGGCAAGTACAAGCAGCAGCAATCGGCGGGTCCATCGGAGCCAGCGGGCACGGAATCGGAAGGTGTGACCGAGCCCGAGGAACATTCGTTCATCGGCACGTACTTCCGGCCGCACCATGCACGGCGCGTGTTTCCCTGCTTCGATGAACCGTCGTACAAGGTGCCGTTCAAT] [+] EMBL BM637655 [CCGCCCACGCGTCCGGGGCGCGTCAACATTACGCTGCTGTGCGCGAAGGCCACCAATCAGATCAACCTGCACGCCCACCACGACCTGACCGTGGACGAGCTCGAGCTGGAGGTGGTGCGGATCGGAGGAGCCGAGGGCGGCACCAAGGTGCCGATAAGGCGCGTCGACCGCGTGCCGAAGAAGCCGCTGCTCGTGATCTACTTTCACGATGCGCTGACCGCCGGGGCGGCGTACGAGGTGCGGCTCCGCTTTGTCGGCAACATCTGGGAGAACGTGGAGGGCATCTTCGAGGGCAAGTACAAGCAGCAGCAATCGGCGGGTCCATCGGAGCCAGCGGGCACGGAATCGGAAGGTGTGACCGAGCCCGAGGAACATTCGTTCATCGGCACGTACTTCCGGCCGCACCATGCACGGCGCGTGTTTCCCTGCTTCGATGAACCGTCGTACAAGGTGCCGTTCAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6257#0 CCGCCCACGCGTCCGGTTGATCTTAAGACGAAAGGACGCCCAAAGGAAAACCCCCCTCTG 60 consensus_6257#1 ------------------------------------------------------------ consensus_6257#0 TGTGTGTGTGTGTGTCAGTTTTATGGTGATTTTTGTTTGTTTGTTTGTTTTTGTCCTGAT 120 consensus_6257#1 -------------------CCGCCCACGCGTCCGGGGCGCGTCAACATTACGCTGCTGTG 41 * * * * * ** * *** consensus_6257#0 CCAGAAGGGAACCACTTCGATTGGTGGCAGCCTCGAGAGTTCCGTTACGACCTCGGGTTG 180 consensus_6257#1 CGCGAAGGCCACCAATCAGAT------CAACCT--GCACGCCCACCACGACCT--GACCG 91 * ***** **** * *** ** *** * ** ******* * * consensus_6257#0 TAGTTTGGTCTGAGCAGGCGGCGACACCCGTTGACGGAGGAGTGCAAAAGCGAAGTGAAA 240 consensus_6257#1 TGGACGAGCTCGAGCTGGAGGTGGTGCGGAT---CGGAGGAGC-CGAGGGCGGCACCAAG 147 * * * **** ** ** * * * ******** * * *** ** consensus_6257#0 AGCGAAAGCCAAGTCTACACCCACCCCGCCCCAAAGATGGGACGGCACCCTCTGTCCCTA 300 consensus_6257#1 -GTGCCGATAAGG--CGCGTCGACCGCGTGCCGAAGA--AGCCGCTGCTCGTGATCTACT 202 * * * * * * *** ** ** **** * ** * * ** consensus_6257#0 GTGATGGTGGTCCTAGCGATCATGCTGC---TGCCGTACGGCTACACCTGGAAGG-AGTA 356 consensus_6257#1 TTCACGATGCGCTGACCGCCGGGGCGGCGTACGAGGTGCGGCTCCGCTTTGTCGGCAACA 262 * * * ** * * ** ** ** * ** ***** * * * * ** * * consensus_6257#0 CCGGATACGGCGCAGCATCGATCTGTCCGCCGCGAATCCACTGATCTCCGACACGAAGCT 416 consensus_6257#1 TCTGGGAGAACGTGGAGGGCATCT-TCGAGGGCAAGTACAAG------CAGCAGCAATCG 315 * * * ** * **** ** ** * * ** * ** ** * consensus_6257#0 GCCGACCGATCTGGTCCCGTCCGGATACAGCCTCCATCTGCACCCGGTGCTG--GACCGG 474 consensus_6257#1 GCGGGTCCATCGGAGCCAGCGGGCACGGAATCGGAAGGTGTGACCGAGCCCGAGGAACAT 375 ** * * *** * ** * * * * * * ** *** * * ** * consensus_6257#0 TCGATCTTCTCCGGGCGCGTC-AACATTACGCTGCTGTGCGCGAAGGCCACCAATCAGAT 533 consensus_6257#1 TCGTTCATCGGCACGTACTTCCGGCCGCACCATGCACGGCGCGTGTTTCCCTGCTTCGAT 435 *** ** ** * * * ** * ** *** ***** * * * *** consensus_6257#0 CAACCTGCACGCCCACCACGACCTGACCGTGGACGAGCTCGAGCTGGAGGTGGTGCGGAT 593 consensus_6257#1 GAACCGTCGTACAAGGTGCCGTTCAAT--------------------------------- 462 **** * * * * consensus_6257#0 CGGAGAAGCCGAGGGCGGCACCAAGGTGCCGATAAGGCGCGTCGACCGCGTGCCGAAGAA 653 consensus_6257#1 ------------------------------------------------------------ consensus_6257#0 GCCGCTGCTCGTGATCTACTTCCACGATGCGCTGA 688 consensus_6257#1 ----------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||