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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6262#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 830 fasta sequence
[CCGGCAGCAGCACGATCGTTCTCGTTGTTCGCCACTGACGGCGCAACGGTGTAGGTTAATCATGCTTGTTTTAGCTCACAGTAGGATAGGATAAAAATCTGTTTCCACCTTCCTTCCCGTTCGTTTCTTACATGCCCAACGGGTTGGCCAGTTTACTTTTTGCTGTCCCAGTGTGTTGTAGAACGCATGAGATGCGCCTGTCTTTTGTGTGTGTGTGTGTGTAATGTGCCACACCCCGAAGCGATGATGAGATCCTGGTTTGGATCATTTACATACTTCGTTTCGTTAGTAGTGCATTTTAAGCGTGTTACAGTAGGTGGGTGTAGGATATGCTTCCCATAGTCCATTGTTACGGCTGTATCTTTTTGCTTTTAGGGCATTTAACAACGGCAATGGCACGAAGCAGACAGCTGAATATAGAGCTACCTTCGCTTGTTTGAGTAACTGAACCTAAGCACACACGCGCAATGGTTCGAGTGGTTCCCTTTTTCCTCCCACCGAGACAAAGCAACAGCACTTTTACACCCAGTCGCGAGATGCATCGAACCATATCATCATTCGATGTGGGGATGCAGCAGAAGTGCGCTTTTGGATGAAAGTTGCAACGAAAAGCTCGAACCACCACCTGTATGCGTGTATGAGTGTGTGTGTGTTTGAAAACATTCCGCGGCAGGGTGAACGAGTGTTCGGTTCAGAGAATTCGGTTCGCCGCGTGTGCTAATACTCTCACTCACTCACTCTTCGTGTCTCTAGCGGTTTGTCCAGCGTTTGGAGCGTCAAACGCCACAGAGGACAAAACAGTGTTTTTAACTCGTTTGGTAACCTCGTGA]
[+] EMBL BM651665 [CCGGCAGCAGCACGATCGTTCTCGTTGTTCGCCACTGACGGCGCAACGGTGTAGGTTAATCATGCTTGTTTTAGCTCACAGTAGGATAGGATAAAAATCTGTTTCCACCTTCCTTCCCGTTCGTTTCTTACATGCCCAACGGGTTGGCCAGTTTACTTTTTGCTGTCCCAGTGTGTTGTAGAACGCATGAGATGCGCCTGTCTTTTGTGTGTGTGTGTGTGTAATGTGCCACACCCCGAAGCGATGATGAGATCCTGGTTTGGATCATTTACATACTTCGTTTCGTTAGTAGTGCATTTTAAGCGTGTTACAGTAGGTGGGTGTAGGATATGCTTCCCATAGTCCATTGTTACGGCTGTATCTTTTTGCTTTTAGGGCATTTAACAACGGCAATGGCACGAAGCAGACAGCTGAATATAGAGCTACCTTCGCTTGTTTGAGTAACTGAACCTAAGCACACACGCGCAATGGTTCGAGTGGTTCCCTTTTTCCTCCCACCGAGACAAAGCAACAGCACTTTTACACCCAGTCGCGAGATGCATCGAACCATATCATCATTCGATGTGGGGATGCAGCAGAAGTGCGCTTTTGGATGAAAGTTGCAACGAAAAGCTCGAACCACCACCTGTATGCGTGTATGAGTGTG ]
[+] EMBL BM586768 [ ccgGTTGTAGAACGCATGAGATGCGCCTGTCTTTTGTGTGTGTGTGTGTGTAATGTGCCACACCCCGAAGCGATGATGAGATCCTGGTTTGGATCATTTACATACTTCGTTTCGTTAGTAGTGCATTTTAAGCGTGTTACAGTAGGTGGGTGTAGGATATGCTTCCCATAGTCCATTGTTACGGCTGTATCTTTTTGCTTTTAGGGCATTTAACAACGGCAATGGCACGAAGCAGACAGCTGAATATAGAGCTACCTTCGCTTGTTTGAGTAACTGAACCTAAGCACACACGCGCAATGGTTCGAGTGGTTCCCTTTTTCCTCCCACCGAGACAAAGCAACAGCACTTTTACACCCAGTCGCGAGATGCATCGAACCATATCATCATTCGATGTGGGGATGCAGCAGAAGTGCGCTTTTGGATGAAAGTTGCAACGAAAAGCTCGAACCACCACCTGTATGCGTGTATGAGTGTGTGTGTGTTTGAAAACATTCCGCGGCAGGGTGAACGAGTGTTCGGTTCAGAGAATTCGGTTCGCCGCGTGTGCTAATACTCTCACTCACTCACTCTTCGTGTCTCTAGCGGTTTGTCCAGCGTTTGGAGCGTCAAACGCCACAGAGGACAAAACAGTGTTTTTAACTCGTTTGGTAACCTCGTGA]
consensusID : consensus_6262#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 691 fasta sequence
[TGGTGGGAAGGAAAACACTTTCAACCGGACGTTAGACTGCTTCTCGCATTTAAAAGGGGCGTAATATGGCAAGCGCGGCAAGCGAGAACACAGGCAAGGAATCAAAAATGTGTATGCGTGTGAATCAGCGCCACCGGCTTGCTGGATTAGTGTAAGCGAAACGATTTAGGCTTAAGCAAGGATAATTGAGGCATCTGGCGTAAACGGAGCAGCGCGTGAATTTACACCGCTACAAACATACACACACGTACCCCCTCTTACATTACAGCGAAGACACGGCGCAGGACACGAGTATAGCAGAAGTGCGCTTTTGGATGAAAGTTGCAACGAAAAGCTCGAACCACCACCTGTATGCGTGTATGAGTGTGTGTGTTTGAAAACATTCCGCGGCAAGGTGAACGAGTGAATCGGCACAAAATTGTTTGTTCGAACCCGTGATACAGAGAATTCGGTTCGCCTCACTCACTCACTCACTCTTCGTGTCTCTAGCCGTTTGTCCAGCGTTTGGAGCGTCAAACGCCACAGAGGACAAAACAGTGTTTTTAACTCGTTTGTTAACCTCGTGAACATAATTGCTTCTAATATACGCTAGCTAAACCTGAAGGCGTTACATAGTGTTACATAAAGTAAAGCGTAATTGCATTCGCTAACGGCCAGCGTGTAGTGCGCTTTCTGTTCGCCATTCGCTAGC]
[+] EMBL BX617832 [TGGTGGGAAGGAAAACACTTTCAACCGGACGTTAGACTGCTTCTCGCATTTAAAAGGGGCGTAATATGGCAAGCGCGGCAAGCGAGAACACAGGCAAGGAATCAAAAATGTGTATGCGTGTGAATCAGCGCCACCGGCTTGCTGGATTAGTGTAAGCGAAACGATTTAGGCTTAAGCAAGGATAATTGAGGCATCTGGCGTAAACGGAGCAGCGCGTGAATTTACACCGCTACAAACATACACACACGTACCCCCTCTTACATTACAGCGAAGACACGGCGCAGGACACGAGTATAGCAGAAGTGCGCTTTTGGATGAAAGTTGCAACGAAAAGCTCGAACCACCACCTGTATGCGTGTATGAGTGTGTGTGTTTGAAAACATTCCGCGGCAAGGTGAACGAGTGAATCGGCACAAAATTGTTTGTTCGAACCCGTGATACAGAGAATTCGGTTCGCCTCACTCACTCACTCACTCTTCGTGTCTCTAGCCGTTTGTCCAGCGTTTGGAGCGTCAAACGCCACAGAGGACAAAACAGTGTTTTTAACTCGTTTGTTAACCTCGTGAACATAATTGCTTCTAATATACGCTAGCTAAACCTGAAGGCGTTACATAGTGTTACATAAAGTAAAGCGTAATTGCATTCGCTAACGGCCAGCGTGTAGTGCGCTTTCTGTTCGCCATTCGCTAGC]
consensusID : consensus_6262#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 681 fasta sequence
[CCGAAAAATCTGTTTCCCCCTTCCTTCCCGTTCGTTTCTTACATGCCCAACGGGTTGGCCAGTTTACTTTTTGCTGTCCCAGTGTGTTGTAGAACGCATGAGATGCGCCTGTCTTTTGTGTGTGTGTGTGTAATGTGCCACACCCCGAAGCGATGATGAGATCCTGGTTTGGATCATTTACATACTTCGTTTCGTTAGTAGTGCATTTGAAGCGTGTTACAGTAGGTGGGTGTAGGATATGCTTCCCATAGTCCATTGTTACGGCTGTATCTTTTTGCTTTTAGGGCATTTAACAACGGCAATGGCACGAAGCAGACAGCTGAATATAGAGCTACCTTCGCTTGTTTGAGTAACTGAACCTAAGCACACACGCGCAGTGGTTCGAGTGGTTCCCTTTTTCCTCCCACCGAGACAAAGCAACAGCACTTTTACACCCAGTCGCGAGATGCATCGAACCATATCATCATTCGATGTGGGGATGCAGCAGAAGTGCGCTTTTGGATGAAAGTTGCAACGAAAAGCTCGAACCACCACCTGTATGCGTGTATGGGTGTGTGTGTTTGAAAACATTCCGCGGCAAGGTGAACGAGTGAATCGGCACAAAATTGTTTGTTCGAACCCGTGATACAGAGAATTCGGTTCGCCGCGTGTGCTAATACTCTCACTCGCTCACTCTTCGTG]
[+] EMBL BM586929 [CCGAAAAATCTGTTTCCCCCTTCCTTCCCGTTCGTTTCTTACATGCCCAACGGGTTGGCCAGTTTACTTTTTGCTGTCCCAGTGTGTTGTAGAACGCATGAGATGCGCCTGTCTTTTGTGTGTGTGTGTGTAATGTGCCACACCCCGAAGCGATGATGAGATCCTGGTTTGGATCATTTACATACTTCGTTTCGTTAGTAGTGCATTTGAAGCGTGTTACAGTAGGTGGGTGTAGGATATGCTTCCCATAGTCCATTGTTACGGCTGTATCTTTTTGCTTTTAGGGCATTTAACAACGGCAATGGCACGAAGCAGACAGCTGAATATAGAGCTACCTTCGCTTGTTTGAGTAACTGAACCTAAGCACACACGCGCAGTGGTTCGAGTGGTTCCCTTTTTCCTCCCACCGAGACAAAGCAACAGCACTTTTACACCCAGTCGCGAGATGCATCGAACCATATCATCATTCGATGTGGGGATGCAGCAGAAGTGCGCTTTTGGATGAAAGTTGCAACGAAAAGCTCGAACCACCACCTGTATGCGTGTATGGGTGTGTGTGTTTGAAAACATTCCGCGGCAAGGTGAACGAGTGAATCGGCACAAAATTGTTTGTTCGAACCCGTGATACAGAGAATTCGGTTCGCCGCGTGTGCTAATACTCTCACTCGCTCACTCTTCGTG]
consensusID : consensus_6262#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 516 fasta sequence
[CGGGCTCACGATCTGCTGAAGTAAGCTGTTTACACACCAACCCAACTCACTCGAAGCGGTGTAACCCGTTGCGATGGAGGGATGTTAGACGTCACAGACAACGCGGGCGGGNCAGGAACTGAGCAGTGTAAACTTGGTTGGTTTTTGTTCTCGTTACTGTTGATGTGCAGTTTTGTTCGCAGCTGGAAAGCGCCAACCGCCAACCCACGGCAGGTGCGCTTGAGAATAACCACGAAATCCACCTATTGAGTTTGAGTTTTACAGCAAAGCGGGTTCGATCAGTGGACATGAAAACATATACACAATACACATATACACACAAACACACACTGGAGCAATTGTATGGTGGGAAGGAAAACACTTTCAACCGGACGTTAGACTGCTTCTCGCATTTAAAAGGGGCGTAATATGGCAAGCGCGGCAAGCGAGAACACAGGCAAGGAATCAAAAATGTGTATGCGTGTGAATCAGCGCCACCGGCTTGCTGGATTAGTGTAAGCGANAANANCCTCGGCG]
[-] EMBL AL694283 [CGGGCTCACGATCTGCTGAAGTAAGCTGTTTACACACCAACCCAACTCACTCGAAGCGGTGTAACCCGTTGCGATGGAGGGATGTTAGACGTCACAGACAACGCGGGCGGGNCAGGAACTGAGCAGTGTAAACTTGGTTGGTTTTTGTTCTCGTTACTGTTGATGTGCAGTTTTGTTCGCAGCTGGAAAGCGCCAACCGCCAACCCACGGCAGGTGCGCTTGAGAATAACCACGAAATCCACCTATTGAGTTTGAGTTTTACAGCAAAGCGGGTTCGATCAGTGGACATGAAAACATATACACAATACACATATACACACAAACACACACTGGAGCAATTGTATGGTGGGAAGGAAAACACTTTCAACCGGACGTTAGACTGCTTCTCGCATTTAAAAGGGGCGTAATATGGCAAGCGCGGCAAGCGAGAACACAGGCAAGGAATCAAAAATGTGTATGCGTGTGAATCAGCGCCACCGGCTTGCTGGATTAGTGTAAGCGANAANANCCTCGGCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6262#1 ---------------------------------TGGTGGGAAGGAAAACACTTTCAACCG 27
consensus_6262#3 ------------------------------------------------------------
consensus_6262#0 CCGGCAGCAGCACGATCGTTCTCGTTGTTCGCCACTGACGGCGCAACGGTGTAGGTTAAT 60
consensus_6262#2 ------------------------------------------------------------
consensus_6262#1 GACGTTAGACTGCTTCTCGCATTTAAAAGGGGCGTAATATGGCAAGCGCGGCAAGCGAGA 87
consensus_6262#3 -------------------------------------------------------CGGGC 5
consensus_6262#0 CATGCTTGTTTTAGCTCACAGTAGGATAGGATAAAAATCTGTTTCCACCTTCCTTCCCGT 120
consensus_6262#2 -----------------------------CCGAAAAATCTGTTTCCCCCTTCCTTCCCGT 31
* *
consensus_6262#1 ACACAGGCAAGGAATCAAAAATGTGTATGCGTGTGAATCA-GCGCCACCGGCTTGCTG-G 145
consensus_6262#3 TCACGATCTGCTGAAGTAAGCTGTTTACACAC-CAACCCA-ACTCACTCGAAGCGGTGTA 63
consensus_6262#0 TCGTTTCTTACATGCCCAACGGGTTGGCCAGTTTACTTTTTGCTGTCCCAGTGTGTTGTA 180
consensus_6262#2 TCGTTTCTTACATGCCCAACGGGTTGGCCAGTTTACTTTTTGCTGTCCCAGTGTGTTGTA 91
* ** ** * * * **
consensus_6262#1 ATTAGT-GTAAGCGAAACGAT-TTAGGCTTAAGCAAGGATAATTGAGGCATCTGGCGTAA 203
consensus_6262#3 ACCCGT-TGCGATGGAGGGATGTTAGACGT---CACAGACAACGCGGGCGG--GNCAGGA 117
consensus_6262#0 GAACGCATGAGATGCGCCTGTCTTTTGTGTGTGTGTGTGTGTAATGTGCCACACCCCGAA 240
consensus_6262#2 GAACGCATGAGATGCGCCTGTCTTTTGTGTGTGTGTGTGT--AATGTGCCACACCCCGAA 149
* * * ** * ** * *
consensus_6262#1 ACGGAGCAGCGCG-TGAATTTACACCGCTACAAACATACACACACGT-AC-CCCCTCTTA 260
consensus_6262#3 ACTGAGCAGTG---TAAACTTGGTTGGTTTTTGTTCTCGTTACTGTTGAT-GTGCAGTTT 173
consensus_6262#0 GCGATGATGAGATCCTGGTTTGGATCATTTACATACTTCGTTTCGTTAGTAGTGCATTTT 300
consensus_6262#2 GCGATGATGAGATCCTGGTTTGGATCATTTACATACTTCGTTTCGTTAGTAGTGCATTTG 209
* * * * ** * * * * **
consensus_6262#1 CATT--ACAGCGAAGACACGGCGCAGGACACGAGTATAGCAGAAGTGCGCTTTTGGATGA 318
consensus_6262#3 TGTTC-GCAGCTGGAA---AGCGCCAACCGCCAACCCACGGCAGGTGCGCTTGAGAATAA 229
consensus_6262#0 AAGCGTGTTACAGTAGGTGGGTGTAGGATAT--GCTTCCCATAGTCCATTGTTACGGCTG 358
consensus_6262#2 AAGCGTGTTACAGTAGGTGGGTGTAGGATAT--GCTTCCCATAGTCCATTGTTACGGCTG 267
* * * * *
consensus_6262#1 ----AAGTTGCAACGAAAAGCTCGAACCACCACCTGTATGCGTGTATGAGTGTGTGTGTT 374
consensus_6262#3 CCACGAAATCCACCTATTGAGTTTGAGTTTTACAGCAAAGCGGGTTCGATCA-GTGGACA 288
consensus_6262#0 TATCTTTTTGCTTTTAGGGCATTTAACAACGGCAATGGCACGAAGCAGA-CAGCTGAATA 417
consensus_6262#2 TATCTTTTTGCTTTTAGGGCATTTAACAACGGCAATGGCACGAAGCAGA-CAGCTGAATA 326
* * * * * * ** ** **
consensus_6262#1 TGAAAACAT-TCCGCG-GCA-AGGTGAACGAGTGAATCGGCACAAAATTGTTTGTTCGAA 431
consensus_6262#3 TGAAAACATATACACA-ATACACATATACACACAAACACACACTGGAGCAATTGTATG-- 345
consensus_6262#0 TAGAGCTACCTTCGCTTGTTTGAGTAACTGAACCTAAGCACACACGCGCAATGGTTCGA- 476
consensus_6262#2 TAGAGCTACCTTCGCTTGTTTGAGTAACTGAACCTAAGCACACACGCGCAGTGGTTCGA- 385
* * * * * * * * *** * ** *
consensus_6262#1 CCCGTGATACAGAGAATTCGGTTCGCCTCACTCACTCACTCACTCTTCGTGTCTCTAGCC 491
consensus_6262#3 ---GTGGGAAGGAAAACACTTTCAACCGGAC--GTTAGACTGCTTCTCGCATTTAAAAGG 400
consensus_6262#0 ---GTGGTTCCCTTTTTCCTCCCACCGAGACAAAGCAACAGCACTTTTACACCCAGTCGC 533
consensus_6262#2 ---GTGGTTCCCTTTTTCCTCCCACCGAGACAAAGCAACAGCACTTTTACACCCAGTCGC 442
*** * * ** *
consensus_6262#1 GTTTGTCCAGCGTTTGGAGCGTCAAACGC---CACAGAGGACAAAACAGTGTTTTTAACT 548
consensus_6262#3 GGC-GTAATATGGCAAGCGCGGCAAGCGAGAACACAGGCAAGGAATCAAAAATGTGTATG 459
consensus_6262#0 GAGATGCATCGAACCATATCATCATTCGA---TGTGGG-GATGCAGCAGAAGTGCGCTTT 589
consensus_6262#2 GAGATGCATCGAACCATATCATCATTCGA---TGTGGG-GATGCAGCAGAAGTGCGCTTT 498
* * ** ** * * * ** *
consensus_6262#1 CGTTTG----TTAACCTCGTGAACATAATTGCTTCTAATATACGCT-AGCTAAACCTGAA 603
consensus_6262#3 CGTGTGAA--TCAGCGCCACCGGCTTGCTGGATT--AGTGTAAGCG-ANAANANCCTCGG 514
consensus_6262#0 TGGATGAAAGTTGCAACGAAAAGCTCGAACCACCA-CCTGTATGCGTGTATGAGTGTGTG 648
consensus_6262#2 TGGATGAAAGTTGCAACGAAAAGCTCGAACCACCA-CCTGTATGCGTGTATGGGTGTGTG 557
* ** * * * ** ** *
consensus_6262#1 GGCGTTACATAGTGTTACATAAAGTAAAGCGTAATTGCATTCGCTAACGGCCAGCGTGTA 663
consensus_6262#3 CG---------------------------------------------------------- 516
consensus_6262#0 TGTGTTTGAAAACATTCCGCGGCAGGGTGAACGAGTG--------------------TTC 688
consensus_6262#2 TGT--TTGAAAACATTCCGCGGCAAGGTGAACGAGTGAATCGGCACAAAATTGTTTGTTC 615
*
consensus_6262#1 GTGCGCTTTCTGTTCGCCATTCGCTAGC-------------------------------- 691
consensus_6262#3 ------------------------------------------------------------
consensus_6262#0 GG--------TTCAGAGAATTCGGTTCGCCGCGTGTGCTAATACTCTCACTCACTCACTC 740
consensus_6262#2 GAACCCGTGATACAGAGAATTCGGTTCGCCGCGTGTGCTAATACTCTCACTCGCTCACTC 675
consensus_6262#1 ------------------------------------------------------------
consensus_6262#3 ------------------------------------------------------------
consensus_6262#0 TTCGTGTCTCTAGCGGTTTGTCCAGCGTTTGGAGCGTCAAACGCCACAGAGGACAAAACA 800
consensus_6262#2 TTCGTG------------------------------------------------------ 681
consensus_6262#1 ------------------------------
consensus_6262#3 ------------------------------
consensus_6262#0 GTGTTTTTAACTCGTTTGGTAACCTCGTGA 830
consensus_6262#2 ------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||