These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6262#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 830 fasta sequence [CCGGCAGCAGCACGATCGTTCTCGTTGTTCGCCACTGACGGCGCAACGGTGTAGGTTAATCATGCTTGTTTTAGCTCACAGTAGGATAGGATAAAAATCTGTTTCCACCTTCCTTCCCGTTCGTTTCTTACATGCCCAACGGGTTGGCCAGTTTACTTTTTGCTGTCCCAGTGTGTTGTAGAACGCATGAGATGCGCCTGTCTTTTGTGTGTGTGTGTGTGTAATGTGCCACACCCCGAAGCGATGATGAGATCCTGGTTTGGATCATTTACATACTTCGTTTCGTTAGTAGTGCATTTTAAGCGTGTTACAGTAGGTGGGTGTAGGATATGCTTCCCATAGTCCATTGTTACGGCTGTATCTTTTTGCTTTTAGGGCATTTAACAACGGCAATGGCACGAAGCAGACAGCTGAATATAGAGCTACCTTCGCTTGTTTGAGTAACTGAACCTAAGCACACACGCGCAATGGTTCGAGTGGTTCCCTTTTTCCTCCCACCGAGACAAAGCAACAGCACTTTTACACCCAGTCGCGAGATGCATCGAACCATATCATCATTCGATGTGGGGATGCAGCAGAAGTGCGCTTTTGGATGAAAGTTGCAACGAAAAGCTCGAACCACCACCTGTATGCGTGTATGAGTGTGTGTGTGTTTGAAAACATTCCGCGGCAGGGTGAACGAGTGTTCGGTTCAGAGAATTCGGTTCGCCGCGTGTGCTAATACTCTCACTCACTCACTCTTCGTGTCTCTAGCGGTTTGTCCAGCGTTTGGAGCGTCAAACGCCACAGAGGACAAAACAGTGTTTTTAACTCGTTTGGTAACCTCGTGA] [+] EMBL BM651665 [CCGGCAGCAGCACGATCGTTCTCGTTGTTCGCCACTGACGGCGCAACGGTGTAGGTTAATCATGCTTGTTTTAGCTCACAGTAGGATAGGATAAAAATCTGTTTCCACCTTCCTTCCCGTTCGTTTCTTACATGCCCAACGGGTTGGCCAGTTTACTTTTTGCTGTCCCAGTGTGTTGTAGAACGCATGAGATGCGCCTGTCTTTTGTGTGTGTGTGTGTGTAATGTGCCACACCCCGAAGCGATGATGAGATCCTGGTTTGGATCATTTACATACTTCGTTTCGTTAGTAGTGCATTTTAAGCGTGTTACAGTAGGTGGGTGTAGGATATGCTTCCCATAGTCCATTGTTACGGCTGTATCTTTTTGCTTTTAGGGCATTTAACAACGGCAATGGCACGAAGCAGACAGCTGAATATAGAGCTACCTTCGCTTGTTTGAGTAACTGAACCTAAGCACACACGCGCAATGGTTCGAGTGGTTCCCTTTTTCCTCCCACCGAGACAAAGCAACAGCACTTTTACACCCAGTCGCGAGATGCATCGAACCATATCATCATTCGATGTGGGGATGCAGCAGAAGTGCGCTTTTGGATGAAAGTTGCAACGAAAAGCTCGAACCACCACCTGTATGCGTGTATGAGTGTG ] [+] EMBL BM586768 [ ccgGTTGTAGAACGCATGAGATGCGCCTGTCTTTTGTGTGTGTGTGTGTGTAATGTGCCACACCCCGAAGCGATGATGAGATCCTGGTTTGGATCATTTACATACTTCGTTTCGTTAGTAGTGCATTTTAAGCGTGTTACAGTAGGTGGGTGTAGGATATGCTTCCCATAGTCCATTGTTACGGCTGTATCTTTTTGCTTTTAGGGCATTTAACAACGGCAATGGCACGAAGCAGACAGCTGAATATAGAGCTACCTTCGCTTGTTTGAGTAACTGAACCTAAGCACACACGCGCAATGGTTCGAGTGGTTCCCTTTTTCCTCCCACCGAGACAAAGCAACAGCACTTTTACACCCAGTCGCGAGATGCATCGAACCATATCATCATTCGATGTGGGGATGCAGCAGAAGTGCGCTTTTGGATGAAAGTTGCAACGAAAAGCTCGAACCACCACCTGTATGCGTGTATGAGTGTGTGTGTGTTTGAAAACATTCCGCGGCAGGGTGAACGAGTGTTCGGTTCAGAGAATTCGGTTCGCCGCGTGTGCTAATACTCTCACTCACTCACTCTTCGTGTCTCTAGCGGTTTGTCCAGCGTTTGGAGCGTCAAACGCCACAGAGGACAAAACAGTGTTTTTAACTCGTTTGGTAACCTCGTGA] consensusID : consensus_6262#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 691 fasta sequence [TGGTGGGAAGGAAAACACTTTCAACCGGACGTTAGACTGCTTCTCGCATTTAAAAGGGGCGTAATATGGCAAGCGCGGCAAGCGAGAACACAGGCAAGGAATCAAAAATGTGTATGCGTGTGAATCAGCGCCACCGGCTTGCTGGATTAGTGTAAGCGAAACGATTTAGGCTTAAGCAAGGATAATTGAGGCATCTGGCGTAAACGGAGCAGCGCGTGAATTTACACCGCTACAAACATACACACACGTACCCCCTCTTACATTACAGCGAAGACACGGCGCAGGACACGAGTATAGCAGAAGTGCGCTTTTGGATGAAAGTTGCAACGAAAAGCTCGAACCACCACCTGTATGCGTGTATGAGTGTGTGTGTTTGAAAACATTCCGCGGCAAGGTGAACGAGTGAATCGGCACAAAATTGTTTGTTCGAACCCGTGATACAGAGAATTCGGTTCGCCTCACTCACTCACTCACTCTTCGTGTCTCTAGCCGTTTGTCCAGCGTTTGGAGCGTCAAACGCCACAGAGGACAAAACAGTGTTTTTAACTCGTTTGTTAACCTCGTGAACATAATTGCTTCTAATATACGCTAGCTAAACCTGAAGGCGTTACATAGTGTTACATAAAGTAAAGCGTAATTGCATTCGCTAACGGCCAGCGTGTAGTGCGCTTTCTGTTCGCCATTCGCTAGC] [+] EMBL BX617832 [TGGTGGGAAGGAAAACACTTTCAACCGGACGTTAGACTGCTTCTCGCATTTAAAAGGGGCGTAATATGGCAAGCGCGGCAAGCGAGAACACAGGCAAGGAATCAAAAATGTGTATGCGTGTGAATCAGCGCCACCGGCTTGCTGGATTAGTGTAAGCGAAACGATTTAGGCTTAAGCAAGGATAATTGAGGCATCTGGCGTAAACGGAGCAGCGCGTGAATTTACACCGCTACAAACATACACACACGTACCCCCTCTTACATTACAGCGAAGACACGGCGCAGGACACGAGTATAGCAGAAGTGCGCTTTTGGATGAAAGTTGCAACGAAAAGCTCGAACCACCACCTGTATGCGTGTATGAGTGTGTGTGTTTGAAAACATTCCGCGGCAAGGTGAACGAGTGAATCGGCACAAAATTGTTTGTTCGAACCCGTGATACAGAGAATTCGGTTCGCCTCACTCACTCACTCACTCTTCGTGTCTCTAGCCGTTTGTCCAGCGTTTGGAGCGTCAAACGCCACAGAGGACAAAACAGTGTTTTTAACTCGTTTGTTAACCTCGTGAACATAATTGCTTCTAATATACGCTAGCTAAACCTGAAGGCGTTACATAGTGTTACATAAAGTAAAGCGTAATTGCATTCGCTAACGGCCAGCGTGTAGTGCGCTTTCTGTTCGCCATTCGCTAGC] consensusID : consensus_6262#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 681 fasta sequence [CCGAAAAATCTGTTTCCCCCTTCCTTCCCGTTCGTTTCTTACATGCCCAACGGGTTGGCCAGTTTACTTTTTGCTGTCCCAGTGTGTTGTAGAACGCATGAGATGCGCCTGTCTTTTGTGTGTGTGTGTGTAATGTGCCACACCCCGAAGCGATGATGAGATCCTGGTTTGGATCATTTACATACTTCGTTTCGTTAGTAGTGCATTTGAAGCGTGTTACAGTAGGTGGGTGTAGGATATGCTTCCCATAGTCCATTGTTACGGCTGTATCTTTTTGCTTTTAGGGCATTTAACAACGGCAATGGCACGAAGCAGACAGCTGAATATAGAGCTACCTTCGCTTGTTTGAGTAACTGAACCTAAGCACACACGCGCAGTGGTTCGAGTGGTTCCCTTTTTCCTCCCACCGAGACAAAGCAACAGCACTTTTACACCCAGTCGCGAGATGCATCGAACCATATCATCATTCGATGTGGGGATGCAGCAGAAGTGCGCTTTTGGATGAAAGTTGCAACGAAAAGCTCGAACCACCACCTGTATGCGTGTATGGGTGTGTGTGTTTGAAAACATTCCGCGGCAAGGTGAACGAGTGAATCGGCACAAAATTGTTTGTTCGAACCCGTGATACAGAGAATTCGGTTCGCCGCGTGTGCTAATACTCTCACTCGCTCACTCTTCGTG] [+] EMBL BM586929 [CCGAAAAATCTGTTTCCCCCTTCCTTCCCGTTCGTTTCTTACATGCCCAACGGGTTGGCCAGTTTACTTTTTGCTGTCCCAGTGTGTTGTAGAACGCATGAGATGCGCCTGTCTTTTGTGTGTGTGTGTGTAATGTGCCACACCCCGAAGCGATGATGAGATCCTGGTTTGGATCATTTACATACTTCGTTTCGTTAGTAGTGCATTTGAAGCGTGTTACAGTAGGTGGGTGTAGGATATGCTTCCCATAGTCCATTGTTACGGCTGTATCTTTTTGCTTTTAGGGCATTTAACAACGGCAATGGCACGAAGCAGACAGCTGAATATAGAGCTACCTTCGCTTGTTTGAGTAACTGAACCTAAGCACACACGCGCAGTGGTTCGAGTGGTTCCCTTTTTCCTCCCACCGAGACAAAGCAACAGCACTTTTACACCCAGTCGCGAGATGCATCGAACCATATCATCATTCGATGTGGGGATGCAGCAGAAGTGCGCTTTTGGATGAAAGTTGCAACGAAAAGCTCGAACCACCACCTGTATGCGTGTATGGGTGTGTGTGTTTGAAAACATTCCGCGGCAAGGTGAACGAGTGAATCGGCACAAAATTGTTTGTTCGAACCCGTGATACAGAGAATTCGGTTCGCCGCGTGTGCTAATACTCTCACTCGCTCACTCTTCGTG] consensusID : consensus_6262#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 516 fasta sequence [CGGGCTCACGATCTGCTGAAGTAAGCTGTTTACACACCAACCCAACTCACTCGAAGCGGTGTAACCCGTTGCGATGGAGGGATGTTAGACGTCACAGACAACGCGGGCGGGNCAGGAACTGAGCAGTGTAAACTTGGTTGGTTTTTGTTCTCGTTACTGTTGATGTGCAGTTTTGTTCGCAGCTGGAAAGCGCCAACCGCCAACCCACGGCAGGTGCGCTTGAGAATAACCACGAAATCCACCTATTGAGTTTGAGTTTTACAGCAAAGCGGGTTCGATCAGTGGACATGAAAACATATACACAATACACATATACACACAAACACACACTGGAGCAATTGTATGGTGGGAAGGAAAACACTTTCAACCGGACGTTAGACTGCTTCTCGCATTTAAAAGGGGCGTAATATGGCAAGCGCGGCAAGCGAGAACACAGGCAAGGAATCAAAAATGTGTATGCGTGTGAATCAGCGCCACCGGCTTGCTGGATTAGTGTAAGCGANAANANCCTCGGCG] [-] EMBL AL694283 [CGGGCTCACGATCTGCTGAAGTAAGCTGTTTACACACCAACCCAACTCACTCGAAGCGGTGTAACCCGTTGCGATGGAGGGATGTTAGACGTCACAGACAACGCGGGCGGGNCAGGAACTGAGCAGTGTAAACTTGGTTGGTTTTTGTTCTCGTTACTGTTGATGTGCAGTTTTGTTCGCAGCTGGAAAGCGCCAACCGCCAACCCACGGCAGGTGCGCTTGAGAATAACCACGAAATCCACCTATTGAGTTTGAGTTTTACAGCAAAGCGGGTTCGATCAGTGGACATGAAAACATATACACAATACACATATACACACAAACACACACTGGAGCAATTGTATGGTGGGAAGGAAAACACTTTCAACCGGACGTTAGACTGCTTCTCGCATTTAAAAGGGGCGTAATATGGCAAGCGCGGCAAGCGAGAACACAGGCAAGGAATCAAAAATGTGTATGCGTGTGAATCAGCGCCACCGGCTTGCTGGATTAGTGTAAGCGANAANANCCTCGGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6262#1 ---------------------------------TGGTGGGAAGGAAAACACTTTCAACCG 27 consensus_6262#3 ------------------------------------------------------------ consensus_6262#0 CCGGCAGCAGCACGATCGTTCTCGTTGTTCGCCACTGACGGCGCAACGGTGTAGGTTAAT 60 consensus_6262#2 ------------------------------------------------------------ consensus_6262#1 GACGTTAGACTGCTTCTCGCATTTAAAAGGGGCGTAATATGGCAAGCGCGGCAAGCGAGA 87 consensus_6262#3 -------------------------------------------------------CGGGC 5 consensus_6262#0 CATGCTTGTTTTAGCTCACAGTAGGATAGGATAAAAATCTGTTTCCACCTTCCTTCCCGT 120 consensus_6262#2 -----------------------------CCGAAAAATCTGTTTCCCCCTTCCTTCCCGT 31 * * consensus_6262#1 ACACAGGCAAGGAATCAAAAATGTGTATGCGTGTGAATCA-GCGCCACCGGCTTGCTG-G 145 consensus_6262#3 TCACGATCTGCTGAAGTAAGCTGTTTACACAC-CAACCCA-ACTCACTCGAAGCGGTGTA 63 consensus_6262#0 TCGTTTCTTACATGCCCAACGGGTTGGCCAGTTTACTTTTTGCTGTCCCAGTGTGTTGTA 180 consensus_6262#2 TCGTTTCTTACATGCCCAACGGGTTGGCCAGTTTACTTTTTGCTGTCCCAGTGTGTTGTA 91 * ** ** * * * ** consensus_6262#1 ATTAGT-GTAAGCGAAACGAT-TTAGGCTTAAGCAAGGATAATTGAGGCATCTGGCGTAA 203 consensus_6262#3 ACCCGT-TGCGATGGAGGGATGTTAGACGT---CACAGACAACGCGGGCGG--GNCAGGA 117 consensus_6262#0 GAACGCATGAGATGCGCCTGTCTTTTGTGTGTGTGTGTGTGTAATGTGCCACACCCCGAA 240 consensus_6262#2 GAACGCATGAGATGCGCCTGTCTTTTGTGTGTGTGTGTGT--AATGTGCCACACCCCGAA 149 * * * ** * ** * * consensus_6262#1 ACGGAGCAGCGCG-TGAATTTACACCGCTACAAACATACACACACGT-AC-CCCCTCTTA 260 consensus_6262#3 ACTGAGCAGTG---TAAACTTGGTTGGTTTTTGTTCTCGTTACTGTTGAT-GTGCAGTTT 173 consensus_6262#0 GCGATGATGAGATCCTGGTTTGGATCATTTACATACTTCGTTTCGTTAGTAGTGCATTTT 300 consensus_6262#2 GCGATGATGAGATCCTGGTTTGGATCATTTACATACTTCGTTTCGTTAGTAGTGCATTTG 209 * * * * ** * * * * ** consensus_6262#1 CATT--ACAGCGAAGACACGGCGCAGGACACGAGTATAGCAGAAGTGCGCTTTTGGATGA 318 consensus_6262#3 TGTTC-GCAGCTGGAA---AGCGCCAACCGCCAACCCACGGCAGGTGCGCTTGAGAATAA 229 consensus_6262#0 AAGCGTGTTACAGTAGGTGGGTGTAGGATAT--GCTTCCCATAGTCCATTGTTACGGCTG 358 consensus_6262#2 AAGCGTGTTACAGTAGGTGGGTGTAGGATAT--GCTTCCCATAGTCCATTGTTACGGCTG 267 * * * * * consensus_6262#1 ----AAGTTGCAACGAAAAGCTCGAACCACCACCTGTATGCGTGTATGAGTGTGTGTGTT 374 consensus_6262#3 CCACGAAATCCACCTATTGAGTTTGAGTTTTACAGCAAAGCGGGTTCGATCA-GTGGACA 288 consensus_6262#0 TATCTTTTTGCTTTTAGGGCATTTAACAACGGCAATGGCACGAAGCAGA-CAGCTGAATA 417 consensus_6262#2 TATCTTTTTGCTTTTAGGGCATTTAACAACGGCAATGGCACGAAGCAGA-CAGCTGAATA 326 * * * * * * ** ** ** consensus_6262#1 TGAAAACAT-TCCGCG-GCA-AGGTGAACGAGTGAATCGGCACAAAATTGTTTGTTCGAA 431 consensus_6262#3 TGAAAACATATACACA-ATACACATATACACACAAACACACACTGGAGCAATTGTATG-- 345 consensus_6262#0 TAGAGCTACCTTCGCTTGTTTGAGTAACTGAACCTAAGCACACACGCGCAATGGTTCGA- 476 consensus_6262#2 TAGAGCTACCTTCGCTTGTTTGAGTAACTGAACCTAAGCACACACGCGCAGTGGTTCGA- 385 * * * * * * * * *** * ** * consensus_6262#1 CCCGTGATACAGAGAATTCGGTTCGCCTCACTCACTCACTCACTCTTCGTGTCTCTAGCC 491 consensus_6262#3 ---GTGGGAAGGAAAACACTTTCAACCGGAC--GTTAGACTGCTTCTCGCATTTAAAAGG 400 consensus_6262#0 ---GTGGTTCCCTTTTTCCTCCCACCGAGACAAAGCAACAGCACTTTTACACCCAGTCGC 533 consensus_6262#2 ---GTGGTTCCCTTTTTCCTCCCACCGAGACAAAGCAACAGCACTTTTACACCCAGTCGC 442 *** * * ** * consensus_6262#1 GTTTGTCCAGCGTTTGGAGCGTCAAACGC---CACAGAGGACAAAACAGTGTTTTTAACT 548 consensus_6262#3 GGC-GTAATATGGCAAGCGCGGCAAGCGAGAACACAGGCAAGGAATCAAAAATGTGTATG 459 consensus_6262#0 GAGATGCATCGAACCATATCATCATTCGA---TGTGGG-GATGCAGCAGAAGTGCGCTTT 589 consensus_6262#2 GAGATGCATCGAACCATATCATCATTCGA---TGTGGG-GATGCAGCAGAAGTGCGCTTT 498 * * ** ** * * * ** * consensus_6262#1 CGTTTG----TTAACCTCGTGAACATAATTGCTTCTAATATACGCT-AGCTAAACCTGAA 603 consensus_6262#3 CGTGTGAA--TCAGCGCCACCGGCTTGCTGGATT--AGTGTAAGCG-ANAANANCCTCGG 514 consensus_6262#0 TGGATGAAAGTTGCAACGAAAAGCTCGAACCACCA-CCTGTATGCGTGTATGAGTGTGTG 648 consensus_6262#2 TGGATGAAAGTTGCAACGAAAAGCTCGAACCACCA-CCTGTATGCGTGTATGGGTGTGTG 557 * ** * * * ** ** * consensus_6262#1 GGCGTTACATAGTGTTACATAAAGTAAAGCGTAATTGCATTCGCTAACGGCCAGCGTGTA 663 consensus_6262#3 CG---------------------------------------------------------- 516 consensus_6262#0 TGTGTTTGAAAACATTCCGCGGCAGGGTGAACGAGTG--------------------TTC 688 consensus_6262#2 TGT--TTGAAAACATTCCGCGGCAAGGTGAACGAGTGAATCGGCACAAAATTGTTTGTTC 615 * consensus_6262#1 GTGCGCTTTCTGTTCGCCATTCGCTAGC-------------------------------- 691 consensus_6262#3 ------------------------------------------------------------ consensus_6262#0 GG--------TTCAGAGAATTCGGTTCGCCGCGTGTGCTAATACTCTCACTCACTCACTC 740 consensus_6262#2 GAACCCGTGATACAGAGAATTCGGTTCGCCGCGTGTGCTAATACTCTCACTCGCTCACTC 675 consensus_6262#1 ------------------------------------------------------------ consensus_6262#3 ------------------------------------------------------------ consensus_6262#0 TTCGTGTCTCTAGCGGTTTGTCCAGCGTTTGGAGCGTCAAACGCCACAGAGGACAAAACA 800 consensus_6262#2 TTCGTG------------------------------------------------------ 681 consensus_6262#1 ------------------------------ consensus_6262#3 ------------------------------ consensus_6262#0 GTGTTTTTAACTCGTTTGGTAACCTCGTGA 830 consensus_6262#2 ------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||