These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6271#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1122 fasta sequence [CAGATTGCCCCAGGTTTAAGGCAGCTCCGTGGTACAGCTTGATCCAGACGCACACGGTACAGAGGTTCGTTACTATGTGCTTCCATATCCTGGCATACTACGATAAAGTAAACCGAGAGCGGGTCAGAAACACCAAAAGCCTGTGGTTAGTGTTTTTAATCGTTCGAAAATGTCACTTCTTCTCGAAGCAACCCTGCCGAAGAACCAGTTTAGTTTAGGGTTGCTTCCCGTCCAAGATCGTCGCCAGTTATCCATCCATATCCGTGCTGGTTTTGCAACATGATTCATACGAACGTGCCCTGCGTACGATGTTCGTGTCCATGACTGAGCATCATAACTTACCTCGCCGGAAGCATACGCAACTGAGGTAACTGCGTANACTATCTAAGGTCGCACCGGAATTGCATACANTAGCCTTAACATCCGAANCGAAACTCAAAGGGACGGGCGAGTNTACTCTAAANTTTCTCNATTTCATGGGTCTGTGCCAAGCCTTGTATTCTTCAATGGTACGAATTTCGGGCCAGAGCTGTGCCTAGGAGTTGTGCTAGTGGCCCCACAAATGGGTGGCAAGNAGGAAGNANACACAAGGNAAAACAAACCAAACGGCAAAAATTTCCAAACACACCGGTTATGGGTTACGGNGATTTGGGGTTACATNGGTAGGTAGGNGTTGGCCGGCCTTATACGGTTTACCGGCAACCTTTAAAAAATTCCCAAAGCCTGGTTATAGCGCGATGGGAACGTTCGACACACAATTCCGNCAACCAGCAAAGCAGCTGGTTGGAACCCGGGGACAACCAATTGGAACAGAATANCCTAGTTGACNTCACACCAAGTCCAAANTCCCCGATAAATATTCCCAGGTTAGGTCACATAAACACAACACAGANGGGAAAAAAACNATCCATGGGTATGATNCACTCAAAAACAAAGTGGTTACACTAGACAANTTTACCGACCCAAACGAGAGCGTTTNGGGNGTGGAACAAGCAGCGGTTTCTGGGGTTAAACAAAGGTTTCCCCCACTTTAGGGATGACACGACCCCCCAGGAGATTAGGATNTAAANNTNATAGNCACAGAGNTAAAATAAAGGAGCTTGTTAGNGAATTTTGCGNACN] [+] EMBL AL697329 [CAGATTGCCCCAGGTTTAAGGCAGCTCCGTGGTACAGCTTGATCCAGACGCACACGGTACAGAGGTTCGTTACTATGTGCTTCCATATCCTGGCATACTACGATAAAGTAAACCGAGAGCGGGTCAGAAACACCAAAAGCCTGTGGTTAGTGTTTTTAATCGTTCGAAAATGTCACTTCTTCTCGAAGCAACCCTGCCGAAGAACCAGTTTAGTTTAGGGTTGCTTCCCGTCCAAGATCGTCGCCAGTTATCCATCCATATCCGTGCTGGTTTTGCAACATGATTCATACGAACGTGCCCTGCGTACGATGTTCGTGTCCATGACTGAGCATCATAACTTACCTCGCCGGAAGCATACGCAACTGAGGTAACTGCGTANACTATCTAAGGTCGCACCGGAATTGCATACANTAGCCTTAACATCCGAANCGAAACTCAAAGGGACGGGCGAGTNTACTCTAAANTTTCTCNATTTCATGGGTCTGTGCCAAGCCTTGTATTCTTCAATGGTACGAATTTCGGGCCAGAGCTGTGCCTAGGAGTTGTGCTAGTGGCCCCACAAATGGGTGGCAAGNAGGAAGNANACACAAGGNAAAACAAACCAAACGGCAAAAATTTCCAAACACACCGGTTATGGGTTACGGNGATTTGGGGTTACATNGGTAGGTAGGNGTTGGCCGGCCTTATACGGTTTACCGGCAACCTTTAAAAAATTCCCAAAGCCTGGTTATAGCGCGATGGGAACGTTCGACACACAATTCCGNCAACCAGCAAAGCAGCTGGTTGGAACCCGGGGACAACCAATTGGAACAGAATANCCTAGTTGACNTCACACCAAGTCCAAANTCCCCGATAAATATTCCCAGGTTAGGTCACATAAACACAACACAGANGGGAAAAAAACNATCCATGGGTATGATNCACTCAAAAACAAAGTGGTTACACTAGACAANTTTACCGACCCAAACGAGAGCGTTTNGGGNGTGGAACAAGCAGCGGTTTCTGGGGTTAAACAAAGGTTTCCCCCACTTTAGGGATGACACGACCCCCCAGGAGATTAGGATNTAAANNTNATAGNCACAGAGNTAAAATAAAGGAGCTTGTTAGNGAATTTTGCGNACN] consensusID : consensus_6271#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 802 fasta sequence [CGATAAAGTAAACCGAGAGCGGGTCAGAAACACCGAAAGCCGTGCGTGGTTAGTGTTTTTTTGAAAATGTCACTTCTTCTCCAAGCAACCCGTCGAAGAACCAGTTTAGTTTAGGGTTGCCTCCCGTCCAAGTTCGTCGCCAGTTATCCATCCATATCCGTGTGGTTTGCAACATGATTCATACGAACGTGCCCGCGTACGATGTTGTGTTATGATGAGATCTAACTTACTCGCCGAAGCATACGCAATGAGCTGTGTTTATGGTCGATTCGGCAGGCTGTGCTGGGTGTGTAGTGCCACAAGGGAGAGAGAAAAGAAAACAAGAAATCCAAACGTTGGTCGGTGGTTGTGTGGTGCGCTTCGTTCGCACTAAATCAACGTTGGTGGAGTGAAAATCGCACAGAACGTGACCGGAACCATGACGATTCTGTGCTCCCATCATCGTATCGTGGAAAAGGAACCGTCCAAAGTAAATCCACGCTGGAAGTCTAAGTGTAAGCTGGTGCAACTGTTTCTAAATCTTTTTCGCATGCACTGTACTTCAAACCACTTGTGGCACTTATCTTATCGTTTCGTCCTTTCAGCCTGTACCGTGTTTTCGTTGCTGATGATTGTGTCATCATGCCTGGTGGTTAGTTTCAGTTTGCACGGTCTAATTGCAGACTACAAACACCATTGTTTGCTAAAAGCAAACCTACATTTTGTGCCGATAGCAGTCGAGAACGGCTCCGATACCGGAACGAACCAAACGGATGTTCAATATGGAATCGATGAATATTGGAGCAATTGGAACAGNGGGCTG] [+] EMBL CNS09EMR [CGATAAAGTAAACCGAGAGCGGGTCAGAAACACCGAAAGCCGTGCGTGGTTAGTGTTTTTTTGAAAATGTCACTTCTTCTCCAAGCAACCCGTCGAAGAACCAGTTTAGTTTAGGGTTGCCTCCCGTCCAAGTTCGTCGCCAGTTATCCATCCATATCCGTGTGGTTTGCAACATGATTCATACGAACGTGCCCGCGTACGATGTTGTGTTATGATGAGATCTAACTTACTCGCCGAAGCATACGCAATGAGCTGTGTTTATGGTCGATTCGGCAGGCTGTGCTGGGTGTGTAGTGCCACAAGGGAGAGAGAAAAGAAAACAAGAAATCCAAACGTTGGTCGGTGGTTGTGTGGTGCGCTTCGTTCGCACTAAATCAACGTTGGTGGAGTGAAAATCGCACAGAACGTGACCGGAACCATGACGATTCTGTGCTCCCATCATCGTATCGTGGAAAAGGAACCGTCCAAAGTAAATCCACGCTGGAAGTC ] [-] EMBL BX610036 [ CCATCATCGTATCGTGGAAAAGGAACCGTCCAAAGTAAATCCACGCTGGAAGTGTAAGTGTAAGCTGGTGCAACTGTTTCTAAATCTTTTTCGCATGCACTGTACTTCAAACCACTTGTGGCACTTATCTTATCGTTTCGTCCTTTCAGCCTGTACCGTGTTTTCGTTGCTGATGATTGTGTCATCATGCCTGGTGGTTAGTTTCAGTTTGCACGGTCTAATTGCAGACTACAAACACCATTGTTTGCTAAAAGCAAACCTACATTTTGTGCCGATAGCAGTCGAGAACGGCTCCGA ] [+] EMBL BX625859 [ CCATTGTTTGCTAAAAGCAAACCTACATTTTGTGCCGATAGCAGTCGAGAATGGCTCCGATACCGGAACGAACCAAACGGATGTTCAATATGGAATCGATGAATATTGGAGCAATTGGAACAGNGGGCTG] consensusID : consensus_6271#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 587 fasta sequence [GATCCCCCGAGTTTAGATCCAGACGCACACGGTACAGAGGTTCGTTACTATGGCTTCCATATCCGGCATACTACGATAAAGTAAACCGAGAGCGGGTCAGAAACACCAAAAGCCGTGGTTAGTGTTTTTTTCGTTCGAAAATGTCACTTCTTCTCGAAGCAACCCGCCGAAGAACCAGTTTAGTTTAGGGTTGCTTCCCGTCCAAGATCGTCGCCAGTTATCCATCCATATCCGTGTGGTTTGCAACATGATTCATACGAACGTGCCCGCGTACGATGTTGTGTTATGATGAGATCATAACTTACTCGCCGAAGCATACGCAATGAGGTAATGCGTTATTTCTAAGTCGCACCGGAATGCATACATAGGCTTAAATCCGAACGAACTCAAGGACGGGCGAGTTTTAATTTATTCATGGTTGTGCAGCTGTATTTATGGTCGATTCGGCAGGCTGTGCTGGGTGTGTAGTGCCACAAGGGAGAGAGAAAAGAAAACAAGAAATCCAAACGTTGGTCGGTGGTTGTGTGGTGCGCTTCGTTCGCACTAAATCAACGTTGGTGGAGTGAAAATCGCACAGAACGTGACCG] [+] EMBL AL692748 [GATCCCCCGAGTTTAGATCCAGACGCACACGGTACAGAGGTTCGTTACTATGGCTTCCATATCCGGCATACTACGATAAAGTAAACCGAGAGCGGGTCAGAAACACCAAAAGCCGTGGTTAGTGTTTTTTTCGTTCGAAAATGTCACTTCTTCTCGAAGCAACCCGCCGAAGAACCAGTTTAGTTTAGGGTTGCTTCCCGTCCAAGATCGTCGCCAGTTATCCATCCATATCCGTGTGGTTTGCAACATGATTCATACGAACGTGCCCGCGTACGATGTTGTGTTATGATGAGATCATAACTTACTCGCCGAAGCATACGCAATGAGGTAATGCGTTATTTCTAAGTCGCACCGGAATGCATACATAGGCTTAAATCCGAACGAACTCAAGGACGGGCGAGTTTTAATTTATTCATGGTTGTGCAGCTGTATTTATGGTCGATTCGGCAGGCTGTGCTGGGTGTGTAGTGCCACAAGGGAGAGAGAAAAGAAAACAAGAAATCCAAACGTTGGTCGGTGGTTGTGTGGTGCGCTTCGTTCGCACTAAATCAACGTTGGTGGAGTGAAAATCGCACAGAACGTGACCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6271#0 CAGATTGCCCCAGGTTTAAGGCAGCTCCGTGGTACAGCTTGATCCAGACGCACACGGTAC 60 consensus_6271#2 -----------------------GATCCCCCGAGT--TTAGATCCAGACGCACACGGTAC 35 consensus_6271#1 ------------------------------------------------------------ consensus_6271#0 AGAGGTTCGTTACTATGTGCTTCCATATCCTGGCATACTACGATAAAGTAAACCGAGAGC 120 consensus_6271#2 AGAGGTTCGTTACTATG-GCTTCCATATCC-GGCATACTACGATAAAGTAAACCGAGAGC 93 consensus_6271#1 ----------------------------------------CGATAAAGTAAACCGAGAGC 20 ******************** consensus_6271#0 GGGTCAGAAACACCAAAAGCCT---GTGGTTAGTGTTTTTAATCGTTCGAAAATGTCACT 177 consensus_6271#2 GGGTCAGAAACACCAAAAGCC----GTGGTTAGTGTTTTTT-TCGTTCGAAAATGTCACT 148 consensus_6271#1 GGGTCAGAAACACCGAAAGCCGTGCGTGGTTAGTGTTTTT------TTGAAAATGTCACT 74 ************** ****** *************** * ************ consensus_6271#0 TCTTCTCGAAGCAACCCTGCCGAAGAACCAGTTTAGTTTAGGGTTGCTTCCCGTCCAAGA 237 consensus_6271#2 TCTTCTCGAAGCAACCC-GCCGAAGAACCAGTTTAGTTTAGGGTTGCTTCCCGTCCAAGA 207 consensus_6271#1 TCTTCTCCAAGCAACCC-GTCGAAGAACCAGTTTAGTTTAGGGTTGCCTCCCGTCCAAGT 133 ******* ********* * *************************** *********** consensus_6271#0 TCGTCGCCAGTTATCCATCCATATCCGTGCTGGTTTTGCAACATGATTCATACGAACGTG 297 consensus_6271#2 TCGTCGCCAGTTATCCATCCATATCCGTGTGG--TTTGCAACATGATTCATACGAACGTG 265 consensus_6271#1 TCGTCGCCAGTTATCCATCCATATCCGTGTGG--TTTGCAACATGATTCATACGAACGTG 191 ***************************** * ************************** consensus_6271#0 CCCTGCGTACGATGTTCGTGTCCATGACTGAGCATCATAACTTACCTCGCCGGAAGCATA 357 consensus_6271#2 CCC-GCGTACGATGTT-GTGTT-ATGA-TGAG-ATCATAACTTAC-TCGCCG-AAGCATA 318 consensus_6271#1 CCC-GCGTACGATGTT-GTGTT-ATGA-TGAG-ATC-TAACTTAC-TCGCCG-AAGCATA 243 *** ************ **** **** **** *** ******** ****** ******* consensus_6271#0 CGCAACTGAGGTAACTGCGTANACTATCTAAGGTCGCACCGGAATTGCATACANTAGCCT 417 consensus_6271#2 CGCAA-TGAGGTAA-TGCGTTA--TTTCTAAG-TCGCACCGGAAT-GCATACAT-AGGCT 371 consensus_6271#1 CGCAA-TGAGCTG-----------TGTTTATGGTCGATTCGGCAGGCTGTGCTGGGTGTG 291 ***** **** * * * ** * *** *** * * * consensus_6271#0 TAACATCCGAANCGAAACTCAAAGGGACGGGCGAGTNTACTCTAAANTTTCTCNATTTCA 477 consensus_6271#2 TAA-ATCCGAAC--GAACTCAA--GGACGGGCGAGTTTT------AATTTATTCAT---- 416 consensus_6271#1 TAGTGCCACAAGGGAGAGAGAAAAGAAAACAAGAAATCC---AAACGTTGGTCGGT---- 344 ** * ** * ** * * ** ** * * consensus_6271#0 TGGGTCTGTGCCAAGCCTTGTATTCTTCAATGGTACGAATTTCGGGCCAGAGCTGTGCCT 537 consensus_6271#2 ---GGTTGTGC--AGC--TGTATTT----ATGGT-CGA--TTCGG--CAG-GCTGTGCTG 459 consensus_6271#1 -GGTTGTGTGGTGCGCTTCGTTCGCACTAAATCAACGTTGGTGGAGTGAAAATCGCACAG 403 **** ** ** * ** * * * * * consensus_6271#0 AGGAGTTGTGCTAGTGGCCCC-ACAAATGGGTGGCAAGNAGGAAGNANACACAAGGNAAA 596 consensus_6271#2 GG----TGTG-TAGTG-CCAC-AAGGGAGAGAGAAAAGAAAACAAGAAATCCAAACGTTG 512 consensus_6271#1 AA----CGTGACCGGAACCATGACGATTCTGTGCTCCCATCATCGTATCGTGGAAAAGGA 459 *** * ** * * * * * consensus_6271#0 ACAAACCAAACGGCAAAAATTTCCAAACACACCGGTTATGGGTTACGGNGATTTGGGGTT 656 consensus_6271#2 GTCGGTGGTTGTGTGGTGCGCTTCGTTCGCACTAAATCAACGTTG-GTGGAGTGAAAATC 571 consensus_6271#1 ACCGTCCAAA--GTAAATCCACGCTGGAAGTCTAAGTGTAAGCTGGTGCAACTGTTTCTA 517 * * * * * * * * * consensus_6271#0 ACATNGGTAGGTAGGNGTTGGCCGGCCTTATACGGTTTACCGGCAACCTTTAAAAAATTC 716 consensus_6271#2 GCACAGA-ACGTGACCG------------------------------------------- 587 consensus_6271#1 AATCTTTTTCGCATGCACTGT---ACTTCAAACCACTTGTGGCACTTATCTTATCGTTTC 574 * consensus_6271#0 CCAAAGCCTGGTTATAGCGCGATGGGAACGTTCGACACACAATTCCGNCAACCAGCAAAG 776 consensus_6271#2 ------------------------------------------------------------ consensus_6271#1 GTCCTTTCAGCCTGTACCGTGTTTT---CGTT--GCTGATGATTGTGTCATCATGCCTGG 629 consensus_6271#0 CAGCTGGTTGGAACCCGGGGACAACCAATTG--GAACA-GAATANCCTAGTTGACNTCAC 833 consensus_6271#2 ------------------------------------------------------------ consensus_6271#1 TGGTTAGTTTCAGTTTGCACG-GTCTAATTGCAGACTACAAACACCATTGTTTGCTAAA- 687 consensus_6271#0 ACCAAGTCCAAANTCCCCGATAAATATTCCCAGGTTAGGTCACATAAACACAACACAGAN 893 consensus_6271#2 ------------------------------------------------------------ consensus_6271#1 AGCAAACCTACATTTTGTGCCGA----TAGCAGTCGAGA----ACGGCTCCGATACCGGA 739 consensus_6271#0 GGGAAAAAAACNATCCATGGGTATG-ATNCACTCAAAAACAAAGTGGTTACACTAGACAA 952 consensus_6271#2 ------------------------------------------------------------ consensus_6271#1 ACGAACCAAACGGATGTTCAATATGGAATCGATGAATATTGGAGCAATTGGAACAGNGGG 799 consensus_6271#0 NTTTACCGACCCAAACGAGAGCGTTTNGGGNGTGGAACAAGCAGCGGTTTCTGGGGTTAA 1012 consensus_6271#2 ------------------------------------------------------------ consensus_6271#1 CTG--------------------------------------------------------- 802 consensus_6271#0 ACAAAGGTTTCCCCCACTTTAGGGATGACACGACCCCCCAGGAGATTAGGATNTAAANNT 1072 consensus_6271#2 ------------------------------------------------------------ consensus_6271#1 ------------------------------------------------------------ consensus_6271#0 NATAGNCACAGAGNTAAAATAAAGGAGCTTGTTAGNGAATTTTGCGNACN 1122 consensus_6271#2 -------------------------------------------------- consensus_6271#1 -------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||